mRNA_Ecto-sp13_S_contig70678.18144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70678.18144.1
Unique NamemRNA_Ecto-sp13_S_contig70678.18144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70678.18144.1 vs. uniprot
Match: D8LJM6_ECTSI (RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.840e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   16 QINTGDVEEVDGLFHDAKASAQLLTDDAEGYLH 114
            +IN GDVEEVDGLFHDAKASAQLL DDAEGYLH
Sbjct:  423 KINIGDVEEVDGLFHDAKASAQLLADDAEGYLH 455
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BLAST of mRNA_Ecto-sp13_S_contig70678.18144.1 vs. uniprot
Match: A0A7S1EGJ8_HEMAN (RuvB-like helicase n=8 Tax=Cryptophyceae TaxID=3027 RepID=A0A7S1EGJ8_HEMAN)

HSP 1 Score: 47.0 bits (110), Expect = 7.640e-5
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   19 INTGDVEEVDGLFHDAKASAQLLTDDAEGYLH 114
            I +GD+EEVDGLF+DAK+SA+LL + A+ Y+H
Sbjct:  476 IASGDIEEVDGLFYDAKSSAKLLAEKADRYIH 507
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70678.18144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJM6_ECTSI5.840e-1190.91RuvB-like helicase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S1EGJ8_HEMAN7.640e-562.50RuvB-like helicase n=8 Tax=Cryptophyceae TaxID=302... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70678contigEcto-sp13_S_contig70678:564..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score65.9
Seed ortholog evalue4.9e-09
Seed eggNOG ortholog2880.D8LJM6
Preferred nameRUVBL1
Model size117
KEGG koko:K04499
KEGG Pathwayko04310,map04310
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000123,GO:0000166,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000491,GO:0000492,GO:0000785,GO:0000790,GO:0000812,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0002119,GO:0002164,GO:0002682,GO:0002831,GO:0003674,GO:0003678,GO:0003712,GO:0003713,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006417,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009791,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010755,GO:0010756,GO:0010941,GO:0010954,GO:0015630,GO:0016020,GO:0016043,GO:0016363,GO:0016462,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017025,GO:0017076,GO:0017111,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030111,GO:0030162,GO:0030177,GO:0030554,GO:0031011,GO:0031055,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031497,GO:0031929,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032270,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033202,GO:0034080,GO:0034248,GO:0034250,GO:0034399,GO:0034508,GO:0034622,GO:0034708,GO:0034724,GO:0034728,GO:0035060,GO:0035097,GO:0035267,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040008,GO:0042127,GO:0042623,GO:0042981,GO:0043044,GO:0043067,GO:0043138,GO:0043139,GO:0043140,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043531,GO:0043543,GO:0043900,GO:0043933,GO:0043967,GO:0043968,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044703,GO:0045088,GO:0045727,GO:0045862,GO:0045893,GO:0045935,GO:0046620,GO:0048232,GO:0048285,GO:0048507,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048638,GO:0048731,GO:0048856,GO:0050776,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060303,GO:0060420,GO:0060828,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070209,GO:0070603,GO:0070613,GO:0070646,GO:0070647,GO:0070925,GO:0071103,GO:0071339,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0090263,GO:0090307,GO:0097159,GO:0097255,GO:0097346,GO:0097367,GO:0140014,GO:0140097,GO:0140110,GO:1900150,GO:1901265,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1902850,GO:1903047,GO:1903317,GO:1903319,GO:1903506,GO:1903508,GO:1904837,GO:1904949,GO:1990234,GO:1990904,GO:2000026,GO:2000072,GO:2000112,GO:2000269,GO:2001141
Exons1
EggNOG free text desc.ATP-dependent 5'-3' DNA helicase activity
EggNOG OGsCOG1224@1,KOG1942@2759
Cds size117
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.4831705-CDS-Ecto-sp13_S_contig70678:563..6801681463969.4831705-CDS-Ecto-sp13_S_contig70678:563..680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70678 564..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70678.18144.1prot_Ecto-sp13_S_contig70678.18144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70678 564..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70678.18144.1

>prot_Ecto-sp13_S_contig70678.18144.1 ID=prot_Ecto-sp13_S_contig70678.18144.1|Name=mRNA_Ecto-sp13_S_contig70678.18144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MRVTSQINTGDVEEVDGLFHDAKASAQLLTDDAEGYLH*
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mRNA from alignment at Ecto-sp13_S_contig70678:564..680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70678.18144.1 ID=mRNA_Ecto-sp13_S_contig70678.18144.1|Name=mRNA_Ecto-sp13_S_contig70678.18144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70678:564..680- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGTTACCTCTCAGATTAATACCGGGGACGTGGAGGAGGTGGACGG
GCTCTTCCATGACGCCAAGGCGTCCGCGCAGCTGCTCACCGACGACGCAG
AGGGGTACCTCCACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70678:564..680-

>mRNA_Ecto-sp13_S_contig70678.18144.1 ID=mRNA_Ecto-sp13_S_contig70678.18144.1|Name=mRNA_Ecto-sp13_S_contig70678.18144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70678:564..680- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGTTACCTCTCAGATTAATACCGGGGACGTGGAGGAGGTGGACGG
GCTCTTCCATGACGCCAAGGCGTCCGCGCAGCTGCTCACCGACGACGCAG
AGGGGTACCTCCACTAG
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