mRNA_Ecto-sp13_S_contig706.18132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig706.18132.1
Unique NamemRNA_Ecto-sp13_S_contig706.18132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig706.18132.1 vs. uniprot
Match: A0A6H5L0A5_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A5_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 2.980e-116
Identity = 198/236 (83.90%), Postives = 204/236 (86.44%), Query Frame = 1 
Query:    1 VSVSLAGSDEPRPTXXXXXPPRXRDAQADMKAEADVGLEGIGAFFSHCCSAASGNDTTKASESVFLATVANSGDGGLREMAVFCAGPAGEAPDAAPDAYLAREVSLFLQSEEAVAEDLRVYAEALDPAAVGVVVE-SLWSSSNPAALTQPLSPDGAKLLRVFCRFAACRLGRALEVASLVAESAEEAVAGGEKAAEQ-----QGLLLQQHGAFARRVAPQLDSCRWKWWRAAVRFS 690
            VSVS  GSDEPRPT     PPR RD +ADMKAEADVGLEGIGAFFSHCCSAASGNDTT+A ES FLATVANSGDGGLREMAVFCAGPAG+APDAAP AYLAREVSLFLQSEEAVAEDLRVYAEALDPAAV +VVE SL SSSNPAA+TQPLSPDG KLLRVFCRFAACRLGRALEVASLVAESAEE                QGLLLQ+HGAFARRVAPQLDSCRWKWWRAAVRFS
Sbjct:  694 VSVSFVGSDEPRPTPTAPVPPRPRDTRADMKAEADVGLEGIGAFFSHCCSAASGNDTTRALESGFLATVANSGDGGLREMAVFCAGPAGKAPDAAPAAYLAREVSLFLQSEEAVAEDLRVYAEALDPAAVDIVVEESLGSSSNPAAVTQPLSPDGGKLLRVFCRFAACRLGRALEVASLVAESAEEXXXXXXXXXXXXXXXXQGLLLQRHGAFARRVAPQLDSCRWKWWRAAVRFS 929
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BLAST of mRNA_Ecto-sp13_S_contig706.18132.1 vs. uniprot
Match: D7FPT6_ECTSI (Heat Shock transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPT6_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 7.460e-107
Identity = 200/237 (84.39%), Postives = 205/237 (86.50%), Query Frame = 1 
Query:    1 VSVSLAGSDEPRPTXXXXXPPRXRDAQADMKAEADVGLEGIGAFFSHCCSAA-SGNDTTKASESVFLATVANSGDGGLREMAVFCAGPAGEAPDAAPDAYLAREVSLFLQSEEAVAEDLRVYAEALDPAAVGVVVE-SLWSSSNPAALTQPLSPDGAKLLRVFCRFAACRLGRALEVASLVAESAEEAVAGGEKAAEQQ-----GLLLQQHGAFARRVAPQLDSCRWKWWRAAVRFS 690
            VSVSLAGSDEPR  XXXXX   X DAQADMKAEADVGL+GIGAFFSHCCSAA SGNDTT+ASESVFLATVANSGDGGLREMAVFCAGPAG+APDAA  AYLAREVSLFLQSEEAVAEDLRVYAEALDPAAV VVVE SL SSSNP  +TQPLSPDGAKLLRVFCRFAACRLGRALEVASLVAESAE                  GLLLQ+HGAFARRVAPQLDSCRWKWWRAAVRFS
Sbjct:  954 VSVSLAGSDEPRXXXXXXXXXXXXDAQADMKAEADVGLDGIGAFFSHCCSAAASGNDTTRASESVFLATVANSGDGGLREMAVFCAGPAGKAPDAASPAYLAREVSLFLQSEEAVAEDLRVYAEALDPAAVDVVVEGSLGSSSNPVPVTQPLSPDGAKLLRVFCRFAACRLGRALEVASLVAESAEXXXXXXXXXXXXXXXXXXGLLLQRHGAFARRVAPQLDSCRWKWWRAAVRFS 1190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig706.18132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A5_9PHAE2.980e-11683.90HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
D7FPT6_ECTSI7.460e-10784.39Heat Shock transcription factor n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig706contigEcto-sp13_S_contig706:19451..20143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score344.0
Seed ortholog evalue5.5e-92
Seed eggNOG ortholog2880.D7FPT6
Model size693
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsCOG5169@1,KOG0627@2759
Cds size693
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.6227233-CDS-Ecto-sp13_S_contig706:19450..201431681463968.6227233-CDS-Ecto-sp13_S_contig706:19450..20143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig706 19451..20143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig706.18132.1prot_Ecto-sp13_S_contig706.18132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig706 19451..20143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig706.18132.1

>prot_Ecto-sp13_S_contig706.18132.1 ID=prot_Ecto-sp13_S_contig706.18132.1|Name=mRNA_Ecto-sp13_S_contig706.18132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
VSVSLAGSDEPRPTPTASVPPRPRDAQADMKAEADVGLEGIGAFFSHCCS
AASGNDTTKASESVFLATVANSGDGGLREMAVFCAGPAGEAPDAAPDAYL
AREVSLFLQSEEAVAEDLRVYAEALDPAAVGVVVESLWSSSNPAALTQPL
SPDGAKLLRVFCRFAACRLGRALEVASLVAESAEEAVAGGEKAAEQQGLL
LQQHGAFARRVAPQLDSCRWKWWRAAVRFS*
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mRNA from alignment at Ecto-sp13_S_contig706:19451..20143-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig706.18132.1 ID=mRNA_Ecto-sp13_S_contig706.18132.1|Name=mRNA_Ecto-sp13_S_contig706.18132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig706:19451..20143- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCGGTGTCCCTCGCGGGGAGCGACGAGCCCCGGCCGACCCCGACCGC
CTCCGTCCCCCCACGGCCGCGAGACGCGCAGGCGGACATGAAAGCGGAAG
CCGACGTCGGCCTCGAGGGCATCGGCGCGTTCTTCTCGCACTGCTGCTCC
GCCGCTTCCGGCAACGACACGACGAAGGCGTCGGAGTCAGTTTTCCTCGC
CACCGTGGCCAACAGCGGGGACGGCGGGCTGCGCGAGATGGCGGTGTTCT
GCGCCGGCCCGGCCGGCGAGGCTCCCGACGCCGCTCCCGACGCGTACCTC
GCCCGGGAGGTGTCCCTCTTTCTCCAGAGCGAGGAAGCCGTCGCGGAGGA
CCTGCGCGTGTACGCGGAGGCCCTCGACCCCGCCGCCGTGGGCGTCGTGG
TGGAGAGCCTGTGGAGCAGCAGCAATCCGGCGGCGTTAACGCAGCCGTTG
TCACCGGACGGCGCGAAACTTCTGCGCGTTTTCTGCCGGTTCGCGGCGTG
CCGGCTCGGACGCGCGCTTGAGGTGGCGTCGCTGGTGGCGGAGTCGGCGG
AAGAAGCCGTCGCTGGCGGCGAGAAGGCCGCAGAGCAGCAGGGGCTACTT
CTGCAGCAGCACGGCGCCTTCGCACGGCGGGTTGCGCCGCAGCTGGACTC
GTGCCGGTGGAAGTGGTGGCGCGCTGCCGTTCGCTTCAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig706:19451..20143-

>mRNA_Ecto-sp13_S_contig706.18132.1 ID=mRNA_Ecto-sp13_S_contig706.18132.1|Name=mRNA_Ecto-sp13_S_contig706.18132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig706:19451..20143- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCGGTGTCCCTCGCGGGGAGCGACGAGCCCCGGCCGACCCCGACCGC
CTCCGTCCCCCCACGGCCGCGAGACGCGCAGGCGGACATGAAAGCGGAAG
CCGACGTCGGCCTCGAGGGCATCGGCGCGTTCTTCTCGCACTGCTGCTCC
GCCGCTTCCGGCAACGACACGACGAAGGCGTCGGAGTCAGTTTTCCTCGC
CACCGTGGCCAACAGCGGGGACGGCGGGCTGCGCGAGATGGCGGTGTTCT
GCGCCGGCCCGGCCGGCGAGGCTCCCGACGCCGCTCCCGACGCGTACCTC
GCCCGGGAGGTGTCCCTCTTTCTCCAGAGCGAGGAAGCCGTCGCGGAGGA
CCTGCGCGTGTACGCGGAGGCCCTCGACCCCGCCGCCGTGGGCGTCGTGG
TGGAGAGCCTGTGGAGCAGCAGCAATCCGGCGGCGTTAACGCAGCCGTTG
TCACCGGACGGCGCGAAACTTCTGCGCGTTTTCTGCCGGTTCGCGGCGTG
CCGGCTCGGACGCGCGCTTGAGGTGGCGTCGCTGGTGGCGGAGTCGGCGG
AAGAAGCCGTCGCTGGCGGCGAGAAGGCCGCAGAGCAGCAGGGGCTACTT
CTGCAGCAGCACGGCGCCTTCGCACGGCGGGTTGCGCCGCAGCTGGACTC
GTGCCGGTGGAAGTGGTGGCGCGCTGCCGTTCGCTTCAGCTGA
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