mRNA_Ecto-sp13_S_contig7058.18127.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7058.18127.1
Unique NamemRNA_Ecto-sp13_S_contig7058.18127.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7058.18127.1 vs. uniprot
Match: D8LEX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 9.860e-20
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 MLTATAVMGGCPADMRVRERRIWPSWAFVFGMRVVGGGGGRMVSSFMPP 147
            MLTATAVMGGCP D+R+RER IWPSWAFV GMRVV  GGGRMVSSFM P
Sbjct:    1 MLTATAVMGGCPTDIRMRERWIWPSWAFVLGMRVVVVGGGRMVSSFMSP 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7058.18127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEX8_ECTSI9.860e-2083.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7058contigEcto-sp13_S_contig7058:3172..3641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size470
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005960.1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.1998868-CDS-Ecto-sp13_S_contig7058:3171..33211681463968.1998868-CDS-Ecto-sp13_S_contig7058:3171..3321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7058 3172..3321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.2092745-UTR-Ecto-sp13_S_contig7058:3321..36411681463968.2092745-UTR-Ecto-sp13_S_contig7058:3321..3641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7058 3322..3641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7058.18127.1prot_Ecto-sp13_S_contig7058.18127.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7058 3172..3321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7058.18127.1

>prot_Ecto-sp13_S_contig7058.18127.1 ID=prot_Ecto-sp13_S_contig7058.18127.1|Name=mRNA_Ecto-sp13_S_contig7058.18127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MLTATAVMGGCPADMRVRERRIWPSWAFVFGMRVVGGGGGRMVSSFMPP*
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mRNA from alignment at Ecto-sp13_S_contig7058:3172..3641+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7058.18127.1 ID=mRNA_Ecto-sp13_S_contig7058.18127.1|Name=mRNA_Ecto-sp13_S_contig7058.18127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7058:3172..3641+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGACGGCAACGGCCGTGATGGGTGGGTGTCCTGCCGACATGCGTGT
GAGGGAGCGACGGATCTGGCCAAGTTGGGCGTTTGTTTTTGGGATGAGGG
TGGTGGGGGGGGGGGGGGGTAGAATGGTGTCTTCATTCATGCCTCCGTGA
GGTAATGCTGCTTCCCGCGGCATATAGACATACAAATAGTAAAGCTTTGG
AGCTTTCTTTTTGTTGGCAGGGGACGCATGGCTGCAGGAAGGTGTTTTTG
GTTGTTTGTGATGCCTATCTCGTGTGTCTTCGTCCCTCACGCCTGGCTGG
GCGCCAATAATCCTAGCCAACATTGGACCCCAAATGAAGCCGTGTTGATG
CTCTGGTGATGAAATAGTCCACCATTTGGTAGTTGGTGATCATCTTCGGA
TCTGTTGCTACCCTCACGGTGGAGCCGGCACGATCGCGCACGTTTCACCG
TTCTTTGTTTCTCGGTAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7058:3172..3641+

>mRNA_Ecto-sp13_S_contig7058.18127.1 ID=mRNA_Ecto-sp13_S_contig7058.18127.1|Name=mRNA_Ecto-sp13_S_contig7058.18127.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7058:3172..3641+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGACGGCAACGGCCGTGATGGGTGGGTGTCCTGCCGACATGCGTGT
GAGGGAGCGACGGATCTGGCCAAGTTGGGCGTTTGTTTTTGGGATGAGGG
TGGTGGGGGGGGGGGGGGGTAGAATGGTGTCTTCATTCATGCCTCCGTGA
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