mRNA_Ecto-sp13_S_contig70655.18141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70655.18141.1
Unique NamemRNA_Ecto-sp13_S_contig70655.18141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70655.18141.1 vs. uniprot
Match: D8LG54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG54_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.050e-40
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:    1 PEPGTQVVSKARLIVMLNERPGILLERFPHHVDNILRVVARMKTESDAGMTLAEFRENAGRVLREAGGGIK 213
            PEPGTQ+VSKARLIVMLNERPGILLERFPHHVDNILR VARMKTESD GMTL EFRENAGRVLREAGGGIK
Sbjct:    4 PEPGTQLVSKARLIVMLNERPGILLERFPHHVDNILRAVARMKTESDVGMTLTEFRENAGRVLREAGGGIK 74
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BLAST of mRNA_Ecto-sp13_S_contig70655.18141.1 vs. uniprot
Match: A0A836CM98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM98_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.100e-11
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:   10 GTQVVSKARLIVMLNERPGILLERFPHHVDNILRVVARMKTESDAGMTLAEFRENAGRVLREAGG 204
            GT+ + +A ++VMLN  P +LLERFPHH + I + +A++ TE++  MT  EF+  A   L + GG
Sbjct:    1 GTRAIRRAHMVVMLNNNPTLLLERFPHHANEIKKSIAKVVTETEGLMTWKEFKVAAETALSQPGG 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70655.18141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG54_ECTSI2.050e-4094.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM98_9STRA1.100e-1143.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70655contigEcto-sp13_S_contig70655:330..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size216
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-11_001900.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.2982461-CDS-Ecto-sp13_S_contig70655:329..5451681463969.2982461-CDS-Ecto-sp13_S_contig70655:329..545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70655 330..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70655.18141.1prot_Ecto-sp13_S_contig70655.18141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70655 330..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70655.18141.1

>prot_Ecto-sp13_S_contig70655.18141.1 ID=prot_Ecto-sp13_S_contig70655.18141.1|Name=mRNA_Ecto-sp13_S_contig70655.18141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
PEPGTQVVSKARLIVMLNERPGILLERFPHHVDNILRVVARMKTESDAGM
TLAEFRENAGRVLREAGGGIK*
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mRNA from alignment at Ecto-sp13_S_contig70655:330..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70655.18141.1 ID=mRNA_Ecto-sp13_S_contig70655.18141.1|Name=mRNA_Ecto-sp13_S_contig70655.18141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70655:330..545- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGAGCCGGGAACTCAGGTGGTTTCCAAGGCAAGACTTATCGTGATGCT
CAACGAGAGGCCGGGCATCCTGTTGGAGCGCTTCCCGCACCACGTGGATA
ACATCCTGCGAGTCGTGGCCAGGATGAAGACGGAGAGTGATGCGGGCATG
ACCCTCGCGGAGTTCCGCGAGAACGCCGGAAGGGTGCTCCGGGAAGCAGG
GGGCGGCATCAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70655:330..545-

>mRNA_Ecto-sp13_S_contig70655.18141.1 ID=mRNA_Ecto-sp13_S_contig70655.18141.1|Name=mRNA_Ecto-sp13_S_contig70655.18141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70655:330..545- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGAGCCGGGAACTCAGGTGGTTTCCAAGGCAAGACTTATCGTGATGCT
CAACGAGAGGCCGGGCATCCTGTTGGAGCGCTTCCCGCACCACGTGGATA
ACATCCTGCGAGTCGTGGCCAGGATGAAGACGGAGAGTGATGCGGGCATG
ACCCTCGCGGAGTTCCGCGAGAACGCCGGAAGGGTGCTCCGGGAAGCAGG
GGGCGGCATCAAATGA
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