mRNA_Ecto-sp13_S_contig7065.18139.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7065.18139.1
Unique NamemRNA_Ecto-sp13_S_contig7065.18139.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7065.18139.1 vs. uniprot
Match: D7G5T9_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T9_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.910e-11
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:  193 MQFVLGKGTVAASACLALAYACLSARRATAFGLGLRPTP 309
            MQFVLGKGT AASACLALAYACLSARRA AFGLGLRP P
Sbjct:    1 MQFVLGKGTGAASACLALAYACLSARRADAFGLGLRPIP 39
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BLAST of mRNA_Ecto-sp13_S_contig7065.18139.1 vs. uniprot
Match: A0A6H5L0F2_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.010e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:  193 MQFVLGKGTVAASACLALAYACLSARRATAFGLGLRPTP 309
            MQFVL KG VAASACLALAYACLSAR+A AFGLGLRP P
Sbjct:    1 MQFVLDKGKVAASACLALAYACLSARQAYAFGLGLRPIP 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7065.18139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T9_ECTSI1.910e-1192.31ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
A0A6H5L0F2_9PHAE2.010e-1087.18ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7065contigEcto-sp13_S_contig7065:5812..7641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue2e-09
Seed eggNOG ortholog2880.D7G5T9
Model size310
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
Cds size309
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.1020184-CDS-Ecto-sp13_S_contig7065:5811..58551681463969.1020184-CDS-Ecto-sp13_S_contig7065:5811..5855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 5812..5855 +
1681463969.1141143-CDS-Ecto-sp13_S_contig7065:7376..76411681463969.1141143-CDS-Ecto-sp13_S_contig7065:7376..7641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7065 7377..7641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7065.18139.1prot_Ecto-sp13_S_contig7065.18139.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7065 5812..7641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7065.18139.1

>prot_Ecto-sp13_S_contig7065.18139.1 ID=prot_Ecto-sp13_S_contig7065.18139.1|Name=mRNA_Ecto-sp13_S_contig7065.18139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
AGQHAAVRAPSVLRRQIQKEYLRAWHCTALHCRSWPLLHRRDLQQYLKAL
LLCYPTPGGDMRRQMQFVLGKGTVAASACLALAYACLSARRATAFGLGLR
PTP
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mRNA from alignment at Ecto-sp13_S_contig7065:5812..7641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7065.18139.1 ID=mRNA_Ecto-sp13_S_contig7065.18139.1|Name=mRNA_Ecto-sp13_S_contig7065.18139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1830bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7065:5812..7641+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGGCAGCACGCAGCAGTTCGCGCGCCTTCTGTGTTGCGAAGGTGAGC
GGGAAGGTCGTTTGTGTTCAAGGTCGGTACACAGGGGTGTTGGGCACGAG
TGCTGCCGTATTTTCAGAAAACTAGACTTGAATGAGGCTTAATGTGTAGC
AGTAGCGAGACGATGCTTGCGGGGATCATGCTTGCGCATCGTACTTCTTG
TGACCCGCATGTACCACCGCAGACAGCCAGCATGCATTAGCAAGCTAGCG
GTAGGCCACGCAGCAGCAGAGAACAGCTGGTTGATCGAGAATGATGGTGA
AGTGGCACCGCCTGCCATTATTGCTGGCGTGCTCAGCTGCGCACGAATCC
TGAGACAGATTGCGGTTGCCGTTGAACGGCAGTTCCTTAGCGACACATGA
GGGAGATGGGACAACACGTCGTAAACATAAGCGGTGCTGTCTACATGCAT
CCCGTCAACTCGTGTTGCAGCAGCACAGCAACAACACTTTGCATGCGTGT
TTATGCGGGCCGTAGGTCACGAGCCCCTTTCGAAATCCATGGCATCTCTG
TCGTGAAGGTACGTATACACACGAACACACACAGCCCAAACAAAATTGAG
GTTGGTTGATGTTGTGATGTTCATGCCACGGAAGACAAGACACGATGACA
CGATGGTCACCTTTGATGGTCTTACCGGATGGTTTGCTCCGCCGTCCGTG
TGGTCGGTCTTGTTCAACTCGCAAGCACGTCCAATTCGCTGGCTATGTCT
GATGCTCCTGCTGTGTGTACACTTCAGCGTGTACTTGCACGCTAGTCGGC
AGTTGAGTACTGCTGGAAGTACTCGTGGTCGTTTATCGTTTCGTTCCATA
GTGTCCCTCCGAGTCCTGCCGCCTCGCAGTTGACACTTGACGCCTGACCA
AAGCCGGGCAATACACGGAAAAAGCATCCTGAATGTATCCGTTACAAAAT
GATTCGTCTATTGTTTTCGAACCCCGATCCCGTTATGCCTCCGTTACAAT
ACTGTGATCGGACCCACCGCAGTCGCAGTCACGCCTTCGGTCAAATATAG
GTAATAGACTCGTTTCCTCGTTTACAAGTTTACTCGTCGCCCCGGTGGTC
TAGTTGGTGTCCTCGTAACCTTCTAGAGGTCGGTCAGGTCAGGGGTTCGA
ATCTCGGCGTAAGCGAGCTCCTCTTGCAACGTGAGCTTGTTTTCTATCGC
TTCCGCTCCTGCCGTAGTGGATATCGCTAGTTCGTGTGTACACAGAGGGA
AGAGAGAGGTGAACTCTTCTCGCATTATATATCGAAGGCAAAGTACCGCA
GGATGGGAGGGTAGAGAGGGGTCCTCCTGTGTGACCACAGGTTGAAGTAA
AACGACACTAGTTCTGTGAGCGCTGATTTGAAGTGAAGACAAAAAAAAAA
AACTCTACTGCTCTACAGCAGTAGATACGATCCATCTTGTCTGCGAACGT
GAAGGTCCAGCAGACGGTGGCCGGATGCGGTAATCTGCAGCATGTACTAA
CCATCCTTTCAACCTCGCCACCGCCTCCCTGTTGAAAAACAACCAAACCC
GCCGCACTCCGAAAGGCAGATACAAAAGGAATATTTAAGAGCCTGGCATT
GCACTGCATTGCATTGCAGGAGCTGGCCCTTGCTACACAGGCGGGATCTA
CAGCAGTACCTCAAAGCACTACTGCTGTGTTACCCGACGCCGGGAGGGGA
TATGAGGAGACAGATGCAGTTCGTTCTCGGCAAGGGTACGGTGGCGGCGT
CCGCCTGCCTCGCCCTCGCCTACGCATGCCTCTCCGCAAGACGGGCTACT
GCCTTCGGGCTCGGCCTTAGGCCCACCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7065:5812..7641+

>mRNA_Ecto-sp13_S_contig7065.18139.1 ID=mRNA_Ecto-sp13_S_contig7065.18139.1|Name=mRNA_Ecto-sp13_S_contig7065.18139.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7065:5812..7641+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGGCAGCACGCAGCAGTTCGCGCGCCTTCTGTGTTGCGAAGGCAGAT
ACAAAAGGAATATTTAAGAGCCTGGCATTGCACTGCATTGCATTGCAGGA
GCTGGCCCTTGCTACACAGGCGGGATCTACAGCAGTACCTCAAAGCACTA
CTGCTGTGTTACCCGACGCCGGGAGGGGATATGAGGAGACAGATGCAGTT
CGTTCTCGGCAAGGGTACGGTGGCGGCGTCCGCCTGCCTCGCCCTCGCCT
ACGCATGCCTCTCCGCAAGACGGGCTACTGCCTTCGGGCTCGGCCTTAGG
CCCACCCCC
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