mRNA_Ecto-sp13_S_contig707.18146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig707.18146.1
Unique NamemRNA_Ecto-sp13_S_contig707.18146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: D8LPP7_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP7_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 8.850e-127
Identity = 193/200 (96.50%), Postives = 196/200 (98.00%), Query Frame = 2 
Query:  986 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGSRVFGDDGQWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAVRCG 1585
            AGAPVSKSLAI+TAVSTLVVLQNNSQDTAALIG RVFGDDGQWWRLLTSMFPLGSVWELILCL+IIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFP FRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVA LYWS+ SPLQSFRIPGRQLFAVRCG
Sbjct:    7 AGAPVSKSLAIITAVSTLVVLQNNSQDTAALIGVRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPVFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVAFLYWSNRSPLQSFRIPGRQLFAVRCG 206
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: A0A6H5L6R3_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R3_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 3.030e-126
Identity = 195/200 (97.50%), Postives = 198/200 (99.00%), Query Frame = 2 
Query:  986 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGSRVFGDDGQWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAVRCG 1585
            AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIG RVFGDDGQWWRLLTSMFPLGSVWELILCL+IIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLT+GNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFA+ CG
Sbjct:    7 AGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGIRVFGDDGQWWRLLTSMFPLGSVWELILCLNIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTVGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPGRQLFAI-CG 205
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: A0A2D4C2S4_PYTIN (UBA domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2S4_PYTIN)

HSP 1 Score: 74.7 bits (182), Expect = 5.450e-11
Identity = 55/192 (28.65%), Postives = 92/192 (47.92%), Query Frame = 2 
Query:  989 GAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGSRVFGDDGQWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFF--RPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            GAPV+ + ++    ++   L  + +   +L+G       GQ+WRL +S             L II  FR+LER +GS KFGS +F    +S  ++LA  +  P    R P GP  +L A+ V +  ++P   P   +I  +  + K   Y  +  +  HD     +S   G+++ +L+ S  +PL   R+PG
Sbjct:   10 GAPVTYAASLAIGAASSATLLFDMEGPFSLLGRDAVVRRGQYWRLWSSQLAFHHGLAASFGLYIIFQFRVLERQMGSRKFGSLVFFIWTISALLKLAALLSMPSLARRXPPGPYALLGALTVFFMKFVPRLHPKAYSIVGINFSDKSSTYVLMAAILLHDP-RKLLSYIPGMLLGVLFSS--TPLSKLRLPG 198
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: G4ZVF7_PHYSP (UBA domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVF7_PHYSP)

HSP 1 Score: 72.0 bits (175), Expect = 4.580e-10
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 2 
Query: 1109 QWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRP--PLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            Q+WRLL+S         + L L ++  FR+LER +GS KFGS L    L+S +++LA     P+     P G  P++ A  V +  +IP  +P  L++G +  + K   Y  +LV+   D Y++ +    G    LL+ S  +PL   R+P 
Sbjct:   49 QYWRLLSSQLTFHHGLAVSLGLYVVFQFRVLERQMGSRKFGSILVFTLLISGALQLAALTSAPWLAKMIPGGAYPVIGAFAVFFNRFIPKMSPRSLSVGGLHFSDKSSTYLLMLVILARD-YHALIPFLGGSFFGLLFSS--TPLGRLRLPS 197
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: V9F720_PHYPR (UBA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=V9F720_PHYPR)

HSP 1 Score: 69.3 bits (168), Expect = 3.950e-9
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 2 
Query: 1109 QWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRP--PLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            Q+WRL++S         + L L  +  FR+LER LGS KFGS L    L+S +++LA     P+     P GP P++ A  V +  +IP   P   ++  +  + K   Y  +LVL   D +++ +    G  + LL+ S  SPL   R+P 
Sbjct:   67 QYWRLISSQLTFHHGLAVSLGLYAVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSAPWLTKTIPGGPYPVIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRD-FHALIPFFGGSFLGLLFSS--SPLGRLRLPS 215
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: A0A833T6G0_PHYIN (Putative DSC E3 ubiquitin ligase complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T6G0_PHYIN)

HSP 1 Score: 66.6 bits (161), Expect = 2.550e-8
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 2 
Query: 1109 QWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRP--PLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            Q+WRL++S         + L L  +  FR+LER LGS KFGS L    L+S +++LA     P+     P GP PI+ A  V +  +IP   P   ++  +  + K   Y  +LVL   D + + +    G  + LL+ S  +PL   ++P 
Sbjct:   49 QYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRD-FRALIPFMGGSFLGLLFRS--TPLGRLQLPS 197
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: D0NK77_PHYIT (UBA domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=D0NK77_PHYIT)

HSP 1 Score: 66.6 bits (161), Expect = 2.610e-8
Identity = 48/152 (31.58%), Postives = 75/152 (49.34%), Query Frame = 2 
Query: 1109 QWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFFRP--PLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            Q+WRL++S         + L L  +  FR+LER LGS KFGS L    L+S +++LA     P+     P GP PI+ A  V +  +IP   P   ++  +  + K   Y  +LVL   D + + +    G  + LL+ S  +PL   ++P 
Sbjct:   49 QYWRLISSQLTFHHGLAVSLGLYTVFQFRVLERQLGSRKFGSILVFVLLISGALQLAALTSSPWLAKTIPGGPYPIIGAFAVYFNKFIPKLHPRSFSVWGLHFSDKSSTYMLMLVLFVRD-FRALIPFMGGSFLGLLFRS--TPLGRLQLPS 197
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: A0A3M6V8B5_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8B5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.100e-8
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 2 
Query:  989 GAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGSRVFGDDGQWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALC-------VEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            GAPV+ + ++   V++   L  +     AL    V     Q+WRL +S         + L L ++  FR+LER LGS KFGS +    L+S +++L          VEF     P GP P+L A+ V +  YIP   P  +++  +  + K   Y  + VL   D + + +    G V+ +L+  H +PL   R+P 
Sbjct:  574 GAPVTYAYSLAVGVASSATLLLDRGHVLALDRDAVL-IRSQYWRLFSSQMTFQHGLAVSLGLYVVFQFRVLERQLGSRKFGSVVVFVMLISGALQLTALSSVSSSLVEFI----PGGPYPVLGALAVYFNRYIPKLQPRTVSVWGMHFSDKSSTYLLIFVLLACD-FRALIPFLGGSVLGMLF--HSTPLGRLRLPS 762
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: K3W5T0_GLOUD (UBA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5T0_GLOUD)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-7
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 2 
Query: 1109 QWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFF--RPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            Q+WRLLT+         +   L ++  FR++ER +GS KFGS +     L+  +ELA  +  P    + P GP  +L A+ V +  YIP   P   +   +  + K   Y  ++V+   +  N+ +S   G +  LL+ S  +PL   R+P 
Sbjct:   34 QYWRLLTNQVTFHHGLAVSFGLYVMFQFRVIERQMGSRKFGSLVVFILSLTSGLELAALMSAPSLARQIPGGPYALLGALAVFFNKYIPKLYPRSFSFSGLNFSDKSSTYLLLIVMLGRNP-NTLLSFAPGALFGLLFSS--TPLARLRLPS 182
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BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Match: A0A8K1CR85_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR85_PYTOL)

HSP 1 Score: 60.5 bits (145), Expect = 2.680e-6
Identity = 51/194 (26.29%), Postives = 94/194 (48.45%), Query Frame = 2 
Query:  989 GAPVSKSLAI-VTAVSTLVVLQNNSQDTAALIGSRVFGDDGQWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAALLSKSIELALCVEFPFF---RPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGNVRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRIPG 1558
            GAPV+ +L++ V A S+  VL N  +     +   +    G  WRL +S             + II  +R+LER +GS KFGS LF    ++ +++++  +  P     R P GP  +L A+ + Y  ++P   P   ++  + ++ K   Y  +LV+   +   + ++   G+ + +L+ S  +PL   R+P 
Sbjct:   10 GAPVTYALSMTVGAASSATVLFNYGRFFK--LDRELVVRHGHLWRLFSSQLAFHHGLAAAFGIYIIFQYRVLERQMGSRKFGSLLFFVLFITAALQMSALLSLPMMLARRLPPGPYALLGALTIFYLKFVPRLQPKAYSLLGLHLSDKSSTYFLLLVILARNP-RTLLAFLPGMFLGVLFSS--TPLSKLRLPS 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig707.18146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LPP7_ECTSI8.850e-12796.50Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6R3_9PHAE3.030e-12697.50UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2D4C2S4_PYTIN5.450e-1128.65UBA domain-containing protein n=1 Tax=Pythium insi... [more]
G4ZVF7_PHYSP4.580e-1032.24UBA domain-containing protein n=4 Tax=Phytophthora... [more]
V9F720_PHYPR3.950e-932.24UBA domain-containing protein n=8 Tax=Phytophthora... [more]
A0A833T6G0_PHYIN2.550e-831.58Putative DSC E3 ubiquitin ligase complex subunit 2... [more]
D0NK77_PHYIT2.610e-831.58UBA domain-containing protein n=3 Tax=Phytophthora... [more]
A0A3M6V8B5_9STRA6.100e-829.44Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3W5T0_GLOUD1.590e-729.61UBA domain-containing protein n=1 Tax=Globisporang... [more]
A0A8K1CR85_PYTOL2.680e-626.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig707contigEcto-sp13_S_contig707:321..2850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score82.4
Seed ortholog evalue2.8e-13
Seed eggNOG ortholog157072.XP_008867160.1
Preferred nameUBAC2
Model size1588
KEGG koko:K01365
KEGG Pathwayko04140,ko04142,ko04145,ko04210,ko04612,ko05205,ko05323,ko05418,map04140,map04142,map04145,map04210,map04612,map05205,map05323,map05418
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010559,GO:0010604,GO:0010605,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023052,GO:0030162,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031399,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032879,GO:0032880,GO:0032933,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0033554,GO:0034613,GO:0035103,GO:0042176,GO:0042177,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045861,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051716,GO:0060049,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070862,GO:0070972,GO:0071501,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0098588,GO:0098791,GO:0098796,GO:1900037,GO:1900039,GO:1901564,GO:1901799,GO:1902494,GO:1902680,GO:1903018,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903508,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897,GO:1990234,GO:2000112,GO:2001141
Exons5
EggNOG free text desc.Ubiquitin-associated domain-containing protein
EggNOG OGsKOG4463@1,KOG4463@2759
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-18_001990.1
EC3.4.22.15
Cds size636
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig707.18146.1prot_Ecto-sp13_S_contig707.18146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig707 1273..2850 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.7341359-UTR-Ecto-sp13_S_contig707:320..12721681463969.7341359-UTR-Ecto-sp13_S_contig707:320..1272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig707 321..1272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.745908-CDS-Ecto-sp13_S_contig707:1272..14091681463969.745908-CDS-Ecto-sp13_S_contig707:1272..1409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig707 1273..1409 +
1681463969.7551184-CDS-Ecto-sp13_S_contig707:1801..19181681463969.7551184-CDS-Ecto-sp13_S_contig707:1801..1918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig707 1802..1918 +
1681463969.7646503-CDS-Ecto-sp13_S_contig707:2216..23681681463969.7646503-CDS-Ecto-sp13_S_contig707:2216..2368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig707 2217..2368 +
1681463969.7763412-CDS-Ecto-sp13_S_contig707:2490..25791681463969.7763412-CDS-Ecto-sp13_S_contig707:2490..2579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig707 2491..2579 +
1681463969.7939162-CDS-Ecto-sp13_S_contig707:2709..28501681463969.7939162-CDS-Ecto-sp13_S_contig707:2709..2850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig707 2710..2850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig707.18146.1

>prot_Ecto-sp13_S_contig707.18146.1 ID=prot_Ecto-sp13_S_contig707.18146.1|Name=mRNA_Ecto-sp13_S_contig707.18146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MLLFSIAADLVAGAPVSKSLAIVTAVSTLVVLQNNSQDTAALIGSRVFGD
DGQWWRLLTSMFPLGSVWELILCLSIIRVFRILERHLGSAKFGSFLFLAA
LLSKSIELALCVEFPFFRPPLGPLPILSAVGVAYYGYIPSTAPAYLTIGN
VRVTGKFFAYAAVLVLAFHDTYNSAMSAGCGVVVALLYWSHLSPLQSFRI
PGRQLFAVRCG*
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mRNA from alignment at Ecto-sp13_S_contig707:321..2850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig707.18146.1 ID=mRNA_Ecto-sp13_S_contig707.18146.1|Name=mRNA_Ecto-sp13_S_contig707.18146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig707:321..2850+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACGCGCTGCAGCTCCTCACACGCCCACGCCGCTTGAAGCATCCCTAA
CTCCATCACCCTTGCCTCCACCTGTGCCGTACACTCCTGATATCTATGCC
GCCCGCCTCACCGCCTCACCCTCCTCACGGATTTGATGTGTCGCTCATGA
GCATGCATGTAGAGCGGTATGCTTCGGTTCACACATACACATCTAAAGCG
GTGACGCAAAAGTTGCACCATGTCGGTAGCATGCAATGCGCACCGGGTCT
GCGGTGCAGTGAAGCCTGTCTGACTGCCTGTCTGGCGGTACTGCTGTACT
TGGTTCGCCATTGAGTCACCTATGACGTCCAAGTTGTGTGTGTTTGGGCA
GCTCCAAGGGATGGGGCGGTGTGTGTCGGGAGGACGACGGGAGTATCTTG
GGGTGTGTAGGCCATCGAAAATATTCTTTCAAAGACATAACTGAGCTAGA
CAAAATCGGAGCTTTTCTCGGGTCTTAAGGGGCAATTCGCGAAAGCAAAA
GACCAGATTCGTAAAGATCCATCTGACGCCGGCGCTCCGGGGGATAAAAA
AGACCAGGACAAGACCGAAATCTGATGTTCGCAAACACCGTGTTTATTGC
GAATTCATGTGTACTCCGGGTGCATTCGAACCCACAACTGCTGTCACCCT
GAAGCTTTCATGATATGGACCACCGGGGGGTGGTATATAGGTGTAGTTCA
GCGTTTGCCCCCAATCCCCCACATGTATTGTGTGGTGTTTATCTCATCAG
TGATGAGCGTCGATGCATGGCTTGGAAGGCGTTTGTCGTATTTGTAAGTT
CAGACGAACACGATTTTTAAAAGTGTGGAGGCTGATGTTTTGGACATCAA
TACATCGAAAAGTACGCCGGCCACCGGTCGCAATCTTCGTTGAGTTTCCT
CTCGGCCGTCTCTCGTGTTATCCTGCTGTGAACCAAAGTTTAAGCATGCC
TAATGCTGTTGTTCTCCATTGCCGCCGATCTCGTAGCTGGAGCTCCTGTG
AGCAAGTCCTTGGCCATCGTCACTGCCGTTTCCACCTTGGTTGTCCTCCA
AAACAACAGCCAAGATACAGCCGCGCTCATCGGTAGTAGGTGAGCCTCGT
GCGACAACGAATGTTGATAGGATTACGAGCGTAACCTTGGATGGAGACTA
CACGTACAACGTATGTCGTAATATTCTCGTTTGTAGACGAGATGTTCTCA
ACGAAAGCGAACAAGGCTACTGCTCGTTGCCGCAGACACGCTAGGGCCAC
CTCCAATAGTTGTGCGCTTTTAATTTATAGGGGGGAGGGTTGGGCAACGT
AGGACCGCCGTGAAGGACAACAGTTAACAAGGGTACCATCGCAGGTCAGT
AGCGAGTCGTGTAGTTTCTTGGTGCTGAACGGAAAATGTCTTGTGCCGTC
GATGCCATGTACATCTGCGTGTGTGCTTCACCATCCGCATTATGTCCTGG
ACACTCCATTTCCGTACCCCCCGGTTTACAGAGTTTTTGGGGACGATGGC
CAATGGTGGCGGCTTCTCACCAGCATGTTTCCACTGGGAAGCGTGTGGGA
GCTGATCCTGTGTCTCAGTATTATCCGAGTGTTCCGGATCCTTGAGAGGT
ATTTGCTGTTCTTGTTCGTGTTCCCGTTTCGTTTGTGGTAGCTGATGCTT
GCAGTTCTCGTTGCCCGGTGGTCTTGCCTACTTCATCGAAAAGCTTCGAT
CGGAGGACAACCAGGAGGGAGCTTTGTGTTGTCTGGTTCTGCAAACAACT
TGCTGGAAATCGACCTTGTACTGGTTATGTAAACACCTTTCTATCCCTTT
GTTGCGTTTGTGCAACACGTACACACATCTATCGTGAATATCGCCGTTGA
GCCCACGTTGAGCACGTGCCTCGCTGATTTCTTTCCGTCCTTGCAGGCAT
CTTGGATCTGCGAAGTTTGGTTCCTTCCTGTTCCTGGCTGCGTTGTTGTC
CAAGAGCATAGAGCTGGCCCTGTGTGTGGAGTTCCCTTTTTTCCGGCCAC
CACTGGGCCCGCTTCCCATCCTGAGTGCTGTTGGGGTAGCTTATTACGGT
GAGACTCTCTTGTGTTTAATCTTAACAGTACCGTGCAAGTCGGATGACAA
GAGACGCGACAGGGCACCGTTGCAAAGCTTCTTTTGACCCGATTCGTGTT
TGATGCGCAACGCACCTCAGGTTACATACCGTCGACTGCACCAGCGTACT
TGACCATCGGGAACGTGCGCGTGACTGGCAAGTTCTTCGCATACGCCGCG
GTGCTGGTGGTGAGCCACATGCGATTTTTCTATTCTCTTGTGTTGCTCCG
GAACAGGCTCAATCAATCCTGATTCAAATCGTTGTTCAAGTTCTCATAGT
GCCCGCACCATGCTGAATCGTGCTGCTGTCCCATGGCAGCTGGCTTTCCA
CGACACGTACAACTCGGCAATGTCTGCCGGGTGCGGTGTTGTGGTGGCGC
TCCTTTATTGGTCACATCTTTCACCACTCCAGAGCTTCCGGATTCCGGGT
CGTCAGTTATTTGCGGTGAGATGCGGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig707:321..2850+

>mRNA_Ecto-sp13_S_contig707.18146.1 ID=mRNA_Ecto-sp13_S_contig707.18146.1|Name=mRNA_Ecto-sp13_S_contig707.18146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig707:321..2850+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTGTTCTCCATTGCCGCCGATCTCGTAGCTGGAGCTCCTGTGAG
CAAGTCCTTGGCCATCGTCACTGCCGTTTCCACCTTGGTTGTCCTCCAAA
ACAACAGCCAAGATACAGCCGCGCTCATCGGTAGTAGAGTTTTTGGGGAC
GATGGCCAATGGTGGCGGCTTCTCACCAGCATGTTTCCACTGGGAAGCGT
GTGGGAGCTGATCCTGTGTCTCAGTATTATCCGAGTGTTCCGGATCCTTG
AGAGGCATCTTGGATCTGCGAAGTTTGGTTCCTTCCTGTTCCTGGCTGCG
TTGTTGTCCAAGAGCATAGAGCTGGCCCTGTGTGTGGAGTTCCCTTTTTT
CCGGCCACCACTGGGCCCGCTTCCCATCCTGAGTGCTGTTGGGGTAGCTT
ATTACGGTTACATACCGTCGACTGCACCAGCGTACTTGACCATCGGGAAC
GTGCGCGTGACTGGCAAGTTCTTCGCATACGCCGCGGTGCTGGTGCTGGC
TTTCCACGACACGTACAACTCGGCAATGTCTGCCGGGTGCGGTGTTGTGG
TGGCGCTCCTTTATTGGTCACATCTTTCACCACTCCAGAGCTTCCGGATT
CCGGGTCGTCAGTTATTTGCGGTGAGATGCGGATAA
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