mRNA_Ecto-sp13_S_contig70709.18150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70709.18150.1
Unique NamemRNA_Ecto-sp13_S_contig70709.18150.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70709.18150.1 vs. uniprot
Match: D7FZX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX0_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 5.290e-18
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    4 ADLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRV 138
            +DLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRV
Sbjct:  109 SDLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRV 153
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BLAST of mRNA_Ecto-sp13_S_contig70709.18150.1 vs. uniprot
Match: A0A6H5KWP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.580e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    7 DLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRV 138
            DLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRV
Sbjct:  124 DLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRV 167
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BLAST of mRNA_Ecto-sp13_S_contig70709.18150.1 vs. uniprot
Match: A0A397BBX3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BBX3_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 4.770e-5
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GADLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKR 135
            G D+AQRH+++L++RD   +K D+R  EK DF K+ +EI ++EKR
Sbjct:    5 GVDIAQRHMRDLLERDFNNLKQDIRMIEKNDFDKVRNEIVDMEKR 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70709.18150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FZX0_ECTSI5.290e-1897.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWP7_9PHAE9.580e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397BBX3_9STRA4.770e-548.89Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70709contigEcto-sp13_S_contig70709:484..693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.0
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog2880.D7FZX0
Model size210
KEGG koko:K22137
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Protein of unknown function (DUF1640)
EggNOG OGs29YXM@1,2RXUY@2759
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.3117428-CDS-Ecto-sp13_S_contig70709:483..6931681463970.3117428-CDS-Ecto-sp13_S_contig70709:483..693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70709 484..693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70709.18150.1prot_Ecto-sp13_S_contig70709.18150.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70709 484..693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70709.18150.1

>prot_Ecto-sp13_S_contig70709.18150.1 ID=prot_Ecto-sp13_S_contig70709.18150.1|Name=mRNA_Ecto-sp13_S_contig70709.18150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
GADLAQRHLKELMQRDLMQVKADVRSEEKFDFAKLHDEITELEKRVSFND
TTRTVGERPLSTESNSSLLL
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mRNA from alignment at Ecto-sp13_S_contig70709:484..693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70709.18150.1 ID=mRNA_Ecto-sp13_S_contig70709.18150.1|Name=mRNA_Ecto-sp13_S_contig70709.18150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70709:484..693+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCAGACCTCGCCCAGCGGCACCTGAAGGAGCTGATGCAGAGGGACCT
GATGCAGGTCAAGGCCGACGTTCGCTCGGAGGAGAAGTTCGATTTCGCCA
AGCTTCACGACGAGATTACCGAGCTGGAGAAGCGGGTGAGTTTCAACGAC
ACCACCCGCACTGTCGGCGAAAGGCCGCTCTCCACCGAGAGCAATTCATC
CTTGTTGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70709:484..693+

>mRNA_Ecto-sp13_S_contig70709.18150.1 ID=mRNA_Ecto-sp13_S_contig70709.18150.1|Name=mRNA_Ecto-sp13_S_contig70709.18150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70709:484..693+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCAGACCTCGCCCAGCGGCACCTGAAGGAGCTGATGCAGAGGGACCT
GATGCAGGTCAAGGCCGACGTTCGCTCGGAGGAGAAGTTCGATTTCGCCA
AGCTTCACGACGAGATTACCGAGCTGGAGAAGCGGGTGAGTTTCAACGAC
ACCACCCGCACTGTCGGCGAAAGGCCGCTCTCCACCGAGAGCAATTCATC
CTTGTTGTTG
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