mRNA_Ecto-sp13_S_contig7059.18129.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7059.18129.1
Unique NamemRNA_Ecto-sp13_S_contig7059.18129.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7059.18129.1 vs. uniprot
Match: D7FRE0_ECTSI (DUF1084 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE0_ECTSI)

HSP 1 Score: 268 bits (685), Expect = 2.190e-78
Identity = 151/171 (88.30%), Postives = 153/171 (89.47%), Query Frame = 3 
Query:  852 PQLRHAVHLTCAQVGRVVMLWTAARVVWGLSTLTAVLEFQRLVGSATSLREQVYSILVVTLFLTTELYPLLAALDDELLLALSGAEDAAPKVGGGGTGGRNPGSGGSAIETARSGDQGRRSRTSRQLITASTTAVSALSGAGENNPMQPLLPRGGRRRDSWLSASSESELG 1364
            P    A  L   +VGRVVMLWTAARVVWGLSTLTAVLEFQRLVGSATSLREQVYSILVVTLFLTTELYPLL ALDDELLLALSGAEDAAPKVGGGGTGGRN G  GSAIETAR  DQGRRSR +RQ ITASTTAVS LSGAGENNPMQPLLPRGGRRRDSWLSASSESELG
Sbjct:  206 PYKSEAAMLRMDRVGRVVMLWTAARVVWGLSTLTAVLEFQRLVGSATSLREQVYSILVVTLFLTTELYPLLGALDDELLLALSGAEDAAPKVGGGGTGGRNTGHRGSAIETARPEDQGRRSRAARQPITASTTAVSTLSGAGENNPMQPLLPRGGRRRDSWLSASSESELG 376
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BLAST of mRNA_Ecto-sp13_S_contig7059.18129.1 vs. uniprot
Match: A0A835Z1P3_9STRA (DUF1084 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.160e-8
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:  885 AQVGRVVMLWTAARVVWGLSTLTAVLEFQRLVGSATSLREQVYSILVVTLFLTTELYPLLAALDDELLLALSGAEDAA 1118
            A  GR +++WTA RV WG   LTA L++  L  S+ + +  +YS+L+V LFL TEL+P  AALDD++L  +  A  AA
Sbjct:  228 ALAGRALLIWTAGRVCWGAFALTAALQYS-LAASSAAEKAAIYSVLIVALFLVTELWPFAAALDDDVLAVVGEAAAAA 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7059.18129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRE0_ECTSI2.190e-7888.30DUF1084 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z1P3_9STRA8.160e-846.15DUF1084 domain-containing protein (Fragment) n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7059contigEcto-sp13_S_contig7059:3617..7490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score270.0
Seed ortholog evalue8e-70
Seed eggNOG ortholog2880.D7FRE0
Model size2604
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs28PC9@1,2QVZM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002580.1
Cds size543
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7059.18129.1prot_Ecto-sp13_S_contig7059.18129.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7059 4854..6666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.2749252-UTR-Ecto-sp13_S_contig7059:3616..48531681463968.2749252-UTR-Ecto-sp13_S_contig7059:3616..4853Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7059 3617..4853 -
1681463968.3226824-UTR-Ecto-sp13_S_contig7059:6666..74901681463968.3226824-UTR-Ecto-sp13_S_contig7059:6666..7490Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7059 6667..7490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.28592-CDS-Ecto-sp13_S_contig7059:4853..49671681463968.28592-CDS-Ecto-sp13_S_contig7059:4853..4967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7059 4854..4967 -
1681463968.2954211-CDS-Ecto-sp13_S_contig7059:5581..56661681463968.2954211-CDS-Ecto-sp13_S_contig7059:5581..5666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7059 5582..5666 -
1681463968.3045886-CDS-Ecto-sp13_S_contig7059:5936..60971681463968.3045886-CDS-Ecto-sp13_S_contig7059:5936..6097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7059 5937..6097 -
1681463968.3136399-CDS-Ecto-sp13_S_contig7059:6483..66661681463968.3136399-CDS-Ecto-sp13_S_contig7059:6483..6666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7059 6484..6666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7059.18129.1

>prot_Ecto-sp13_S_contig7059.18129.1 ID=prot_Ecto-sp13_S_contig7059.18129.1|Name=mRNA_Ecto-sp13_S_contig7059.18129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=181bp
MRLYLVILCPQLRHAVHLTCAQVGRVVMLWTAARVVWGLSTLTAVLEFQR
LVGSATSLREQVYSILVVTLFLTTELYPLLAALDDELLLALSGAEDAAPK
VGGGGTGGRNPGSGGSAIETARSGDQGRRSRTSRQLITASTTAVSALSGA
GENNPMQPLLPRGGRRRDSWLSASSESELG*
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mRNA from alignment at Ecto-sp13_S_contig7059:3617..7490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7059.18129.1 ID=mRNA_Ecto-sp13_S_contig7059.18129.1|Name=mRNA_Ecto-sp13_S_contig7059.18129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7059:3617..7490- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGTAGGCGAACGGCACATGGTTGATCAAGCCGCGGGCACTAGTGTAC
CACACGGCCGAACAGATCACCAGAACAACGAGCCGACCCTACAGTGCGTG
CACCACTCGAAAATAATAATAACAGTGCGTGCACCACACGAAAGTAAAAA
TAATTGCCGTTTTGGCCGTATTTGTAGAAATTCAATGCCGGTCAAGGTCA
AAGAATGCTTGCCTTGATCTGCAGCGAGTTACGTGTCGTGCAAGAAAATT
CAATTGATTGCCATTTTTGCCGTTTCCGTAAGAAAAAAAAAAGATCGGCC
AAGACCACGAAATGCTTGCCTTGATCTGCTGCGAATTGCGTGTCTTGCTC
GCAAATAAAGATTTACTATTTTTGCCGTTCGTGTAAAAAACAATCATGCG
GCAAGAGCTGTGAGCGAAAACACACTACCGGGCCTGCCGTGTGTTGTTTT
TTATTTGCATTCCCGTCACGACTTGACGAAATAAAGACTTGTCGGACTAC
TTGGATAGCGTGTCCCTCCTCTTTCCCTGCTCCTTGCAATCGAAATATGT
AGATATGCAGTAGAGTTTAGGTGGTCACGAGCTTACCGAAAATACGGCAA
GGCAACGAGATTCTATCGATTGGCGCGTGTATTTGGAGCGTTTCGTTTCC
TCGTATTTGTACCTGGTGGAGGTAGGGGCGGTCAGGCTGGTCCGCACTGA
TGACAGATTGAAGAACGTCCCTGTGGCTCCATAGCATACTATACCGTACC
GTACCCTGACGGAAGCACTTCACTCACTTTTTTTTACCATGCCGTGCCAC
ATTACCCTGACCATCCCGTAGCACATGCGTCTATATCTTGTCATCCTTTG
TCCTCAACTCCGCCATGCTGTGCACTTAACTTGCGCGCAGGTCGGGCGCG
TGGTGATGCTGTGGACGGCGGCGAGAGTCGTGTGGGGCCTGTCGACTTTA
ACGGCCGTTTTGGAGTTCCAGCGGCTTGTAGGGAGCGCCACCAGCCTTCG
CGAACAAGTGAGTGGGGGAGAGATGTACAAGGGAGAGAGAAGGTGTGTTT
GTGCAGATGGTTATATCGGAAAGCACAGGGATCGAACGCGGAGTGGTGAG
AGGGGGACGTTCGCACTGGATCATTGGTATTTGTGGCGTGTAGTGTTCCG
AGGTAGATACGGTAGGTGTTTATGAATTGCCACAGAGGGCGATCCGCCTT
TGGTATCGACTGCTGCTGCGCGTAAGCGCGAGCACCCTTAACCCTGCGCC
CCTTGTAACAGGTGCTTGCCCCCGTCAGGTGCCTCACGGCGTCCACGTCT
CGCCTGTGGCTTTTCTCTTTCTTCCACCTCCTCGGTCTCTCCTCCCCCCC
TCCCCCACACACAATCCAATAATTTGTGCGTTTATGTCAATAGGTGTACT
CGATTCTGGTCGTCACCCTGTTCCTGACGACCGAGCTATATCCTCTCCTC
GCCGCCCTGGACGACGAGTTGCTCCTGGCCTTATCCGGAGCGGAGGACGC
GGCACCTAAAGTCGGCGGAGGGGGAACCGGAGGACGGAATCCGGGAAGTG
GCGGGTAAAGAGATTTGACATGCGTGGCAGTGTTTTTTGTCCTCGGAGAG
TGTTTTGGAGCACCCTTTTTAGCTCTTGTCCTTCCCTAGATCCCCCATGC
AGGCCTGTCAAATGCTCCCACGACTACGGCATGCGTTTACATGAGTACAC
CCCCAGCAGCAATCCTGCCGGTTCCCCTGGCCAGTCAGTCAGCTCCTGGT
AGCACAGCCAAGCCTTGTTGGTAATACGTACGCCTGCTTACCTTTACGCC
ATACGTATGTTGCAAAATTCGAAGGTCGGCAATTGAAACGGCAAGGTCAG
GAGACCAAGGACGCCGGAGTCGCACCTCGAGGCAGCTCATCACCGCTAGC
ACCACCGCGGTGAGAAGAGGTGGCGATGACGTGTAGCGGAGTTGTTGTGT
CGTGGGGTGGGATGGTTGCTCAATCGATCGATGGGTTGGCGTTGGAAAGG
GATGGTAAAATTGTCGGGCGTGCCTGGCTCGGCTGTCGGCACGTGCAACG
TGCACAGCACGAGCTCAGAGGATTGTTGACTCGACTCGAAGGTTGCAACG
TTGCGTAGTGGATCTCCTGCCCCGGACGCACTGCTGTTGTTGTCAACGAG
CGGGGTATAGGATGGCCGAGCGGTTGGGGTTTGGCCCCCACCGCCTACCT
ATTTGAGGAGTCAGTAAGGACAGGAGAGGAGGATGACGTCATGCACTTCG
GAACTCTCCACGTCAGGAGCGCAAATACGCTCGTCGCAACAGGAGACTGG
TGTTGACAACAAAGACGACGCCATGCGGAATCCAGTAACAATCGTGGCAG
CGACGCACTGAGCAACCGAATGCTGGCGGGTGGTATCTCATATCAGATAT
GAAGCAGGGGCGAGTACGCGGTCTCTGAAGGAATGCATGCATGCGTGGTT
TTAACGGCCATGTCACGTTGGGGAAAAGCTACATGCGATGACGTCCCCGC
CCACCCCCCCTTGCCCGGTCTAGGTGTCGGCTCTCAGCGGCGCTGGCGAG
AATAACCCCATGCAACCCTTACTGCCTCGCGGTGGGCGCAGAAGGGACAG
CTGGCTTTCGGCGTCATCTGAAAGCGAGCTTGGGTGACCCGCTGGAATTG
AGCGTTGAATGTGCAGGCACCCGTAGATGCGTTGTTCTTGGACGTGGGCG
TGGAGCAAGGCCGGCGGCGCCGAGGGGAGGGGGCTGCTCAAAAGGTTGAT
GCAAAATGTATTTCGTCGGACATTTCTCTAATCGTTTGTGTTTCAGGGCA
AGCACGGGAACGGGTGTTGGTCGCTCGCATCACGGCGGGGGGGAAAATAA
CACAAACACAGAAAGACCTTACCCGTTCGAGATGTAACAACAGTCAAAGG
GGATATGTTGGGAGTCTTTTATCTAACGACGTTCCGACTGGTGGGATATA
CAAAAAGAAAGCTGTTTTCCATGTCAAAGTACACAAGATGACTGATGATG
TCAGCCACAAGGAAGGGGAGATGTCCCTGAGTTCTGCTCAGGGAATTAGA
CGCAGGTATTTCAGTGTCTGCTAACGGAATGACCTTATTGCTAATCGTCT
GGGAAAAGCCTTTTTGGCGGTACGCCTGCAGAGAGCTATGCATACGTATG
AGTTTTGATTTTTCCTGACTCAACGGAAAAAATACCACCTCCAGAAAACA
AATCCGGGCGGCATTTATTCCCATAGCGCATAAGTTTTGATTTTTCCTGA
CTCAACGGAAAAAATACCACCACTCCAAAGTAAAAATCCGGGCGGCATCA
TTTTATTTATTTATTTTCTTAGTGTGACACAACGAATCCATCTCGAAGAA
GAGAGTCCCAAGGACAGATTAGCAGTGAATCCACAGTGTCAGCGAAGGCT
ACATGTGTTTCCATTTTTTCAAATGTTGTGAGAAGTCAAAGTATCATTTT
TTCCTGGAAAAATGGTGACACTTCATGTATTTCCCAAATTTTTGTGTAGA
CTACTGCTGTACCATCCCGGTATCAACATTTTGTTTTTGCCGCCTCGATT
TTCCAGCAATTTTTTCCATCCTTGTTCTTTCTGGTTGGCCTCAACCAGCG
GCTAGATCTATGATCATGAACACCTGCGAATGAATCGGGATTTGATTGTT
GGATAGGGAACGCACCGGGCATCATGACTTCAGGTGTCCAGACGTCCCCA
ACCTACAGGAGTGTTTCAAGCTGCAACACCCGGGAAAAAAAAAATCTTGG
GATCTGGTCTTCGTCTTGTTCAAGATAGTGGCTGCACATCAGACACCTAA
TCCGCGTCCACAAATAAATATGCATATCCACATGCCGGGTCGTGGCGTTG
TAAATTTGCAAATGCATGTGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7059:3617..7490-

>mRNA_Ecto-sp13_S_contig7059.18129.1 ID=mRNA_Ecto-sp13_S_contig7059.18129.1|Name=mRNA_Ecto-sp13_S_contig7059.18129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7059:3617..7490- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCTATATCTTGTCATCCTTTGTCCTCAACTCCGCCATGCTGTGCA
CTTAACTTGCGCGCAGGTCGGGCGCGTGGTGATGCTGTGGACGGCGGCGA
GAGTCGTGTGGGGCCTGTCGACTTTAACGGCCGTTTTGGAGTTCCAGCGG
CTTGTAGGGAGCGCCACCAGCCTTCGCGAACAAGTGTACTCGATTCTGGT
CGTCACCCTGTTCCTGACGACCGAGCTATATCCTCTCCTCGCCGCCCTGG
ACGACGAGTTGCTCCTGGCCTTATCCGGAGCGGAGGACGCGGCACCTAAA
GTCGGCGGAGGGGGAACCGGAGGACGGAATCCGGGAAGTGGCGGGTCGGC
AATTGAAACGGCAAGGTCAGGAGACCAAGGACGCCGGAGTCGCACCTCGA
GGCAGCTCATCACCGCTAGCACCACCGCGGTGTCGGCTCTCAGCGGCGCT
GGCGAGAATAACCCCATGCAACCCTTACTGCCTCGCGGTGGGCGCAGAAG
GGACAGCTGGCTTTCGGCGTCATCTGAAAGCGAGCTTGGGTGA
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