mRNA_Ecto-sp13_S_contig7065.18138.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7065.18138.1
Unique NamemRNA_Ecto-sp13_S_contig7065.18138.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A835Z8S7_9STRA (Integral membrane protein DUF92-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S7_9STRA)

HSP 1 Score: 232 bits (591), Expect = 1.150e-72
Identity = 123/182 (67.58%), Postives = 144/182 (79.12%), Query Frame = 1 
Query:  304 ALLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVTAK 849
            AL +N+VGFGL   +GK   +LT  G   AYVLG +LW  LG  GW T VLYL+AGSAVTK+KM +K + GIAEGRGG RGPENVWGSAATGA CA+A +VWPQ +  LR+GY ASLATKL DTFASEIGKAYG+ T+LITT +PVPAGTEGAVSLEGT AGV GS+II+ +AAA G++ A 
Sbjct:    3 ALTINSVGFGLFIGSGKAEKLLTPQGAAHAYVLGNILWYALGWRGWTTCVLYLLAGSAVTKVKMAEKTARGIAEGRGGRRGPENVWGSAATGAACALACVVWPQRAALLRVGYAASLATKLGDTFASEIGKAYGRTTYLITTLRPVPAGTEGAVSLEGTAAGVGGSLIIAWYAAAIGLMPAS 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A7S2GNY6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNY6_9STRA)

HSP 1 Score: 224 bits (571), Expect = 5.630e-69
Identity = 122/203 (60.10%), Postives = 155/203 (76.35%), Query Frame = 1 
Query:  238 KGILAHAVSLPLVQALPPQAQTALLVNTVGFGLL-EATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVT 843
            K + + A++LP+   L  +   A+ +NT G  ++  ATG++  +LT +G   A+ LG++LWS LG  GW   V YL+ GS VTK+K+E+K  LGIAEGRGG+RGPENVWGSAATGA+CA A L WPQ+   L++GYV+S+ATKLSDTFASEIGKAYGK  FLITT KPVP GTEGAVSLEGTLAGVVGS+II+ + AA G+V+
Sbjct:   31 KLVPSRALNLPVADLLLSEPGKAVALNT-GLAIMGSATGQK--MLTPSGLLHAWALGIILWSALGWQGWSLCVFYLVMGSVVTKVKIEEKSKLGIAEGRGGSRGPENVWGSAATGALCAAAMLKWPQYRSLLQVGYVSSIATKLSDTFASEIGKAYGKRCFLITTLKPVPRGTEGAVSLEGTLAGVVGSLIIAIYGAAVGLVS 230
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: L1JQB2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQB2_GUITC)

HSP 1 Score: 214 bits (546), Expect = 9.040e-66
Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = 1 
Query:  304 ALLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVTAK 849
            +L++N+V   LL ATGK  S LTS+G  SA++LG++LW +LG  GW T V+YL+AGS VTK+KM +KE  GIAE RGGARGPENVWGSAAT A CA+ +    Q +G  RIG+VASLATKLSDTFASE+GKAYGK TFLIT+ KPVPAGTEGAVS+EGTLAGVVGS++I+ +A    V+ A 
Sbjct:   11 SLVLNSVLALLLLATGKYRSFLTSSGLLSAWLLGVILWGSLGFAGWSTCVVYLIAGSLVTKVKMAEKEKKGIAESRGGARGPENVWGSAATAAFCAMMATYSLQDTGLFRIGFVASLATKLSDTFASELGKAYGKKTFLITSMKPVPAGTEGAVSVEGTLAGVVGSLVIAVWAVMTNVMLAS 192
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A7S2RSZ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSZ3_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.770e-64
Identity = 115/202 (56.93%), Postives = 150/202 (74.26%), Query Frame = 1 
Query:  220 GGGQERKGILAHAVSLPLVQALPPQAQTALLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAA 825
            GG  +    L    + PLV  L P   TA+ +N+   GL  AT  R S+LT +G   A+ LG++LWS+LG  GW   VLYL+AGS VTK++M++K+ LGI+EGRGG RGPENVWGSAATGA+CA+A+L WP+    L++ YV+S+ATKL+DTF SE+GKA+GK  FLITT KPVP GTEGA+S+EGTLAGVVGS++I+ + A
Sbjct:   55 GGWSKPPAPLVIRPAAPLVPVLGP-VPTAVGLNSALAGLGVAT--RQSMLTPSGLLHAWALGVILWSSLGWQGWSLCVLYLLAGSKVTKIRMKEKQDLGISEGRGGRRGPENVWGSAATGALCAIAALRWPEARPLLQVAYVSSIATKLADTFQSEVGKAFGKRCFLITTLKPVPRGTEGAISVEGTLAGVVGSLLIAAYGA 253
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A7S4FD08_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FD08_CHRCT)

HSP 1 Score: 210 bits (534), Expect = 1.040e-62
Identity = 115/189 (60.85%), Postives = 141/189 (74.60%), Query Frame = 1 
Query:  280 ALPPQAQTA----LLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAG 834
            A PP   TA    +++N+    +  A G+R  +LT +G  SA+VLG+ LWSTLG  GW T V YL+ GSAVTKLKM +KE+ GIAE RGGARGPENVWGSAAT A+CA+ ++  P  + PL +GY ASLATKL+DT ASE+GKAYGK T+LITT KPVP GTEGAVSLEG  AGVVGS++++ FA A G
Sbjct:   99 AAPPSIATAAVQAIVLNSGLAAIGTALGQR--VLTPSGLVSAWVLGVTLWSTLGWQGWATCVFYLVCGSAVTKLKMAEKEAKGIAESRGGARGPENVWGSAATAALCAIGTVYMPLATTPLLVGYTASLATKLADTSASEVGKAYGKSTYLITTLKPVPPGTEGAVSLEGLAAGVVGSIVLAAFAIAIG 285
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A7S3ALU7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ALU7_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 9.120e-62
Identity = 111/184 (60.33%), Postives = 141/184 (76.63%), Query Frame = 1 
Query:  283 LPPQAQTALLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAG 834
            L P+  TA+ +N+    +  A G++  +LT +G   A+ LG++LW +LG  GW T VLYL+ GS VTK++M +KE+LGIAEGRGG RGPENVWGSAAT A CA+AS  WP  +   RIG+VASLATKLSDT ASEIGKA+G+ T+LITTFK VPAGTEGAVSLEGT+AGVVGS++++ + A  G
Sbjct:   31 LSPRVLTAVGLNSGLAAVGVAKGQK--VLTPSGLAHAWALGVMLWGSLGVVGWSTCVLYLVCGSRVTKVRMVEKEALGIAEGRGGMRGPENVWGSAATAAACALASAAWPSRAAVFRIGFVASLATKLSDTCASEIGKAFGQTTYLITTFKLVPAGTEGAVSLEGTVAGVVGSIVLTAYGALVG 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A7S0QBY2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBY2_9EUKA)

HSP 1 Score: 203 bits (517), Expect = 6.950e-61
Identity = 117/222 (52.70%), Postives = 150/222 (67.57%), Query Frame = 1 
Query:  178 RRALIAKVHRVARGGGGQERKGILAHAVSLPLVQALPPQAQTALLVNTVGFGLLEA-TGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVV 840
            R A +A VH       G  R  +L    +     A+ P A T  L    G  ++    G+R  +LT +G   ++ LG++LW+ LG  GW T VLYL+ GSAVTKL+  KKE+LGIAEGRGGARGPENVWGSAAT A+CA+ SL  P  +   R+G+VASLATKL+DT ASE+GKAYGK T+LITT + VP GTEGAVSLEGTLAG+ GS++++G+    G+V
Sbjct:   15 RAAALACVH------SGAARPRLLDLRTTTSSRMAIAPAAATQALALNSGLAVMGTLAGQR--MLTPSGLAHSWGLGVILWTALGVRGWSTCVLYLVCGSAVTKLRKAKKEALGIAEGRGGARGPENVWGSAATAALCAIGSLYAPSLAAIFRMGFVASLATKLADTCASEVGKAYGKTTYLITTLRKVPPGTEGAVSLEGTLAGIAGSIVLAGYGIGVGLV 228
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: D7G5U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U0_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.200e-60
Identity = 111/129 (86.05%), Postives = 112/129 (86.82%), Query Frame = 1 
Query:  463 MAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVTAK 849
            MAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAAT               GPLRIGYVASLATKLSDTFASE+GKAYGKHTFLITTFKPVP GTEGAVSLEGTLAGVVGSVIISGFAA AGVVTAK
Sbjct:    1 MAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAAT---------------GPLRIGYVASLATKLSDTFASEVGKAYGKHTFLITTFKPVPPGTEGAVSLEGTLAGVVGSVIISGFAATAGVVTAK 114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: W7U4P9_9STRA (Integral membrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4P9_9STRA)

HSP 1 Score: 203 bits (516), Expect = 6.790e-60
Identity = 117/192 (60.94%), Postives = 134/192 (69.79%), Query Frame = 1 
Query:  262 SLPL---VQALPPQAQTALLVNTVGFGLLEATGKRGSI-----LTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIIS 813
            S+P+   V AL P+          GFGL  A    G       LTS+G   A++LG+ LWSTLG  GW   VLYL+ GS VTK+K  +KE+LGIAE RGGARGPENVWGSAA G +CA A++  P     L  GYVASLATKLSDTFASEIGKAYGK TFLIT  KPVP GTEGA+SLEGTLAGVVGS+II+
Sbjct:   90 SMPMSRWVVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIA 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Match: A0A845X1W2_9CYAN (TIGR00297 family protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X1W2_9CYAN)

HSP 1 Score: 189 bits (479), Expect = 1.090e-55
Identity = 101/180 (56.11%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:  304 ALLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTAVLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVASLVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVT 843
            ALL+NTV   +     K+  +LT  G   A+VLG+++W TL   G+   + Y + GS+VTK+ M +KE+ GIAEGRGG RGPENVWGSA  G +CA+A+L+WP  +    +GYVAS +TKLSDT ASE+GKAYG+ TFLITT +PVP GTEGAVSLEGTLAG   S II+  A A G++T
Sbjct:   12 ALLLNTVLVAIAFLLPKK--LLTPMGYLHAWVLGVLVWGTLQWQGYSVVMFYFLVGSSVTKIGMAQKEAAGIAEGRGGLRGPENVWGSALVGTLCAIATLIWPNLTPLFALGYVASFSTKLSDTTASEVGKAYGQRTFLITTLQPVPRGTEGAVSLEGTLAGAAASAIIAALAWAIGMIT 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7065.18138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8S7_9STRA1.150e-7267.58Integral membrane protein DUF92-domain-containing ... [more]
A0A7S2GNY6_9STRA5.630e-6960.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
L1JQB2_GUITC9.040e-6664.84Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2RSZ3_9STRA6.770e-6456.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4FD08_CHRCT1.040e-6260.85Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3ALU7_9EUKA9.120e-6260.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0QBY2_9EUKA6.950e-6152.70Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
D7G5U0_ECTSI1.200e-6086.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7U4P9_9STRA6.790e-6060.94Integral membrane protein n=1 Tax=Nannochloropsis ... [more]
A0A845X1W2_9CYAN1.090e-5556.11TIGR00297 family protein n=1 Tax=Spirulina sp. SIO... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7065contigEcto-sp13_S_contig7065:352..5657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score216.5
Seed ortholog evalue1.6e-53
Seed eggNOG ortholog55529.EKX50469
Model size849
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0016020
Exons5
EggNOG free text desc.Integral membrane protein DUF92
EggNOG OGs2QU2J@2759,COG1836@1
Ec32 ortholog descriptionProtein of unknown function DUF92, TMEM19
Ec32 orthologEc-12_009110.1
Cds size849
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.1558814-CDS-Ecto-sp13_S_contig7065:351..5041681463969.1558814-CDS-Ecto-sp13_S_contig7065:351..504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 352..504 -
1681463969.1756308-CDS-Ecto-sp13_S_contig7065:1272..13911681463969.1756308-CDS-Ecto-sp13_S_contig7065:1272..1391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 1273..1391 -
1681463969.186249-CDS-Ecto-sp13_S_contig7065:2159..22291681463969.186249-CDS-Ecto-sp13_S_contig7065:2159..2229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 2160..2229 -
1681463969.1969824-CDS-Ecto-sp13_S_contig7065:3393..36061681463969.1969824-CDS-Ecto-sp13_S_contig7065:3393..3606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 3394..3606 -
1681463969.207007-CDS-Ecto-sp13_S_contig7065:5363..56571681463969.207007-CDS-Ecto-sp13_S_contig7065:5363..5657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 5364..5657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7065.18138.1prot_Ecto-sp13_S_contig7065.18138.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7065 352..5657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7065.18138.1

>prot_Ecto-sp13_S_contig7065.18138.1 ID=prot_Ecto-sp13_S_contig7065.18138.1|Name=mRNA_Ecto-sp13_S_contig7065.18138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=283bp
MRVIVGAFALLICPARCLLRVAVPPAPAMASHPAPAARAVDAIPGGPIFT
SGGHRRSSRRRALIAKVHRVARGGGGQERKGILAHAVSLPLVQALPPQAQ
TALLVNTVGFGLLEATGKRGSILTSAGTFSAYVLGLVLWSTLGGWGWGTA
VLYLMAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAATGAMCAVAS
LVWPQWSGPLRIGYVASLATKLSDTFASEIGKAYGKHTFLITTFKPVPAG
TEGAVSLEGTLAGVVGSVIISGFAAAAGVVTAK
back to top

mRNA from alignment at Ecto-sp13_S_contig7065:352..5657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7065.18138.1 ID=mRNA_Ecto-sp13_S_contig7065.18138.1|Name=mRNA_Ecto-sp13_S_contig7065.18138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7065:352..5657- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGTCATCGTGGGCGCGTTCGCGCTTCTGATTTGTCCGGCTAGATG
TCTGCTGCGTGTGGCCGTGCCACCCGCCCCGGCTATGGCATCACACCCTG
CGCCAGCAGCTCGGGCTGTGGACGCAATCCCCGGTGGGCCGATATTCACG
TCGGGAGGGCACCGCCGTAGCAGCAGGAGGAGGGCGCTCATAGCCAAGGT
CCACCGCGTAGCGAGGGGTGGAGGGGGACAGGAACGGAAGGGGATCCTGG
CGCATGCTGTATCCCTGCCTCTCGTGCAGGCCCTTCCTCCGCAAGTATGT
GCCTGTGTTGTCGAAGTAGGTGTGTCGGGGATGTTTCTGTTTGCATTCGC
CAGTCGAATTCAACATTTCAACCGCAAGTTGATGTGCATCATCTCTCATC
TGTCGATCGTCGAAACACGAAGGGCAGAAATAGATTCTGCATCAAGCTGG
AGTAGAACTGCCGTGCTTTGATCAGTTTGCAGAGTCCAGCAAATACCTTT
CGGGATCCCGCGTCGCATTGGTCGTGCTGGTGTTGTTTGATGTCGGGATA
GAAAAACGTCCGTTGATCTGGTTGTACAATTCCTAAGAAATTATTTGAAA
AACAACGCCTTCCTTCAACACATTTGCAGCAGGAATAACATACACAGAGA
TGCAAGACGGCTGCCACGCTGTCTTGTTGACCCTGTCTCCCACAGGGGAG
GTATCGCTGTGTGATGATCGGGAAGTTATGGAAATACAGGTAGCTTCCGC
TGACGCTATGCAATCATTGCTAATCTACCCTAGACTCTTCTTTATAGATA
AGAGATGGAATCAATCGTTGTGTCATATCAGAAAAAAACACACACATGGG
TTAGTCTCTCCCTTGCCTCCCCCTCACGGGGTCCCAGTTAATGACATTTA
GAAGTGTGCTGTGTTTTCAACCGCACTACGACTGACGTCGTTTCATAGGT
CAGTCGGTTAGCGCGGTCGAAGCTAATTATAACAACACACACACAAGTGG
ATCCAAACGCCAGGATCTGCCCTCGAAGATCGAGCTGCAAGAAGGCAAAT
CACTATGCGGGAACTTTCAACCCGTCTACATCTACCCTCCTTACTGCTGC
TTTTTCAATGTACGGTGGCCTTGGCAAAGGCGCAAATATTTGGCATATGA
AGCCTTTTGCAAGGGTAATTCGACGATAAAACAGCTTTGCTTCGCCTAAA
GGCTCCTCATACCAAAAGGATTCGGAGACGGTTTACCTTCGAGCTGGCTC
GTTTTCTATATGTACGAACTCGTGATGCTTTCGAACGCCATAGACTACTT
CTTGATCAGTTTCCACTACGACCAATAGGTTCGATCTCGGTGGTAGTGCA
GAAAGAAACGACTAGGATGGCAATGAGGGGGATTCGTTTGGCAGCGATGA
AGGAGGAGGAGAGGGAACGGGAGGAGGACAAGACAGAGACCAAAACAGCA
GTCGAGGAGGGCATCATGGCGTGGAAGACAGCAAAAGCTTCGAGCCAGAT
TACCTTCCCCACCACAAACGACGCAGGGCGAAATGTCGAGAAGTTGCTGT
GAAATCGACCATGAGAACGATGAAGTTGAAAGCAAGGAGGATAGTGTTGA
AAGCACTCCAAAACCGAACTCGAGTGCAAGGCAGCAGCCTTTGTAGAAGC
GTGCAGTTTTCTTCTGTTGCTACCGTTTCTGTCTTTGATCCGGAGAATAG
ATTAGTCTCCCCCATGCCGACCTCTCACGGGGTCCCATTTAATGATAGAT
AGAAGTGTGTTGTGTTTTCAACCGCACTGAGACTGGCGTCTTTTCACTGG
TCAGCCGGTTAGCGCGGTCGAAGCTAATAATAACAACACACACACACAAC
ACGCGTGGTCTATTGAGTGCAAAAAAAAGTAAAAGTCAAGCTTACATGTA
CCTGCACCGCATTTAGTGACACATAGGCTACTCTCCTCTCTCTCTCTCTA
GATTATTCCTCTCGCACCCCCTGCCTGTGCCCAGCGCCTTTCCTCCAACC
GTGTGTCGTTTACACTGCTGTGTACTTCACCTTTACGTTTCCGCTCGACA
GGCTCAAACAGCTCTCCTCGTAAATACCGTCGGCTTCGGATTACTCGAAG
CCACAGGCAAGCGTGGTTCTATCCTCACCAGCGCCGGCACCTTTAGCGCT
TACGTGCTGGGCCTGGTGTTGTGGAGCACCCTCGGAGGATGGGGGTGGGG
CACCGCAGTGCTGTACCTGATGGCAGGGTCGGCGGTGACAAAGTTGAAGA
TGGAGAAGAAAGAGGTGCGTTCAAGTATGCGTGTGTCTTTTGGTGTTGGG
AGCGACCGAGCTAACCGGTAACCGATGAAAATACTTGAGTCTCTGTGCGC
TTGAAAACAGAAAAAGGCTTCTAAAGGCTACCATGATCTGGGGGGCGCTT
CATCGGGGAGGCTAAGCCATCTCTCCGTGTGAAAGACAGAAACGATAGCA
AATCGTTCGTGTGTGTGTGCGTATTCGTTCCATGTACATACTCTGGCGCC
AGTCCAGATACCTTTCGGTTTGTTTGTTTGACGGATCAGCCGGGGTGACG
CTGCATACTGCTTTAGAACAGATGCTGCTCGTGTGTGTACAGCGATTCAC
CTTTGAGGACGTCCTACGTACCTCTGATATTTCTTTGGTACCATATTTAC
TTTGATGTTACTATGATGTTAATAGGAACAAACACCACCGGTTTGGGACA
GTTTCAAGCTGTTCTGCACCCCTCTGTCTCCGTTCTAACATTCCTCACCC
CGAACCCCGGTTACCCCGTAGATACCCAAAGACTCAGCATTTCCGTTAGC
AAGACCGCGGGATCGCTGCTGTGGAGACTGCCATTTGGAAGGGTTGCATT
CCCTCTTTTCTAAATGGCGGCGTCGAGCTGAGATGTATGTCTGATTTTTG
GTACCACAAGACCCACGGGTTCGAATCATCGGAACCCGCCACCCAGCCAC
CAACACAACGTTATTCTTGCAACCAACAACACGAATCGTGCAGGGCCGGT
GGGAAGGTGGAAGACCAAACCATTTTCCACGTAGGTTTATCGAACTCTTA
AAGGAAGAATGAGTCATGGTGACACAGCGATCATGGCGCGTTGGCGAAGA
AATGAATTGGCTCGCCGCCAGCCGGCCGGGCGGGTTGGGTTGGGTGGGTT
ACCCCTATTTTCTACCAAGTATCATAGTATAGAGAAGCCCTACTTCTTGC
CTAGAAGCCAAAAGGATTATCGAAATAGGGGAGGGAGGCGAGGGATAGAG
TGGAGGTAGGTTACCTTACGAACGTGTCAAATCGCCTCCAACGACGGTCG
TCGTCAACGATACCTATTCCTTCTTTCCTTCTTTTCACCGAAACGCCCTC
TTGTCTTTCGTCGTTCCCGTCGCCTCCATGACACCGTTGGTGTCTTCCAT
CTCGGCTGGCTTCTGTCTCTCATCTCAGTCGCTGGGCATCGCGGAGGGGA
GGGGGGGGGCGCGCGGTCCTGAAAACGTATGGGGGTCTGCCGCCACAGGT
TCGTTTTTGTATTAGTGTGTTAGTGTGCCATCGTATGTATAGAGCGGTGA
AAATGCTGCTAGTACGATAAAGTGCTGTTCTGTATTGCAACGCTCGGAGC
ACGGATGAAAACAAGAATCGATGTACATTGTATCGTATGCGCATAAAAGA
AAGTGAACACTCACGGGTAACCCTGCCTTTTAAGAGTTGATAGTGAAGGC
TGCGTTGTAGTATTTCCACACACTGCTCGCGTAAAACCGAAAGGAGGTTT
CATTTAGTAAAGATTAGTCAAATAAATCATTTAGGCTCAGCTAGCAGTGT
TGAACGGGCCAACTCCCGAGAAATAAACATCGCCGGGTGGTAGGCTCTGC
CTGCTATCTGCTCTCTGCCATGCTTAGCTGTACTAGCACACACTCACCCC
ACATCGTACACCTCACCCCCTCCGCTGACCCCCTCGAAGCGAAACCATTC
ACTACAGTACAGTATAATAGAAGTACATTTTTTCCCTTCCTCTTCGGTAA
CACCCCCCCCCCCCTTGCTTCCTTTGTAGATGTTTCAATCCGGATATTGC
GTCTTCCGTACTCAAAGACTAAAAGGCGCTTGTTTGCCGACTCGTGTTCT
TTTGTTCTTTTTTTCTTGCCGTGCCAACTACTAATAGTGCTCTACAATAT
TTACCTGGAGCCGTGCGTGCTAGCTTGACACAACTTACTGCTGTACCACA
AGTACCAGGAGGCATGTATGATACATTTTTGATTGCTATTGATACAACTA
CTGTGCTTTATACCAGGAGCTATGTGCGCCGTGGCGTCGTTGGTGTGGCC
CCAGTGGTCAGGCCCCCTTCGAATCGGATACGTGGCCTCCCTGGCCACAA
AGCTTTCGGACACCTTCGCCAGCGAGATTGGCAAGGTACGTACAAGTACA
GCAGCAGTACTGCACAGTAATAGTGCTGCACAGTCCAGCAGTAGCGCGGC
AAAAGGGTCGTCGACACAGGGAATATACCTAACGGTGTTGGCAAAGGAGG
ATCCGTTCATAAGCTACACGTCACCGGGAACATCTTCAACGCATGTTGGG
GAATTGTGTGCATGTATCGATGTGTACAGTGTGTGAGTGTCTCTCCCGAC
AAATATGACGGATACTTGAAGAGGTGCGCTCATCATATGTTGAAATAGAA
AAAATGCCTTGAGTCCTTCTTTGCTTTTTTTTGCCGTACGTGGATGCGCC
CGAATGGTTGTTTGATTGCTTTATAGCTGGCTGAGTTGGTGACGCACATG
TGCCCCTTAGCACTAAGTATGGGAGGAAAATGCAACACAAAAAGTCTGGG
GCTGGGCCAGCAGCACCACCTTTTCGTGTTTTCGTGATGCGGAAGGGGCC
GCCACTCAAGACCCTCCTGTTTGTCCGACGTAGCCCGTTTCTCTTTCCTC
CGGGGGCACGCCAACTTAACACCGACTAGATCCCTACTTTTCAAAGTAGG
GCTTTGTGTAGGATTCTTGACGGAGGACGTCTTCCTTGTAGATGAATAGT
CAAGCTCTTAAAACGTGTACCACCCCTTGCTTGTTTTCGTCTGGTTTTGT
AACACCCAGTTAGACACGTAACTTGAGTGGTAACGCGTCCTGTGATAGTG
GTTGTATATATCATCAGCAACAAGTCATTGCGCGTGTTCGTGTTTCGAGC
CAGGCGTACGGCAAGCACACCTTCCTCATCACGACCTTTAAGCCTGTGCC
CGCCGGCACCGAGGGGGCCGTGAGTCTCGAGGGGACTTTAGCAGGAGTGG
TCGGATCCGTCATCATTTCGGGGTTCGCGGCGGCAGCAGGGGTGGTCACA
GCAAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7065:352..5657-

>mRNA_Ecto-sp13_S_contig7065.18138.1 ID=mRNA_Ecto-sp13_S_contig7065.18138.1|Name=mRNA_Ecto-sp13_S_contig7065.18138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7065:352..5657- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGTCATCGTGGGCGCGTTCGCGCTTCTGATTTGTCCGGCTAGATG
TCTGCTGCGTGTGGCCGTGCCACCCGCCCCGGCTATGGCATCACACCCTG
CGCCAGCAGCTCGGGCTGTGGACGCAATCCCCGGTGGGCCGATATTCACG
TCGGGAGGGCACCGCCGTAGCAGCAGGAGGAGGGCGCTCATAGCCAAGGT
CCACCGCGTAGCGAGGGGTGGAGGGGGACAGGAACGGAAGGGGATCCTGG
CGCATGCTGTATCCCTGCCTCTCGTGCAGGCCCTTCCTCCGCAAGCTCAA
ACAGCTCTCCTCGTAAATACCGTCGGCTTCGGATTACTCGAAGCCACAGG
CAAGCGTGGTTCTATCCTCACCAGCGCCGGCACCTTTAGCGCTTACGTGC
TGGGCCTGGTGTTGTGGAGCACCCTCGGAGGATGGGGGTGGGGCACCGCA
GTGCTGTACCTGATGGCAGGGTCGGCGGTGACAAAGTTGAAGATGGAGAA
GAAAGAGTCGCTGGGCATCGCGGAGGGGAGGGGGGGGGCGCGCGGTCCTG
AAAACGTATGGGGGTCTGCCGCCACAGGAGCTATGTGCGCCGTGGCGTCG
TTGGTGTGGCCCCAGTGGTCAGGCCCCCTTCGAATCGGATACGTGGCCTC
CCTGGCCACAAAGCTTTCGGACACCTTCGCCAGCGAGATTGGCAAGGCGT
ACGGCAAGCACACCTTCCTCATCACGACCTTTAAGCCTGTGCCCGCCGGC
ACCGAGGGGGCCGTGAGTCTCGAGGGGACTTTAGCAGGAGTGGTCGGATC
CGTCATCATTTCGGGGTTCGCGGCGGCAGCAGGGGTGGTCACAGCAAAG
back to top