mRNA_Ecto-sp13_S_contig706.18133.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig706.18133.1
Unique NamemRNA_Ecto-sp13_S_contig706.18133.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig706.18133.1 vs. uniprot
Match: A0A6H5L0A5_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A5_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 1.870e-130
Identity = 431/524 (82.25%), Postives = 438/524 (83.59%), Query Frame = 1 
Query:    1 SLSRDALANNKARSRGLSLLPPRHADGGXXXXXXXXXXXXH-SPLFSNQHQXXXXXXXXXXXXXXXXXDRRSSRSSRPAXXXXXXXXXXGSSGSGRMCHASSSRGAGGGPSTGGAAVPSYAGQGPSSRGGAPGFAWAGAGGRPVSSSGGPGAEYDRRSGGVDGGSGMRATKAGGHRGLDDGRFPSSSSQAYSRQGPAIGDDRGSALGRQRGXXXXXXXXXXXXXXXXXXXXXX---VTDKDHALALFGLSALCQVASATEARPTHDKELIGQMDEEGXXXXXXXXXXXXXXXDGVDRQQQKRHRGAGPEAEARSLRGWAVQESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSGSGGVFCPTWDWGRAACEPAIRLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXXXRDEGESRQEFAQESDDEGPEARPDTSSAAHRRGEAMAITNEA 1560
            SLSRD LANNKARS GLS LPPRHADGG       XXXXX  SP FSNQHQ     XXXXXXXXXXXX           XXX       GSSGSGRM HASSSRGAGGGPSTGGAAVP           GAPGFAWAGAGGRPVSSS GPGAEYDRRSGGVDGGSGMRATKAG HRG DDGR  SSSSQAYSRQGPAIGDDRGSALGRQRG  XXXXXXXXXXXXXXXXXXXX   VT+KDHALALFGLSALCQVASATEA   H K  IGQ+DE+GXXXXXXXX       DGVDR+QQKRHRG GPEAEARS RGWAVQES G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     TSGSGGVFCPTWDWGRAACEPA+RLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXXXRDEGESRQEFAQESDDEGPEARPDTSS AHRRGEA+   +EA
Sbjct:  171 SLSRDPLANNKARSHGLSFLPPRHADGGAGGAFRPXXXXXXXSPSFSNQHQEHHQHXXXXXXXXXXXXXXXXXXXXXXXXXXRPAHRKNGSSGSGRMYHASSSRGAGGGPSTGGAAVPXXXXXXXXXXXGAPGFAWAGAGGRPVSSSXGPGAEYDRRSGGVDGGSGMRATKAGEHRGFDDGRSSSSSSQAYSRQGPAIGDDRGSALGRQRGDGXXXXXXXXXXXXXXXXXXXXXXXVTNKDHALALFGLSALCQVASATEAPAAH-KGSIGQVDEDGXXXXXXXXRGSRRLSDGVDRRQQKRHRGVGPEAEARSRRGWAVQESLGDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XTSGSGGVFCPTWDWGRAACEPAMRLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXXXRDEGESRQEFAQESDDEGPEARPDTSSTAHRRGEAIVTPDEA 689
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BLAST of mRNA_Ecto-sp13_S_contig706.18133.1 vs. uniprot
Match: D7FPT6_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT6_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 1.490e-108
Identity = 340/522 (65.13%), Postives = 350/522 (67.05%), Query Frame = 1 
Query:    1 SLSRDALANNKARSRGLSLLPPRHADGGXXXXXXXXXXXXHSPLFSNQHQXXXXXXXXXXXXXXXXXDRRSSRSSRPAXXXXXXXXXXGSSGSGRMCHASSSRGAGGGPSTGGAAVPSYAGQGPSSRGGAPGFAWAGAGGRPVSSSGGPGAEYDRRSGGVDGGSGMRATKAGGHRGLDDGRFPSSSS--QAYSRQGPAIGDDRGSALGRQRGXXXXXXXXXXXXXXXXXXXXXX-VTDKDHALALFGLSALCQVASATEARPTHDKELIGQMDEEGXXXXXXXXXXXXXXXDGVDRQQQKRHRGAGPEAEARSLRGWAVQESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSGSGGVFCPTWDWGRAACEPAIRLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXXXRDEGESRQEFAQESDDEGPEARPDTSSAAHRRGEAMAITNE 1557
            SLSRD L +NKARSRGLS LPPRHADGG            HSP FSNQHQ          XXXXXXX           XXXX      GSSGSGR+ HASSSRGAGGGPST                                    GPG EYDRRSGGVDGG+GMRATKAGGHRG DDGR PSSSS  QAYSRQGPAIGDDRGSA+GRQRGXXXXXXXXXXXXXXXXXXXXXX VTDKDHALALFGLSALCQVASATEA   HD E IGQMDE+G XXXXXXX       D VDRQ QKRHRG GP+A+A S RGWAVQESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                  TSGSGGVFCPTWDWGRAACEPAIRLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXX RD+GESRQEFAQ+SDDEGPEARPDT SAAHRRGEAMAIT+E
Sbjct:  498 SLSRDPLDSNKARSRGLSFLPPRHADGGVSAFRPPHHDYHHSPSFSNQHQEHHQHPPHYPXXXXXXXXXXXXXXXXXXXXXXPAHRKNGSSGSGRVYHASSSRGAGGGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGVEYDRRSGGVDGGNGMRATKAGGHRGFDDGRSPSSSSSSQAYSRQGPAIGDDRGSAVGRQRGXXXXXXXXXXXXXXXXXXXXXXXVTDKDHALALFGLSALCQVASATEAPAAHDNESIGQMDEDGGXXXXXXXRGSRRLSDVVDRQPQKRHRGVGPDADAGSRRGWAVQESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------XTSGSGGVFCPTWDWGRAACEPAIRLPGSFVDRRFEEVDQQVVKXXXXXXXXXXXXXXXXX-RDQGESRQEFAQKSDDEGPEARPDTGSAAHRRGEAMAITDE 953
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig706.18133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A5_9PHAE1.870e-13082.25HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D7FPT6_ECTSI1.490e-10865.13Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig706contigEcto-sp13_S_contig706:20475..22035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score372.9
Seed ortholog evalue2.5e-100
Seed eggNOG ortholog2880.D7FPT6
Model size1561
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5169@1,KOG0627@2759
Ec32 ortholog descriptionHeat Shock transcription factor
Ec32 orthologEc-18_001660.1
Cds size1560
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.6564558-CDS-Ecto-sp13_S_contig706:20475..220351681463968.6564558-CDS-Ecto-sp13_S_contig706:20475..22035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig706 20476..22035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig706.18133.1prot_Ecto-sp13_S_contig706.18133.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig706 20476..22035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig706.18133.1

>prot_Ecto-sp13_S_contig706.18133.1 ID=prot_Ecto-sp13_S_contig706.18133.1|Name=mRNA_Ecto-sp13_S_contig706.18133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=520bp
SLSRDALANNKARSRGLSLLPPRHADGGGGSFRPPHHRYHHSPLFSNQHQ
EHHQHPPHYPHHHSSNGDRRSSRSSRPAHHPHPAHRKNGSSGSGRMCHAS
SSRGAGGGPSTGGAAVPSYAGQGPSSRGGAPGFAWAGAGGRPVSSSGGPG
AEYDRRSGGVDGGSGMRATKAGGHRGLDDGRFPSSSSQAYSRQGPAIGDD
RGSALGRQRGGGGGGNGGPAAAAAGGGAGGGGVTDKDHALALFGLSALCQ
VASATEARPTHDKELIGQMDEEGGGGSGGGGRGSRRSSDGVDRQQQKRHR
GAGPEAEARSLRGWAVQESSGNEEREEEEEEDGVTSAERDDSSISNHRRS
PSNSSCVSSSSSSSSNSLMSSADSSDGGFEHHHHGNTDNGVFVQPPPPTM
TTTDPKAAVPRQQQQQLTSGSGGVFCPTWDWGRAACEPAIRLPGSFVDRR
FEEVDQQVVKDDDDNDDDEVSSRAEEEERDEGESRQEFAQESDDEGPEAR
PDTSSAAHRRGEAMAITNEA
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mRNA from alignment at Ecto-sp13_S_contig706:20475..22035-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig706.18133.1 ID=mRNA_Ecto-sp13_S_contig706.18133.1|Name=mRNA_Ecto-sp13_S_contig706.18133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig706:20475..22035- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCTCTCTCGCGACGCACTCGCCAACAACAAGGCGAGATCCCGCGGCCT
CAGCTTGCTGCCCCCACGCCACGCGGACGGCGGCGGCGGTTCCTTCCGGC
CCCCTCACCATCGCTACCACCACAGCCCTTTGTTCAGCAACCAACACCAA
GAGCACCACCAGCACCCCCCCCACTACCCCCACCACCACAGCAGTAACGG
CGACCGTCGCTCCAGCAGAAGCAGCAGACCGGCGCACCACCCACACCCCG
CTCACCGCAAGAACGGCAGCAGCGGCAGCGGCAGGATGTGCCACGCTTCA
TCGTCCCGGGGCGCCGGCGGCGGACCGTCCACGGGCGGCGCGGCCGTGCC
GTCCTATGCGGGGCAGGGGCCTTCTTCCCGTGGCGGCGCCCCCGGCTTCG
CGTGGGCGGGAGCGGGGGGTCGTCCGGTCTCTTCGAGCGGCGGTCCCGGC
GCGGAGTACGATCGCCGCAGCGGCGGCGTAGACGGCGGGAGCGGCATGCG
CGCGACCAAGGCGGGGGGGCACCGCGGATTGGACGATGGTCGGTTCCCGT
CGTCGTCGTCCCAGGCCTACAGCCGGCAGGGCCCCGCGATAGGCGACGAT
AGGGGCAGCGCACTCGGCCGGCAACGCGGCGGCGGCGGCGGTGGCAACGG
TGGCCCCGCTGCTGCTGCTGCTGGCGGCGGTGCCGGTGGCGGCGGTGTCA
CGGACAAGGACCACGCGTTAGCCCTGTTTGGCCTCTCGGCGCTCTGCCAG
GTGGCCTCGGCGACAGAGGCTCGCCCCACCCACGACAAGGAGTTGATCGG
GCAGATGGACGAGGAAGGCGGTGGCGGTAGCGGCGGCGGTGGCCGCGGCT
CCCGGCGTTCTTCCGACGGCGTAGATCGACAGCAACAAAAGCGCCACCGG
GGGGCAGGCCCGGAGGCGGAGGCGCGTAGCCTGCGAGGGTGGGCGGTGCA
GGAATCATCGGGCAACGAGGAGAGGGAGGAGGAGGAGGAGGAGGACGGTG
TCACGAGTGCCGAGCGCGACGACTCTAGCATTTCGAACCACCGCCGCAGC
CCCAGCAACAGCAGCTGCGTCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CCTGATGAGCAGCGCTGACAGCTCCGACGGCGGTTTTGAACACCACCACC
ACGGTAACACTGACAACGGCGTCTTCGTGCAGCCGCCGCCGCCGACGATG
ACGACGACCGACCCTAAGGCAGCAGTCCCTCGGCAGCAGCAGCAGCAACT
GACTAGCGGCAGCGGAGGCGTGTTCTGCCCGACGTGGGACTGGGGACGCG
CCGCGTGCGAGCCGGCGATCAGGCTGCCGGGCTCCTTCGTAGACCGTCGC
TTCGAGGAGGTGGACCAGCAGGTGGTAAAGGACGACGACGACAATGACGA
CGACGAAGTGTCGAGCAGGGCCGAGGAGGAAGAAAGAGACGAGGGCGAGA
GCAGACAGGAGTTCGCGCAGGAATCGGACGACGAAGGGCCTGAGGCCAGG
CCCGACACTAGCAGTGCAGCACACCGCAGAGGGGAGGCGATGGCGATAAC
GAACGAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig706:20475..22035-

>mRNA_Ecto-sp13_S_contig706.18133.1 ID=mRNA_Ecto-sp13_S_contig706.18133.1|Name=mRNA_Ecto-sp13_S_contig706.18133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig706:20475..22035- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCTCTCTCGCGACGCACTCGCCAACAACAAGGCGAGATCCCGCGGCCT
CAGCTTGCTGCCCCCACGCCACGCGGACGGCGGCGGCGGTTCCTTCCGGC
CCCCTCACCATCGCTACCACCACAGCCCTTTGTTCAGCAACCAACACCAA
GAGCACCACCAGCACCCCCCCCACTACCCCCACCACCACAGCAGTAACGG
CGACCGTCGCTCCAGCAGAAGCAGCAGACCGGCGCACCACCCACACCCCG
CTCACCGCAAGAACGGCAGCAGCGGCAGCGGCAGGATGTGCCACGCTTCA
TCGTCCCGGGGCGCCGGCGGCGGACCGTCCACGGGCGGCGCGGCCGTGCC
GTCCTATGCGGGGCAGGGGCCTTCTTCCCGTGGCGGCGCCCCCGGCTTCG
CGTGGGCGGGAGCGGGGGGTCGTCCGGTCTCTTCGAGCGGCGGTCCCGGC
GCGGAGTACGATCGCCGCAGCGGCGGCGTAGACGGCGGGAGCGGCATGCG
CGCGACCAAGGCGGGGGGGCACCGCGGATTGGACGATGGTCGGTTCCCGT
CGTCGTCGTCCCAGGCCTACAGCCGGCAGGGCCCCGCGATAGGCGACGAT
AGGGGCAGCGCACTCGGCCGGCAACGCGGCGGCGGCGGCGGTGGCAACGG
TGGCCCCGCTGCTGCTGCTGCTGGCGGCGGTGCCGGTGGCGGCGGTGTCA
CGGACAAGGACCACGCGTTAGCCCTGTTTGGCCTCTCGGCGCTCTGCCAG
GTGGCCTCGGCGACAGAGGCTCGCCCCACCCACGACAAGGAGTTGATCGG
GCAGATGGACGAGGAAGGCGGTGGCGGTAGCGGCGGCGGTGGCCGCGGCT
CCCGGCGTTCTTCCGACGGCGTAGATCGACAGCAACAAAAGCGCCACCGG
GGGGCAGGCCCGGAGGCGGAGGCGCGTAGCCTGCGAGGGTGGGCGGTGCA
GGAATCATCGGGCAACGAGGAGAGGGAGGAGGAGGAGGAGGAGGACGGTG
TCACGAGTGCCGAGCGCGACGACTCTAGCATTTCGAACCACCGCCGCAGC
CCCAGCAACAGCAGCTGCGTCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CCTGATGAGCAGCGCTGACAGCTCCGACGGCGGTTTTGAACACCACCACC
ACGGTAACACTGACAACGGCGTCTTCGTGCAGCCGCCGCCGCCGACGATG
ACGACGACCGACCCTAAGGCAGCAGTCCCTCGGCAGCAGCAGCAGCAACT
GACTAGCGGCAGCGGAGGCGTGTTCTGCCCGACGTGGGACTGGGGACGCG
CCGCGTGCGAGCCGGCGATCAGGCTGCCGGGCTCCTTCGTAGACCGTCGC
TTCGAGGAGGTGGACCAGCAGGTGGTAAAGGACGACGACGACAATGACGA
CGACGAAGTGTCGAGCAGGGCCGAGGAGGAAGAAAGAGACGAGGGCGAGA
GCAGACAGGAGTTCGCGCAGGAATCGGACGACGAAGGGCCTGAGGCCAGG
CCCGACACTAGCAGTGCAGCACACCGCAGAGGGGAGGCGATGGCGATAAC
GAACGAGGCA
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