prot_Ecto-sp13_S_contig70647.18137.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig70647.18137.1
Unique Nameprot_Ecto-sp13_S_contig70647.18137.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length61
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70647.18137.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.360e-30
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 0 
Query:    1 VHKQRGSDGTVWAVRVFVVFSDPKETVTAIRKMHGRFFAGRQVQAAAYDHGMFTQGLLDS 60
            VHKQRGSDG VWAVRVFVVFSDP ETVTAIRKMHGRFFAGRQVQAAAYDHGMF+QGLLDS
Sbjct:  637 VHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70647.18137.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI1.360e-3095.00RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..59
e-value: 1.2E-9
score: 40.0
IPR040052Splicing factor 45PANTHERPTHR13288SPLICING FACTOR 45 SPF45coord: 12..59
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 14..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70647contigEcto-sp13_S_contig70647:20..202 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70647.18137.1mRNA_Ecto-sp13_S_contig70647.18137.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig70647 20..202 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig70647.18137.1 ID=prot_Ecto-sp13_S_contig70647.18137.1|Name=mRNA_Ecto-sp13_S_contig70647.18137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
VHKQRGSDGTVWAVRVFVVFSDPKETVTAIRKMHGRFFAGRQVQAAAYDH
GMFTQGLLDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR040052RBM17
IPR035979RBD_domain_sf