mRNA_Ecto-sp13_S_contig12142.1814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12142.1814.1
Unique NamemRNA_Ecto-sp13_S_contig12142.1814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A6H5KHN1_9PHAE (Str_synth domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.270e-32
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEV 165
            GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVE+
Sbjct:  224 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEL 278
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A835YS31_9STRA (Str_synth domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS31_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.350e-16
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEV 165
            G   ++DSSWK+ R +NR +I+D AP GRLLRFDP  G L T++CGLHF NGV +
Sbjct:  225 GTFLITDSSWKHARFNNRLEILDAAPRGRLLRFDPADGSLKTLLCGLHFANGVVI 279
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A7S2V5T4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5T4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 8.490e-16
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    7 VFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEVS 168
            ++ +D+S+K  RA NR ++VDGAP GRLLR+  GSG +  V+CGLHFPNGV+VS
Sbjct:  138 IYFTDTSYKNTRALNRAEVVDGAPRGRLLRYSLGSGAVEVVVCGLHFPNGVQVS 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A7S2V6X8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6X8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    7 VFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEVS 168
            ++ +D+S+K  RA NR ++VDGAP GRLLR+  GSG +  V+CGLHFPNGV+VS
Sbjct:  605 IYFTDTSYKNTRALNRAEVVDGAPRGRLLRYSLGSGAVEVVVCGLHFPNGVQVS 658
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A482SBF4_9ARCH (Str_synth domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBF4_9ARCH)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-14
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    7 VFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVE 162
            +F SDSS+ + R+ NR + +DGAP GRL R++  +  LH VMCGLHFPNGVE
Sbjct:   45 IFFSDSSYLHTRSENREEALDGAPRGRLFRYNLHTKQLHVVMCGLHFPNGVE 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A7S3XUQ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUQ6_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 2.450e-14
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    7 VFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEVS 168
            V+ +++S+K  R  NR ++VDGAP GRLL+ D G+G    +MCGLHFPNG+E S
Sbjct:  298 VYFTETSYKNSRVKNRAEVVDGAPRGRLLKHDLGTGQTEALMCGLHFPNGIEAS 351
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A7S3HRQ2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRQ2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.670e-12
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVE 162
            G V  +DSS ++ R++NR +I+DGAP GRL ++DP +  +  ++CGLHFPNGV+
Sbjct:  215 GKVVFTDSSDRHTRSNNRPEILDGAPRGRLFQYDPVTQGVSLLLCGLHFPNGVQ 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: A0A3A9YY81_9ACTN (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Micromonospora endolithica TaxID=230091 RepID=A0A3A9YY81_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 6.390e-12
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEVS 168
            G V+ +DSS+++P +H +RD+++  PNGR+L + PGSG    V  GL+FPNG+ ++
Sbjct:  146 GTVYFTDSSYRFPVSHWKRDLLEHRPNGRVLAYHPGSGRTEVVCAGLYFPNGIALT 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: UPI001C058939 (SMP-30/gluconolactonase/LRE family protein n=1 Tax=Actinoplanes bogorensis TaxID=1610840 RepID=UPI001C058939)

HSP 1 Score: 67.8 bits (164), Expect = 6.410e-12
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEVS 168
            G ++ SDSS ++P +H RRD+++  PNGR+L +DP SGD+  V  G +FPNGV ++
Sbjct:  147 GTIYFSDSSNRFPVSHWRRDLLEHRPNGRVLVYDPSSGDVDVVAEGFYFPNGVALT 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Match: W1NL35_AMBTC (Str_synth domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NL35_AMBTC)

HSP 1 Score: 67.4 bits (163), Expect = 9.700e-12
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFPNGVEVS 168
            G ++ +D+S+KY   H+  DI +G P+GRLLRF+P +G+ H ++ GL+F NG+ +S
Sbjct:  170 GTIYFTDASYKYDLDHHMLDIFEGRPHGRLLRFEPSTGETHVLLKGLYFANGLALS 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12142.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHN1_9PHAE1.270e-3298.18Str_synth domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YS31_9STRA3.350e-1658.18Str_synth domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2V5T4_9STRA8.490e-1659.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V6X8_9STRA1.250e-1559.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SBF4_9ARCH1.200e-1457.69Str_synth domain-containing protein n=1 Tax=archae... [more]
A0A7S3XUQ6_HETAK2.450e-1453.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3HRQ2_9STRA5.670e-1250.00Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A3A9YY81_9ACTN6.390e-1244.64SMP-30/gluconolactonase/LRE family protein n=1 Tax... [more]
UPI001C0589396.410e-1248.21SMP-30/gluconolactonase/LRE family protein n=1 Tax... [more]
W1NL35_AMBTC9.700e-1244.64Str_synth domain-containing protein n=1 Tax=Ambore... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12142contigEcto-sp13_S_contig12142:3992..5070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score67.8
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog1246995.AFR_28055
Model size171
KEGG rclassRC01072,RC01568
KEGG koko:K01757
KEGG ReactionR03738
KEGG Pathwayko00901,ko01100,ko01110,map00901,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.Strictosidine synthase
EggNOG OGs2GIW1@201174,4DB33@85008,COG3386@1,COG3386@2
EC4.3.3.2
Cds size171
COG Functional cat.G
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.4614573-CDS-Ecto-sp13_S_contig12142:3991..40511681462645.4614573-CDS-Ecto-sp13_S_contig12142:3991..4051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12142 3992..4051 +
1681462645.4722023-CDS-Ecto-sp13_S_contig12142:4959..50701681462645.4722023-CDS-Ecto-sp13_S_contig12142:4959..5070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12142 4960..5070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12142.1814.1prot_Ecto-sp13_S_contig12142.1814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12142 3992..5070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12142.1814.1

>prot_Ecto-sp13_S_contig12142.1814.1 ID=prot_Ecto-sp13_S_contig12142.1814.1|Name=mRNA_Ecto-sp13_S_contig12142.1814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
GIVFLSDSSWKYPRAHNRRDIVDGAPNGRLLRFDPGSGDLHTVMCGLHFP
NGVEVSK
back to top

mRNA from alignment at Ecto-sp13_S_contig12142:3992..5070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12142.1814.1 ID=mRNA_Ecto-sp13_S_contig12142.1814.1|Name=mRNA_Ecto-sp13_S_contig12142.1814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12142:3992..5070+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCGTTTTCCTGTCCGACAGCAGCTGGAAGTACCCACGCGCCCACAA
CCGAAGAGACGTGAGTCGACCGATCTTTCGATAATCCATTTCTCGCCGAA
TGAACGAAGAGAGGACAAATCAGTAGATGATTTGGTTTGCGAGGTTGTCC
CTTTAGTCCTTGTACCATCTTTCAAGAGTAACAAGGCCCTCCCTACCTGG
TGGTGTGCTTGAATTCATTCACGGATGTTTTTGCACGCTAGCACACCAGC
AAAACCACATACGTACATCAGTCCCCATCCGTAGTACAATCTCCGGGATA
GGTCCTTGAACGAAACCGTAAGTGTGGTTCCTGGACCCGCTGCTGGTGAT
TCAAGTAGCCCTCGCTTCGCTTTCGGCGACGACTCTTCAATCAACCCCTT
TCCTTGAGGGAATGAAGTAATAAAATTCCGTTTCTTGAGAATGCGGTCAT
CATCTCTGGGGAGGGGACCCGTCTGTTGAAAGCACCCCCCCCTCATCTCT
TCAAACCAAACCCCGGCTCTTCGAGCAGTAAACCCACGCCTTCAAAGAGG
GAATCGATCATCTCTTCGAAGGCAAGAACATGTATCTCAGGAGGTCGTGC
ATCTCTCCGAAGCTGACCACAACCCATCCCTGTTCAGAGTTGACCCTTCT
CTCTTCAGAGATGGATCAATCAAGTTATTTTTTTTGTTCTGTTTCCCTCT
CGTCTTCGCAAACTAGTCGTTTGTCGGTAGATCTTCGACGGAGCTCCGAA
CGGTAACCCCATCCGTTCAGAGCTCACCCAACTTCAGAGGCGATCATTAT
TTTTTTTGTTCTGTGTCCATCTTGTCTTCGACGGTCGGTCTCGGTCGTTT
GTCGGCCGATCCATTTCAGACATGATTATTCAATTTTTGTTTTTTGTTTC
GCCCTCGCAATTTTTGTTTTTTTTTTCCCCTCGCCATCGCCGGACGGCTT
CCTGTCGTTCATCGGTAGATCGTCGACGGAGCCCCGAACGGCCGACTCCT
GCGGTTCGACCCCGGCTCCGGGGACCTTCACACGGTCATGTGCGGGTTGC
ATTTCCCCAACGGAGTGGAGGTGAGTAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12142:3992..5070+

>mRNA_Ecto-sp13_S_contig12142.1814.1 ID=mRNA_Ecto-sp13_S_contig12142.1814.1|Name=mRNA_Ecto-sp13_S_contig12142.1814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12142:3992..5070+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATCGTTTTCCTGTCCGACAGCAGCTGGAAGTACCCACGCGCCCACAA
CCGAAGAGACATCGTCGACGGAGCCCCGAACGGCCGACTCCTGCGGTTCG
ACCCCGGCTCCGGGGACCTTCACACGGTCATGTGCGGGTTGCATTTCCCC
AACGGAGTGGAGGTGAGTAAG
back to top