mRNA_Ecto-sp13_S_contig70647.18137.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70647.18137.1
Unique NamemRNA_Ecto-sp13_S_contig70647.18137.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70647.18137.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.360e-30
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 VHKQRGSDGTVWAVRVFVVFSDPKETVTAIRKMHGRFFAGRQVQAAAYDHGMFTQGLLDS 180
            VHKQRGSDG VWAVRVFVVFSDP ETVTAIRKMHGRFFAGRQVQAAAYDHGMF+QGLLDS
Sbjct:  637 VHKQRGSDGAVWAVRVFVVFSDPNETVTAIRKMHGRFFAGRQVQAAAYDHGMFSQGLLDS 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70647.18137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWX1_ECTSI1.360e-3095.00RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70647contigEcto-sp13_S_contig70647:20..202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score120.9
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D7FWX1
Preferred namePUF60
Model size183
KEGG koko:K11798,ko:K12811,ko:K12838
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons1
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0124@1,KOG0124@2759
EC3.6.4.13
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463969.0686848-CDS-Ecto-sp13_S_contig70647:19..2021681463969.0686848-CDS-Ecto-sp13_S_contig70647:19..202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70647 20..202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70647.18137.1prot_Ecto-sp13_S_contig70647.18137.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70647 20..202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70647.18137.1

>prot_Ecto-sp13_S_contig70647.18137.1 ID=prot_Ecto-sp13_S_contig70647.18137.1|Name=mRNA_Ecto-sp13_S_contig70647.18137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
VHKQRGSDGTVWAVRVFVVFSDPKETVTAIRKMHGRFFAGRQVQAAAYDH
GMFTQGLLDS*
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mRNA from alignment at Ecto-sp13_S_contig70647:20..202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70647.18137.1 ID=mRNA_Ecto-sp13_S_contig70647.18137.1|Name=mRNA_Ecto-sp13_S_contig70647.18137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70647:20..202+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCACAAGCAACGAGGATCCGACGGCACCGTGTGGGCAGTGAGGGTGTT
CGTGGTGTTCTCCGACCCGAAGGAGACAGTGACAGCCATTCGGAAAATGC
ACGGAAGGTTCTTTGCCGGGCGACAGGTGCAAGCGGCAGCGTACGATCAC
GGGATGTTCACCCAGGGCTTGCTGGACAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70647:20..202+

>mRNA_Ecto-sp13_S_contig70647.18137.1 ID=mRNA_Ecto-sp13_S_contig70647.18137.1|Name=mRNA_Ecto-sp13_S_contig70647.18137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70647:20..202+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCACAAGCAACGAGGATCCGACGGCACCGTGTGGGCAGTGAGGGTGTT
CGTGGTGTTCTCCGACCCGAAGGAGACAGTGACAGCCATTCGGAAAATGC
ACGGAAGGTTCTTTGCCGGGCGACAGGTGCAAGCGGCAGCGTACGATCAC
GGGATGTTCACCCAGGGCTTGCTGGACAGTTGA
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