mRNA_Ecto-sp13_S_contig7067.18142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7067.18142.1
Unique NamemRNA_Ecto-sp13_S_contig7067.18142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7067.18142.1 vs. uniprot
Match: D7FSY8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSY8_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 8.510e-21
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:  328 ASTFAVATILYAEELSSEGVVLFALVMPLGSTVIVMVVFMCTLYAAATGSLFAPDPVLSVLLEEPP 525
            +STFAVATILYAEELSSEGVVLFALV+ LGS+VIVMVVF+CTLY+AATGSLFAPDPVLSV LEE P
Sbjct:  485 SSTFAVATILYAEELSSEGVVLFALVVSLGSSVIVMVVFVCTLYSAATGSLFAPDPVLSVRLEELP 550
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7067.18142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSY8_ECTSI8.510e-2187.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7067contigEcto-sp13_S_contig7067:833..2221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score105.1
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D7FSY8
Model size1389
Hectar predicted targeting categorysignal anchor
GOsGO:0000302,GO:0001101,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006873,GO:0006950,GO:0006970,GO:0006979,GO:0008150,GO:0008308,GO:0008509,GO:0009270,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010118,GO:0010119,GO:0010193,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0015711,GO:0016020,GO:0016021,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0030104,GO:0031224,GO:0032501,GO:0033993,GO:0034220,GO:0042221,GO:0042493,GO:0042592,GO:0044425,GO:0044464,GO:0046677,GO:0048871,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051179,GO:0051234,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071944,GO:0072347,GO:0090332,GO:0097305,GO:0098656,GO:1901700,GO:1902456
Exons1
EggNOG free text desc.voltage-gated anion channel activity
EggNOG OGs28IA4@1,2QQKN@2759
Cds size315
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.3299992-UTR-Ecto-sp13_S_contig7067:832..10451681463969.3299992-UTR-Ecto-sp13_S_contig7067:832..1045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7067 833..1045 +
1681463969.3630807-UTR-Ecto-sp13_S_contig7067:1360..22211681463969.3630807-UTR-Ecto-sp13_S_contig7067:1360..2221Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7067 1361..2221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.3517072-CDS-Ecto-sp13_S_contig7067:1045..13601681463969.3517072-CDS-Ecto-sp13_S_contig7067:1045..1360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7067 1046..1360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7067.18142.1prot_Ecto-sp13_S_contig7067.18142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7067 1046..1360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7067.18142.1

>prot_Ecto-sp13_S_contig7067.18142.1 ID=prot_Ecto-sp13_S_contig7067.18142.1|Name=mRNA_Ecto-sp13_S_contig7067.18142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MYSNFNLPCRHFFSVILLPPIPGRTFRTWHCPLLLVPEASTFAVATILYA
EELSSEGVVLFALVMPLGSTVIVMVVFMCTLYAAATGSLFAPDPVLSVLL
EEPP*
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mRNA from alignment at Ecto-sp13_S_contig7067:833..2221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7067.18142.1 ID=mRNA_Ecto-sp13_S_contig7067.18142.1|Name=mRNA_Ecto-sp13_S_contig7067.18142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7067:833..2221+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCCGGTCTGACTGATCGGAGCAGCTTAGAGGGAATAACCCTGACACC
GCATTCTTCATGCATTTCACGTGGTTGAATGTTCTCGCTTTGCTGCTCCT
GAGTTTTACTCACCTGTTGTGCGCATGATGTTTATGTTGTATCGAAAAGT
AACGCTAGTGTTCTTGGTTGAGTTTGGGCGCGACTCACCACACCTAAAAA
TTATGGTGATGGCATGTACTCGAATTTTAACCTGCCTTGCCGTCACTTTT
TCTCCGTGATCCTCTTGCCTCCTATCCCCGGACGCACGTTCCGCACGTGG
CACTGCCCTTTGCTCTTGGTACCGGAAGCCTCCACATTTGCCGTCGCGAC
GATCCTGTACGCCGAGGAGCTGTCGAGCGAGGGAGTGGTTCTGTTCGCCC
TCGTCATGCCTCTGGGATCGACTGTGATAGTGATGGTGGTATTCATGTGC
ACTCTTTATGCAGCAGCAACAGGATCTCTCTTCGCTCCCGACCCGGTTCT
CTCGGTCCTGCTTGAAGAGCCGCCTTAGTTGTTGTTCAGGACGGAACTGA
CATTCGCCGGCCAAAGATGCCTGTGACATAACTTAAATGTTGTCGGAGGA
CCGAGAATGGAAACCCGCGTTGAGTGGTAATCCTTTAGAGTTTGGTGTCT
CATAGAATTCCTGCTACGCTTCCCGAGGAGTCTGAGCGTCAGCTTCTACT
GTTCTTCGGGGTTTTATTCCTTTCTTTTGTTGTTGTGTCTACGGCTTTCG
TAGTTTTGGCGTTTTTCGTGGTAATTGTGGCAATCTGGTCGTCAGTGAGT
AGACAATGGGCATCAGCGGAAGGATTTTGTGGGTTTCGATGACGGTGCAG
ACCAGCATGTATATCGGTATGACTGGGGAGACGGGGCTTGCAAGGCAGCC
CCACGGGCTGATAGCTTACGGAATGAGAAATACATCACAGTCAACAAAAA
GCATCCTGTGAAGCTGTGCCAAAGAGGCACGTAGAAAGTCATAGAAGTAG
ACTTTCGGGGTAAGAAGCCTCTGTGTTTTTTTAATGCCCTCGCATCCCAG
TTTGTGACGAGACATTCGCGCCTAAGGATGATATCGCTGTAGTGAGTACG
AAACAAAGCAATACGTGAAGCGGACATGTGGCCCGATTGCCCACCTCTGA
CAAACTCGCGGTACCAAGCTTCAGGCCGATTTGGTGTGCACCGTTGTGTA
GTAAATATTGAGGAACGTGGAGTGAAGTTGAATTGTTGACATGAGTATGC
CACACGAAGCTCTAACCCTTGCACATACTTACTCTGTCCCATAAAGCTAG
TCGGTTATGGGCGACAAGTCGTTCGTGAACCTAGAGGTTGAACCTAACTT
TGTTGCAAGGTTCGTTGGAAGCTGGCGTGTAGACGATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7067:833..2221+

>mRNA_Ecto-sp13_S_contig7067.18142.1 ID=mRNA_Ecto-sp13_S_contig7067.18142.1|Name=mRNA_Ecto-sp13_S_contig7067.18142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7067:833..2221+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCGAATTTTAACCTGCCTTGCCGTCACTTTTTCTCCGTGATCCT
CTTGCCTCCTATCCCCGGACGCACGTTCCGCACGTGGCACTGCCCTTTGC
TCTTGGTACCGGAAGCCTCCACATTTGCCGTCGCGACGATCCTGTACGCC
GAGGAGCTGTCGAGCGAGGGAGTGGTTCTGTTCGCCCTCGTCATGCCTCT
GGGATCGACTGTGATAGTGATGGTGGTATTCATGTGCACTCTTTATGCAG
CAGCAACAGGATCTCTCTTCGCTCCCGACCCGGTTCTCTCGGTCCTGCTT
GAAGAGCCGCCTTAG
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