mRNA_Ecto-sp13_S_contig70651.18140.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70651.18140.1
Unique NamemRNA_Ecto-sp13_S_contig70651.18140.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: D8LNX3_ECTSI (Tubulin folding cofactor D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX3_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 8.560e-50
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDSCLRDS 258
            QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS LRDS
Sbjct:   83 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDSGLRDS 168
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: A0A6H5KH41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH41_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.880e-41
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   31 MFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDSCLRDS 258
            MFC+IYQLCR+RGAKAV RLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS LRDS
Sbjct:    1 MFCMIYQLCRLRGAKAVARLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDSSLRDS 76
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: D0NUW3_PHYIT (Tubulin-specific chaperone D, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NUW3_PHYIT)

HSP 1 Score: 119 bits (299), Expect = 1.470e-29
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +F +IYQLC+VRG K VV+L+PHE +D EP +H LQ+QD  D+S WETRY LLLWLSML LVPFD++TIDS
Sbjct:  102 QVYRNPRLHKLFQIIYQLCKVRGYKTVVKLLPHEVSDFEPTLHLLQSQDRTDHSAWETRYVLLLWLSMLCLVPFDLNTIDS 182
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: W2PE43_PHYPN (TFCD_C domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=W2PE43_PHYPN)

HSP 1 Score: 115 bits (289), Expect = 3.290e-28
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +F ++YQLC+VRG K +V+L+PHE +D EP +  LQ+QD  D+S WETRY LLLWLSML LVPFD++TIDS
Sbjct:  109 QVYRDPRLHKLFQIVYQLCKVRGYKTIVKLLPHEVSDFEPTLQLLQSQDRTDHSAWETRYVLLLWLSMLCLVPFDLNTIDS 189
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: A0A662Y9P7_9STRA (TFCD_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9P7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.490e-28
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +F +IY LC+VRG K VV+L+PHE +D EP +  LQ+QD DD++ WETRY LLLWLSML LVPFD++TIDS
Sbjct:  265 QVYRDPKLHKLFQLIYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRDDHAAWETRYVLLLWLSMLCLVPFDLNTIDS 345
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: G4Z932_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z932_PHYSP)

HSP 1 Score: 114 bits (285), Expect = 5.190e-28
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDSCLRDS 258
            QV+  P+LH +F ++Y LC+VRG K VV+L+PHE +D EP +  LQ+QD  D+S WETRY LLLWLSML LVPFD++TIDS    S
Sbjct:  107 QVYRNPRLHKLFQLVYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRADHSAWETRYVLLLWLSMLCLVPFDLNTIDSAAESS 192
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: M4BSB0_HYAAE (TFCD_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BSB0_HYAAE)

HSP 1 Score: 115 bits (287), Expect = 6.110e-28
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +F ++Y LC+VRG K VV+L+PHE +D EP +  LQ+QD  D+STWETRY LLLWLS+L LVPFD++TIDS
Sbjct:   32 QVYHNPRLHKLFQIVYHLCKVRGYKTVVKLLPHEVSDFEPTLELLQSQDRSDHSTWETRYVLLLWLSILCLVPFDLNTIDS 112
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: A0A484DYP7_BRELC (TFCD_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DYP7_BRELC)

HSP 1 Score: 115 bits (287), Expect = 6.120e-28
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +F ++YQLC+VRG K VV+L+PHE +D EP +  LQ+QD  DYSTWE RY LLLWLSML LVPF + TIDS
Sbjct:  106 QVYRNPRLHKLFQIVYQLCKVRGYKTVVKLLPHEVSDFEPTVQLLQSQDRSDYSTWEMRYVLLLWLSMLCLVPFHLTTIDS 186
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: A0A3M6V7I4_9STRA (TFCD_C domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7I4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.120e-28
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +F ++Y LC+VRG K VV+L+PHE +D EP +  LQ+QD  DYS WETRY LLLWLSML LVPFD++TIDS
Sbjct:  101 QVYRNPKLHKLFQILYHLCKVRGYKTVVKLLPHEVSDFEPTLQLLQSQDRADYSMWETRYVLLLWLSMLCLVPFDLNTIDS 181
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BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Match: A0A5D6XM80_9STRA (TFCD_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM80_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.120e-28
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    1 QVFICPQLHSMFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRYGLLLWLSMLSLVPFDIDTIDS 243
            QV+  P+LH +  ++Y LC+VRG K VV+L+PHEA+D EP +  LQ+QD  D+STWETRY LLLWLSML LVPFD++TIDS
Sbjct:  117 QVYRNPRLHKLLQLVYHLCKVRGYKTVVKLLPHEASDFEPTLRLLQSQDRSDHSTWETRYVLLLWLSMLCLVPFDLNTIDS 197
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70651.18140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX3_ECTSI8.560e-5098.84Tubulin folding cofactor D n=1 Tax=Ectocarpus sili... [more]
A0A6H5KH41_9PHAE4.880e-4194.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0NUW3_PHYIT1.470e-2965.43Tubulin-specific chaperone D, putative n=2 Tax=Phy... [more]
W2PE43_PHYPN3.290e-2861.73TFCD_C domain-containing protein n=20 Tax=Phytopht... [more]
A0A662Y9P7_9STRA4.490e-2862.96TFCD_C domain-containing protein n=2 Tax=Nothophyt... [more]
G4Z932_PHYSP5.190e-2859.30Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
M4BSB0_HYAAE6.110e-2861.73TFCD_C domain-containing protein n=1 Tax=Hyalopero... [more]
A0A484DYP7_BRELC6.120e-2862.96TFCD_C domain-containing protein n=1 Tax=Bremia la... [more]
A0A3M6V7I4_9STRA6.120e-2862.96TFCD_C domain-containing protein n=2 Tax=Peronospo... [more]
A0A5D6XM80_9STRA6.120e-2862.96TFCD_C domain-containing protein n=1 Tax=Pythium b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70651contigEcto-sp13_S_contig70651:17..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score153.7
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D8LNX3
Model size258
KEGG koko:K21767
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsCOG2116@1,KOG1943@2759
Cds size228
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.237012-UTR-Ecto-sp13_S_contig70651:16..461681463969.237012-UTR-Ecto-sp13_S_contig70651:16..46Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70651 17..46 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.2517579-CDS-Ecto-sp13_S_contig70651:46..1601681463969.2517579-CDS-Ecto-sp13_S_contig70651:46..160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70651 47..160 +
1681463969.2723665-CDS-Ecto-sp13_S_contig70651:548..6621681463969.2723665-CDS-Ecto-sp13_S_contig70651:548..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70651 549..662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70651.18140.1prot_Ecto-sp13_S_contig70651.18140.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70651 47..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70651.18140.1

>prot_Ecto-sp13_S_contig70651.18140.1 ID=prot_Ecto-sp13_S_contig70651.18140.1|Name=mRNA_Ecto-sp13_S_contig70651.18140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MFCVIYQLCRVRGAKAVVRLMPHEAADLEPVIHALQAQDTDDYSTWETRY
GLLLWLSMLSLVPFDIDTIDSCLRDS
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mRNA from alignment at Ecto-sp13_S_contig70651:17..662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70651.18140.1 ID=mRNA_Ecto-sp13_S_contig70651.18140.1|Name=mRNA_Ecto-sp13_S_contig70651.18140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=646bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70651:17..662+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTTCATTTGCCCCCAGCTCCACTCGATGTTCTGCGTGATCTACCA
GCTATGCCGGGTGAGGGGGGCAAAGGCGGTGGTGCGCCTGATGCCTCACG
AAGCGGCCGACCTGGAGCCGGTTATTCACGCCTTGCAGGCCCAGGTGAAA
CCCATTATTGAGTGTTGCTTAATTGCAGCGGCAGCAGTCTTTTATACTTG
CCTTTGATCAATAGCAGCGAACGAAAACATCACAAGAAGAGCAATTTTGA
TTCAACACTGCTCGTCTATATGACAACACTTTGATCAAACCTCAAACAGC
TATAGCATGCAGGCGGTCAGCAGTACTTACCAATTGGTCGAAACCGACCT
CACATCAATTGGCGCTGTTTGGGTGACGGCTAGGGCTCAACCAGGGAAAT
ACAAGAGCGTACAAGGCCCAGTGCCTTGCTGTATCAGCCATTTCTTCCTC
AAAAAAAGTCGCAAGGTCGCGTCCAGGCGCTACACGGCCCTGCAGCTGGC
TGTATCTCATATTCACCCCAACAAACCCTCAGGACACCGACGACTACTCC
ACGTGGGAGACGCGCTACGGGCTGTTGCTGTGGCTCTCCATGCTCTCCCT
CGTGCCCTTCGACATCGACACCATCGACTCTTGCCTGCGGGATTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70651:17..662+

>mRNA_Ecto-sp13_S_contig70651.18140.1 ID=mRNA_Ecto-sp13_S_contig70651.18140.1|Name=mRNA_Ecto-sp13_S_contig70651.18140.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70651:17..662+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTGCGTGATCTACCAGCTATGCCGGGTGAGGGGGGCAAAGGCGGT
GGTGCGCCTGATGCCTCACGAAGCGGCCGACCTGGAGCCGGTTATTCACG
CCTTGCAGGCCCAGGACACCGACGACTACTCCACGTGGGAGACGCGCTAC
GGGCTGTTGCTGTGGCTCTCCATGCTCTCCCTCGTGCCCTTCGACATCGA
CACCATCGACTCTTGCCTGCGGGATTCG
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