mRNA_Ecto-sp13_S_contig7068.18145.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7068.18145.1
Unique NamemRNA_Ecto-sp13_S_contig7068.18145.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7068.18145.1 vs. uniprot
Match: D7G7F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F4_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 1.430e-79
Identity = 136/147 (92.52%), Postives = 140/147 (95.24%), Query Frame = 3 
Query:    3 IDSTFPLKVSKSASALPDLVGQRPEVPKTTPIHRVMKKDVAKSATDLRKAFKQCENPYRRGVVSVEQFQAVCIKNGVTVDKEDIDFLLRLHRHKNGGGKYAIPPKWAQAPSPGAPRDTAKEGVRYDEFLRTCLLATSTEVPIVTTAS 443
            IDST P+KVSKSA ALPDLVGQRPEVPKTTPIHRVMKKDVAKSAT+LRKAFKQCENPYRRGVVSVEQFQAVC+KNGVTVDKEDIDFLLRLHRHKNGG KYAIPPKW +APSPGA RDTAKEGVRYDEFLRTCL ATSTEVPIVTT S
Sbjct: 1149 IDSTSPMKVSKSAPALPDLVGQRPEVPKTTPIHRVMKKDVAKSATNLRKAFKQCENPYRRGVVSVEQFQAVCLKNGVTVDKEDIDFLLRLHRHKNGGSKYAIPPKWTRAPSPGASRDTAKEGVRYDEFLRTCLSATSTEVPIVTTIS 1295
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BLAST of mRNA_Ecto-sp13_S_contig7068.18145.1 vs. uniprot
Match: A0A6H5JXC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC8_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.910e-56
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = 3 
Query:  117 DVAKSATDLRKAFKQCENPYRRGVVSVEQFQAVCIKNGVTVDKEDIDFLLRLHRHKNGGGKYAIPPKWAQAPSPGAPRDTAKEGVRYDEFLRTCLLATSTEVPIVTTAS 443
            DVAKSAT+LRKAFKQCENPYRRGVV VEQFQAVC+KNGVTVDKEDIDFLLRLHRHKNGG KYAIPPKW QAPSPG PRDT KEGVRYDEFLRTCL ATSTEVPI+ TAS
Sbjct:  772 DVAKSATELRKAFKQCENPYRRGVVGVEQFQAVCLKNGVTVDKEDIDFLLRLHRHKNGGSKYAIPPKWTQAPSPGDPRDTTKEGVRYDEFLRTCLSATSTEVPILMTAS 880
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BLAST of mRNA_Ecto-sp13_S_contig7068.18145.1 vs. uniprot
Match: A0A836C9J2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.910e-10
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 3 
Query:   48 LPDLVGQRPEVPKTTPIHRVMKKDVAKSATDLRKAFKQCENPYRRGVVSVEQFQAVCIKNGVTVDKEDIDFLLRLHRHKNGGGKYAIPPKWAQAPSPGAPRDTAKEGVRYDEFLRT 395
            LP L G   E+P+T  IHR+M+ D+ +    L+   KQ E+PYRRGVVS + FQ +  K+G+ VD ED+  LL+ HRH+      +I    A     GA    A   ++Y++ LRT
Sbjct: 1303 LPSL-GVSAELPRTQDIHRLMRADMLRVMGALKADLKQHESPYRRGVVSAQDFQRITHKHGLAVDAEDLQALLKAHRHR-AQAYGSISTVSAHKAGHGA---DAMPSLQYNDLLRT 1413
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7068.18145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7F4_ECTSI1.430e-7992.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXC8_9PHAE1.910e-5690.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9J2_9STRA4.910e-1039.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7068contigEcto-sp13_S_contig7068:4482..7774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1032
Hectar predicted targeting categoryother localisation
Exons5
Cds size339
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7068.18145.1prot_Ecto-sp13_S_contig7068.18145.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7068 5068..7209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.5183125-UTR-Ecto-sp13_S_contig7068:4481..50671681463969.5183125-UTR-Ecto-sp13_S_contig7068:4481..5067Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7068 4482..5067 -
1681463969.5726936-UTR-Ecto-sp13_S_contig7068:7209..72901681463969.5726936-UTR-Ecto-sp13_S_contig7068:7209..7290Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7068 7210..7290 -
1681463969.5838706-UTR-Ecto-sp13_S_contig7068:7748..77741681463969.5838706-UTR-Ecto-sp13_S_contig7068:7748..7774Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7068 7749..7774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.5298855-CDS-Ecto-sp13_S_contig7068:5067..52361681463969.5298855-CDS-Ecto-sp13_S_contig7068:5067..5236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7068 5068..5236 -
1681463969.5401015-CDS-Ecto-sp13_S_contig7068:6022..60901681463969.5401015-CDS-Ecto-sp13_S_contig7068:6022..6090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7068 6023..6090 -
1681463969.5505056-CDS-Ecto-sp13_S_contig7068:6576..66701681463969.5505056-CDS-Ecto-sp13_S_contig7068:6576..6670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7068 6577..6670 -
1681463969.5614607-CDS-Ecto-sp13_S_contig7068:7201..72091681463969.5614607-CDS-Ecto-sp13_S_contig7068:7201..7209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7068 7202..7209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7068.18145.1

>prot_Ecto-sp13_S_contig7068.18145.1 ID=prot_Ecto-sp13_S_contig7068.18145.1|Name=mRNA_Ecto-sp13_S_contig7068.18145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MKKDVAKSATDLRKAFKQCENPYRRGVVSVEQFQAVCIKNGVTVDKEDID
FLLRLHRHKNGGGKYAIPPKWAQAPSPGAPRDTAKEGVRYDEFLRTCLLA
TSTEVPIVTTAS*
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mRNA from alignment at Ecto-sp13_S_contig7068:4482..7774-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7068.18145.1 ID=mRNA_Ecto-sp13_S_contig7068.18145.1|Name=mRNA_Ecto-sp13_S_contig7068.18145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7068:4482..7774- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATCGACAGCACCTTCCCACTGAAGGTCGGCGAGTAGGCTACACCAAAG
ACGTCCCACGATGGAAACTTTTTGTTGTCTTGAGGGAGGGAGTCATTTTT
TCTGGGATCTTGTAATATATCTATCTTGTCCAGCTGAGAAGACAAGAAAG
AGGGGTCGTTCTTCGTTTCTCGATGTGTCCGTCTGGTAAACCGTCAGTAG
TGCATTTCATCCACGCTGAAGGGATAGGGGGCCGGATCAATCGTGATACA
CAACAGATTACGGAGGTGCGGAACATCCAGAGCCAAAACAATCGATTCTG
TAGTCCCCTGACACGCACCTTGTGGTATGTCACGAAACGTACAATTTTCT
TGGTCCGGGACATGGTGTCATCCGCTCGAGCTAATGCGTGAGACAGAGAC
TGCATGGGTCTAGGTGTTGGTGTGTCGGCACAAGTTGCATGCTCTGAAGT
AGAGCACGAATTATATCTAACACAATTGCGCTAGGTGTCAAAGAGTGCCT
CCGCGCTGCCTGACCTCGTGGGACAACGGCCTGAGGTGCCCAAGACCACG
CCCATTCACCGCGTCATGAAGAAGTAAGAGTCGTACGCTGAGCTACCGTG
TGGGGGTTTCAGCGATGTTTCTTCCTGGGGTAAATTGACAAGATTTCACG
CTCTGTTGTACGCTGTCCGATCGGACTGCGCAGGGTCCTGTGAGACTAAA
CAATTGCTCAATCCCCAGGGGTTAGCAGCAAATATTTTGGTAGGATATCA
TCAAAGTCTTGGTCTCTCGTCACAATTCCTCGTTGAGCCCTTAATACTCT
AGCTAGCTGGGCAGAAGCTCTGACACAACGCACATGCTAAGCGACCAAGA
TCCTACGAGAATCTTGCTTGATATAGAGCCTACGAATGAGACAATGTTTG
TGATATGTGTGTTCAGAGTGCCTAACACAGTGGCACGGCTGCGGTCGATG
ACAAAGGTCGTGGTTTTCGTGACGACGTATCTTCTTTGTCTTGGAAACAT
ACATATGAGAACATCCGTGTGATTTTGAACGAACCTGGGGTTGACACGTC
ATCAGGCTAGGAGTTGCTCTCGATAACGGTTCTATGTTCCGTCTTGTGCG
GTAGGGACGTGGCGAAGAGCGCGACAGACCTCCGGAAAGCTTTCAAGCAG
TGCGAAAACCCTTACCGCCGTGGCGTCGTTAGCGTGGAGCAATTCCAGGT
ATGATACGTGGCAACCTACGTCCACTATTTCTGCTGTGGTTGTTGTTTTT
CCTAATGTTGCTATTGCTTCTATCGTAAAAGTGTAAGGAGTTGTGTCCCT
CCTCTCGCTCTGACGGAACTTTTCGCACAATCGGATATTGTGCGACACAA
AACGGATCGTCACTGAAACATCTGATCATAGCCCCCACCGTCACTGAGTA
TCAATCTCTCTCCCAAAGTTTGCTTGAATACCCAAGCTCCACCCACTTTT
TCGGCTCCAAGCCTCCAGGGGTCTTCATCAAGTGAGAAACCATCCTTGGT
TCCCGTTAAATCGTTGCCTCTAGGTTCAAGCTTTTGTGTGAGTTTACTGC
AGTGCATGGATTGAAGCGACATCGCTTTTTCTGTGCGTGTGTATTATCAC
GTGGCAAGCGGTTCATGTGGCATAAAATTTAAATAGTATAGTGAACCCTG
TTGTTTGTGCTCCCGTTTGCCTACTCTCCTGCAGGCGGTGTGCATCAAGA
ACGGAGTGACCGTGGACAAGGAGGATATCGACTTCCTCTTACGACTGCAC
CGGTATGATGTGCGGCTGCCGTTGTTTGGCAACAACAACAAATATGGAGT
CTCTAACCTTACCTAAGGACAGGTTCGCGGCTGCGGTCCCCTACATACCC
TTTCACTGCCCTCTCAAATTCGTGCAAGTTGGAATATTCCCGACGTTGAG
GAGTCAACAACAGTCTTCCCGCTCCCTGTCGGGCTTGTTTGTAGGGAATG
TCGAAGCACTGAGTGTGGACAGTGCATGGGAAGGTTCCTCTCGTCTTCAA
CAGTGCAGTCCAGCAGCACATAATGTTTTCAGCTTCCTCGCATCGGAAAA
ATATATGTATATATATATTTCTATTACGGTCTGCCCGTGCTGATTTGAAG
TGTTTCCCCGGTATTTCGGGGAAAATACGTACCAAATGTACAGAACGGTA
TGGTGTGTAGTATACAGGAGATGGCGTGTGGACTGTGACGTATGTATACG
TTTTTGCCATTATTCTGACATCTGTCACACAAAAAACCGCTTCAGGGTGG
ACAGGGTAAGGGCAACAAGTCTGTTGCGTGCTCCACAATACTCCGACACC
CCTCACGCTAGCAACGTTCGAGGGCACCCTTCAGTGGATATGGAATTGTT
CTGGGCCTAGGCGTGACAAGGCTATCGTGAGTTTCTTGCGCCAAAATTAC
GATGAGTGAGATCGCCGAAAGCACGGTGTGGTGCAAATCAGGGGAGTCCC
TGCCTCAGTTACGAAAAAGGTTCGATCCCCTCCCTCCCCATTATACACTC
TACTCCCGTCTTTCGCCTCTCTCTCCTTTCTATGTCAGGCACAAGAACGG
GGGCGGCAAGTATGCCATCCCGCCGAAATGGGCGCAGGCCCCGTCGCCCG
GTGCTCCGCGAGACACGGCTAAGGAAGGGGTACGTTACGACGAGTTTCTC
CGCACGTGCCTCTTGGCCACATCTACCGAGGTGCCCATTGTGACGACTGC
AAGCTAACGAAGAGCCAGACCATGAGGAGCTGCAGATGACCAAATCCAAA
CGCAGTTTGTGTCGTAAGATCGTGGAAATGATCGCCCGCTGTCGACGTGA
GCGGGGGCACTTCCTCATGGCGAGAACCGCGAGCTGGCCCACGAGGCTAC
ACCAAACCCAGATTTCATAACAACGGATCCGCGCAGCCCTCAAATGGCAT
CATTTGTACAGCGGTGATGTGGGGTTGCGTTACATCTCTCGGTGTCATGG
AATTGCAAGCCAGCAGGTTTGGTGACGACGAAGTAGTCGCGGTTCGTAGA
GTTGAACGATAACTACTAGTACCGTAGAACGTGCGGTAACAAGCCTCTTT
TTCGAATTTCTACCTCGGGAGGTACGTCCAGTGCCTACGGTACCGGCGTG
GAAGGGTTTAACTTCATGCAGTCGGCGCGTTGTAGAGTAAGTCATTCCTG
TGTACAGTCCATTTTCAATGAGATGTGAGGTAGAAAGCGAAAATCATTCA
ACAGTAGTAGTCCGTAGTCCGTACATGTAAACAAGTGTGTTTATTGGACG
CGATGGGCGCAGGCACTACGCCGACTGAAAGGCGGGAGTGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7068:4482..7774-

>mRNA_Ecto-sp13_S_contig7068.18145.1 ID=mRNA_Ecto-sp13_S_contig7068.18145.1|Name=mRNA_Ecto-sp13_S_contig7068.18145.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7068:4482..7774- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAGGACGTGGCGAAGAGCGCGACAGACCTCCGGAAAGCTTTCAA
GCAGTGCGAAAACCCTTACCGCCGTGGCGTCGTTAGCGTGGAGCAATTCC
AGGCGGTGTGCATCAAGAACGGAGTGACCGTGGACAAGGAGGATATCGAC
TTCCTCTTACGACTGCACCGGCACAAGAACGGGGGCGGCAAGTATGCCAT
CCCGCCGAAATGGGCGCAGGCCCCGTCGCCCGGTGCTCCGCGAGACACGG
CTAAGGAAGGGGTACGTTACGACGAGTTTCTCCGCACGTGCCTCTTGGCC
ACATCTACCGAGGTGCCCATTGTGACGACTGCAAGCTAA
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