mRNA_Ecto-sp13_S_contig707.18147.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: D8LPP6_ECTSI (AP complex subunit sigma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP6_ECTSI) HSP 1 Score: 316 bits (809), Expect = 4.200e-109 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 471
MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKSS 157
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: A0A835Z9B6_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9B6_9STRA) HSP 1 Score: 271 bits (692), Expect = 2.810e-91 Identity = 135/156 (86.54%), Postives = 144/156 (92.31%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSKS 468
MIKFVLMVNKMGQTRVSSYY+W+PIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGV SD+ENELG+LEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMV+NG +CE NR+N+LKPL LMD S D+ FGSKS
Sbjct: 1 MIKFVLMVNKMGQTRVSSYYEWLPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVD-SSDEENELGMLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVMNGCVCEANRDNILKPLQLMDKVSANDDAGFGSKS 155
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: A0A7S2UUI5_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUI5_9STRA) HSP 1 Score: 238 bits (608), Expect = 1.560e-78 Identity = 112/152 (73.68%), Postives = 135/152 (88.82%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVF 456
MIKF+LMVNK GQTR+SSY++WM IPERVALE+E++R+C SR+E QCSF E+RGY++IYRRYASLFFIVGVG +D+ENELGVLEFIH LVETLDKYF+SVCELDIMFN+EK HFILDEMV+NGYI E NR N+LKP+ MD +++ DS+F
Sbjct: 1 MIKFILMVNKQGQTRLSSYFEWMTIPERVALESEIIRKCLSRAEYQCSFLEYRGYRVIYRRYASLFFIVGVG--ADEENELGVLEFIHSLVETLDKYFESVCELDIMFNMEKAHFILDEMVMNGYIMETNRTNILKPIAQMDKMANSEDSIF 150
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: F0Y567_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y567_AURAN) HSP 1 Score: 226 bits (575), Expect = 1.660e-73 Identity = 105/144 (72.92%), Postives = 127/144 (88.19%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 435
I+F+LMVNK GQTR+S+YY+W+P+PERVALE+E++R+C SRSE QCSF E+RGYK++YRRYASLFFIVG + D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ NVLKP+ LM+ +S
Sbjct: 3 IRFILMVNKQGQTRLSTYYEWLPMPERVALESEIIRKCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGC--EQDSENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVMNGCIVETNKANVLKPIALMEKAS 144
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: A0A7S2FA09_9STRA (AP complex subunit sigma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA09_9STRA) HSP 1 Score: 224 bits (572), Expect = 9.210e-73 Identity = 111/155 (71.61%), Postives = 132/155 (85.16%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVFGSK 465
M+KFVLMVNK GQTR+SSYY+W+P+ ER ALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVG+ D+ NELGVLEFIH LVETLDKYF+SVCELDIMFNLEK HFIL+EMV NG I E N+ N+LKP++LM+ +S DSVF SK
Sbjct: 20 MLKFVLMVNKQGQTRLSSYYEWIPMQERCALEAEIIRKCLSRNETQCSFVEYRGYKVIYRRYASLFFIVGM---KDNMNELGVLEFIHALVETLDKYFESVCELDIMFNLEKAHFILEEMVQNGCIFETNKANILKPIMLMEKASD--DSVFSSK 169
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: A0A7S3ZZG7_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZG7_9STRA) HSP 1 Score: 224 bits (570), Expect = 9.250e-73 Identity = 106/144 (73.61%), Postives = 126/144 (87.50%), Query Frame = 1
Query: 4 IKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 435
IKFVLMVNK GQTR+S+YY+W+ +PERVALEAE++R C SRSE QCSF E+RGYK++YRRYASLFFIVGV D D ENELG+LEFIH LVETLDKYF+SVCELDIMFNLEK HFILDEMV++G + E N+ N+LKP+ LM+ +S
Sbjct: 3 IKFVLMVNKQGQTRLSTYYEWLSMPERVALEAEIIRTCLSRSEFQCSFVEYRGYKVVYRRYASLFFIVGV--DQDGENELGILEFIHALVETLDKYFESVCELDIMFNLEKAHFILDEMVVDGCVVETNKVNILKPIALMEKAS 144
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: A0A2R5GZ26_9STRA (AP complex subunit sigma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ26_9STRA) HSP 1 Score: 222 bits (566), Expect = 2.980e-72 Identity = 106/145 (73.10%), Postives = 126/145 (86.90%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 435
MIKFVLMVNK GQTR+SSYY+W+ I ER ALEAE++R+C +R+E QCSF E RGYK++YRRYASLFFIVGV D D+ENELG+LEFIHCLVETLDKYF +VCELDIMFNLEK HFIL+EMV NG++ E N+ NVLKP+ ++DS S
Sbjct: 1 MIKFVLMVNKQGQTRLSSYYEWLTIEERGALEAEIIRKCLARTENQCSFMENRGYKVVYRRYASLFFIVGV--DQDEENELGILEFIHCLVETLDKYFSNVCELDIMFNLEKAHFILNEMVQNGHVVEANKANVLKPITMLDSIS 143
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: W7U353_9STRA (AP complex subunit sigma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U353_9STRA) HSP 1 Score: 221 bits (562), Expect = 2.680e-71 Identity = 108/166 (65.06%), Postives = 132/166 (79.52%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDD--------------ENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVF 456
MI+F+L VNK GQTR+SSYY WM IPERVALEAE++R+C SRSELQC F E+RG+K+IYRRYASLFFIVGV + DD ENEL +LEFIH LVETLDKYF+SVCELDIMFNLEK HFI+DEMV+NG+I + N+ N+LKP+ LM+ +S + +S+F
Sbjct: 1 MIRFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFIEYRGHKVIYRRYASLFFIVGV--EGDDATGSAHSVSTNGGCENELAILEFIHALVETLDKYFESVCELDIMFNLEKAHFIVDEMVINGHIVDANKTNILKPIHLMEKASASEESIF 164
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: F0W0A7_9STRA (AP complex subunit sigma n=21 Tax=Oomycota TaxID=4762 RepID=F0W0A7_9STRA) HSP 1 Score: 219 bits (557), Expect = 7.010e-71 Identity = 107/145 (73.79%), Postives = 126/145 (86.90%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSS 435
MIKFVLMVNK GQTR++ YYD++ I ERVALEAE++R+C SR+E QCSF E+RGYK+IYRRYASLFFIVGV D D ENELG+LEFIH LVET+DKYF+SVCELDIMFNLEK HFILDEMV+NG I E N+ ++LKP+ LM+ SS
Sbjct: 1 MIKFVLMVNKQGQTRLAQYYDFLSIQERVALEAEIIRKCLSRNENQCSFVEYRGYKVIYRRYASLFFIVGVQND-DSENELGILEFIHALVETMDKYFESVCELDIMFNLEKAHFILDEMVMNGSIVESNKVSILKPIHLMEKSS 144
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Match: A0A7S3GXI4_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXI4_9STRA) HSP 1 Score: 218 bits (556), Expect = 1.300e-70 Identity = 102/152 (67.11%), Postives = 127/152 (83.55%), Query Frame = 1
Query: 1 MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFEFRGYKIIYRRYASLFFIVGVGVDSDDENELGVLEFIHCLVETLDKYFQSVCELDIMFNLEKTHFILDEMVLNGYICEGNRENVLKPLLLMDSSSHAGDSVF 456
MIKFVLMVNK GQTR++SY+ W PI ERVALEAE++RRC SR+E QCSF E+RG+K++YRRYASLFF+V V D ++ENEL +LEFIH LVET+DKYF+SVCELDIMF++EK H+I+DEMV+NG I E N+ N+LKPL LMD + A +F
Sbjct: 1 MIKFVLMVNKQGQTRLASYFQWYPIQERVALEAEIIRRCLSRTEFQCSFIEYRGFKVVYRRYASLFFVVAV--DGEEENELAILEFIHSLVETMDKYFESVCELDIMFHIEKAHYIVDEMVVNGSIVENNKVNILKPLALMDKLASAEGGIF 150 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig707.18147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig707.18147.1 >prot_Ecto-sp13_S_contig707.18147.1 ID=prot_Ecto-sp13_S_contig707.18147.1|Name=mRNA_Ecto-sp13_S_contig707.18147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp MIKFVLMVNKMGQTRVSSYYDWMPIPERVALEAEVVRRCFSRSELQCSFFback to top mRNA from alignment at Ecto-sp13_S_contig707:4029..6196- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig707.18147.1 ID=mRNA_Ecto-sp13_S_contig707.18147.1|Name=mRNA_Ecto-sp13_S_contig707.18147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig707:4029..6196- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig707:4029..6196- >mRNA_Ecto-sp13_S_contig707.18147.1 ID=mRNA_Ecto-sp13_S_contig707.18147.1|Name=mRNA_Ecto-sp13_S_contig707.18147.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig707:4029..6196- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |