mRNA_Ecto-sp13_S_contig7059.18128.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7059.18128.1
Unique NamemRNA_Ecto-sp13_S_contig7059.18128.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7059.18128.1 vs. uniprot
Match: D7FRD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRD9_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 6.630e-58
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:   52 MSLPWAIQEIHLPAEETKGQQRRSIFNEDPWALRKCHQCHENFIPTPANNDFDFCSGDCRLSCSILRHTKKQERSQQQQGRKKK 303
            MSLPWAIQEIHLPAEETKGQQRRSIFNEDPWALRKCHQCHENFIPTPANNDFDFCSGDCRLSCSILRHTKKQERSQQQQGRKKK
Sbjct:    1 MSLPWAIQEIHLPAEETKGQQRRSIFNEDPWALRKCHQCHENFIPTPANNDFDFCSGDCRLSCSILRHTKKQERSQQQQGRKKK 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7059.18128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRD9_ECTSI6.630e-58100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7059contigEcto-sp13_S_contig7059:471..2347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_002570.1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.2343533-CDS-Ecto-sp13_S_contig7059:470..6021681463968.2343533-CDS-Ecto-sp13_S_contig7059:470..602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7059 471..602 -
1681463968.2438526-CDS-Ecto-sp13_S_contig7059:2173..23471681463968.2438526-CDS-Ecto-sp13_S_contig7059:2173..2347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7059 2174..2347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7059.18128.1prot_Ecto-sp13_S_contig7059.18128.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7059 471..2347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7059.18128.1

>prot_Ecto-sp13_S_contig7059.18128.1 ID=prot_Ecto-sp13_S_contig7059.18128.1|Name=mRNA_Ecto-sp13_S_contig7059.18128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
VAQPPHCPSTQERQTGVMSLPWAIQEIHLPAEETKGQQRRSIFNEDPWAL
RKCHQCHENFIPTPANNDFDFCSGDCRLSCSILRHTKKQERSQQQQGRKK
K*
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mRNA from alignment at Ecto-sp13_S_contig7059:471..2347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7059.18128.1 ID=mRNA_Ecto-sp13_S_contig7059.18128.1|Name=mRNA_Ecto-sp13_S_contig7059.18128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1877bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7059:471..2347- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCTCAACCGCCACACTGCCCAAGCACCCAAGAGCGACAGACAGGTGT
GATGTCTCTCCCTTGGGCGATCCAGGAGATCCACCTCCCAGCTGAGGAGA
CGAAGGGGCAACAGCGGCGCAGCATCTTCAACGAGGACCCGTGGGCGCTG
AGGAAATGCCACCAGTGCCATGAGGTGAGCGGGTGCGGGGTTCGGAGTGT
GCCTGAAAGGTCGTGTTTGCTTGTTATACTTCTTTTTACGAATACATGCG
AACGATCAATATTTTTTGCTGCGAGACAAACCTGGCTTGAGTCATGTCGC
CTTGTTTGATGGTGATCTTGCTGTGTTTCGGGGGGAAGCGCGCCTGCTTT
CTAAACGCGCATTTTGGAGAGCTATGTTAACCCATTTTTGTCGAAGATGC
ATTCCTGTACAAGCCTATCGGCGTAGGAGTTTAAAATGCCATAGTGTTTG
AGCATCTCCGGAGGGAAAGCGCGCATGATGACAAGAGGACAAAAGTTATT
AGTGGCGGTCGTTCCGAAAAGAAGCAAGCCCAGATAAAAGGCAACTGCCC
TGGTTCGTGCGTGGCGATCCCCGCCTCTGTGTCTGGAGCACCACCTCTCA
GTATCGCCCCGTTGGTAGAAGACGGTTTTTAGTTTTCGAGCGGGGGGGGC
AGGGTGAAGACGTGTCTTGTGTGCTCTTTTCGAGGTGTGCGGTCGCGGGG
AGGTGTGTCACTCCAGCATCATCACGTTGATCTTGCTTTCTTGATCTTGG
TGTTTTGCCCGGTCCGATCCGGCGGGAGGTTCGTCATCTTTGTATTTATT
TCGAGAACGAGAAAAAATTATTTGTGGGAGAGCACCAACAGACCACTTTT
TCATGCGAGAGCAGTCTCAGCACCCTCGTGACGCGCATGCGCTCCCTCGT
TCACCGGACGCCACTTGAAACAGCCTCTCCCTCTAGGCGCTGGGTGATGC
GGCGCTGGTTTTAGCCGAGCACAAGTTGACTACCCTCATGTTTTTTAGTA
TTCCTCCCCGGCTCCGCGCGTCGTTCCGCACGGCGTGTTCCGTCTGGCGA
CAGAACCAACAAGTTATCGCGAGCATATCCCAACGATGGTTGAGGTTCCA
CCCGCCCGCCGCCTGTTGTACCGCCATTTTTTCCGACGTCTCGAATTGTG
TGCTGGATCCCTGGACTACAGTACCCCCCCCCCCCCCCCCCGCTCGTAAC
GTGTACCCACTACCTGCGCAGCCAGCATTATCACTGGTAATTTTTTTTTT
TGTGTTTGTTACCTTGTCCACGCGCCCGGCACGTGCACGCATGATGTTTC
CCACGAACCGAAAAGCTGTTTTTTCGCACGCCCGCCCACCCGCCATGTTG
CCCTGTGTTTTTCGCCTGGGCGGATTCTGGCGGTGAACCTTTCAATTCCG
CCCCGACGTATCCATATGATACACATGCATGATACGCATATGCATACTAA
TATGCACGTACGCATACTAATATGCGCGTATGTAGGCGTTGGTTCTTTGG
TGTGTGTTGATTGTTTTATCCCGACCTCAATGACTTTCAACGTCTGCTCT
CTGTGTCGCCGTGATATCTACGTGCGCGTTTGTTTGTGGCTGGATGGGCG
AGTTTTTTTCCGACCCCATCAGCCAAAAAGATTTCGATGGATTCGTTGGG
TCATATGCGTAAAAGAAACAAACACTGACAACCTCTGCTGTCTGTCTCGC
GGCGATATCTATTACGTGCGCGTTTGTTTGCTGCTTGGTGGGCAGAATTT
TATCCCGACTCCCGCGAACAACGACTTCGACTTCTGCTCTGGCGATTGCC
GCTTGAGCTGCTCCATCTTGCGGCACACCAAGAAGCAGGAGCGGAGTCAG
CAACAGCAGGGGCGCAAGAAGAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7059:471..2347-

>mRNA_Ecto-sp13_S_contig7059.18128.1 ID=mRNA_Ecto-sp13_S_contig7059.18128.1|Name=mRNA_Ecto-sp13_S_contig7059.18128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7059:471..2347- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAGCTCAACCGCCACACTGCCCAAGCACCCAAGAGCGACAGACAGGTGT
GATGTCTCTCCCTTGGGCGATCCAGGAGATCCACCTCCCAGCTGAGGAGA
CGAAGGGGCAACAGCGGCGCAGCATCTTCAACGAGGACCCGTGGGCGCTG
AGGAAATGCCACCAGTGCCATGAGAATTTTATCCCGACTCCCGCGAACAA
CGACTTCGACTTCTGCTCTGGCGATTGCCGCTTGAGCTGCTCCATCTTGC
GGCACACCAAGAAGCAGGAGCGGAGTCAGCAACAGCAGGGGCGCAAGAAG
AAGTGA
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