mRNA_Ecto-sp13_S_contig7057.18125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7057.18125.1
Unique NamemRNA_Ecto-sp13_S_contig7057.18125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 1191 bits (3081), Expect = 0.000e+0
Identity = 615/711 (86.50%), Postives = 630/711 (88.61%), Query Frame = 1
Query:    1 EICPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPWGGARLGSQQRTRVTIFDAESNGTVTDHSTTSLLFDRESSEDYDHEEETXTSGYDXXXXXXXXXXXXXVAGTLGNATLVARDALGRLRGFGGDVFEAWVEVRGEKEGEIYGVKGGSGSFDGYNASVGLGSNGIPLTSPAAVEAATPAMVRVEDLGSGNYTVSYQVYSAGEYLLRVALCRPGGLTGRYTSDSFFQNQEFHRVDRQVPAAVAVMNFTWGVGAIVGTATDFAGVRWSGRIRQHVPHRCELGGIVSRPDYSETFEFELGTALGGGDAARLWIDSVVVIDGFERGSGTVGDWEGAEEGLGGGGRGFVNLTAGTLHEIYIEYSERRGDASLYLAWSSPSVSQQIVPPTNLYW 2133
            +ICPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCS AGTCHHSNGTCSCLPHRVGDDCSS+YCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSG RIDDP LPFDEMERELPHALEFGTKDPRYFASAEAF+VVANASS LNETSVACAQGVFGDDSWACEGK VSHR              YEAFEDPSASAGAYAAAAYGTATTNGTVR TVVRTGGGYGTVGVRYRLRHGTTD ADVSPHAFYTTSDELVFD GVVE+SILLGVHEDGE ETEEYFDLFLLEPWGGARLGSQQRTRVTI DAESNGTVT HSTTSLLFDR+SS+   +EEET  SGYD             VAG LGN TLVARDALGRLRGFGGDVFEAWVEVRGE+EGE  GVKGGS S DGYNASVGL SNGIPLTSPAAVEAATPAMVRVEDLGSG+YTVSYQVYSAG+YLLR ALCRPGGLTGRYTSDSFFQNQEF RVDR       VMNFTWG GAIVGTATDFAG RWSGRIR               PDYSETFEFELGTA+GGGDAARLWID  V+IDGFERGSGTVGDWEG EEGLGGGG G+VNLTAGTLHEIY+EYSERRGDASLYLAWSSPSVS+QIVPP NLYW
Sbjct:   44 QICPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSEAGTCHHSNGTCSCLPHRVGDDCSSLYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGMRIDDPALPFDEMERELPHALEFGTKDPRYFASAEAFDVVANASSPLNETSVACAQGVFGDDSWACEGKTVSHR--------------YEAFEDPSASAGAYAAAAYGTATTNGTVRVTVVRTGGGYGTVGVRYRLRHGTTDGADVSPHAFYTTSDELVFDPGVVELSILLGVHEDGEAETEEYFDLFLLEPWGGARLGSQQRTRVTILDAESNGTVTHHSTTSLLFDRDSSDGIIYEEETQCSGYDADDNDDSDVVVV-VAGMLGNVTLVARDALGRLRGFGGDVFEAWVEVRGEEEGETNGVKGGSVSLDGYNASVGLESNGIPLTSPAAVEAATPAMVRVEDLGSGDYTVSYQVYSAGDYLLRAALCRPGGLTGRYTSDSFFQNQEFQRVDR-------VMNFTWGAGAIVGTATDFAGARWSGRIR---------------PDYSETFEFELGTAVGGGDAARLWIDGAVIIDGFERGSGTVGDWEGTEEGLGGGGTGYVNLTAGTLHEIYVEYSERRGDASLYLAWSSPSVSRQIVPPMNLYW 717          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A8K1FKR7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKR7_PYTOL)

HSP 1 Score: 322 bits (826), Expect = 3.130e-91
Identity = 226/594 (38.05%), Postives = 297/594 (50.00%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPWGGARLGSQQRTRVTIFDAESNGTVTDHSTTSLLFDRESSEDYDHEEETXTSGYDXXXXXXXXXXXXX-VAGTLGNATLVARDALGRLRGFGGDVFEAWVEVRGEKEGEIYGVKGGSGSFDGYNASVGLGSNGIPLTSPAAVEAATPAMV-RVEDLGSGNYTVSYQVYSAGEYLLRVALCRPGGLTGRYTSDSFFQNQE-FHRVDRQVPAAVAVMNFTWGVGAIVGTATDFAGVRWSGRIR 1779
            CPGMVGP++D  YYC  +++GYCDRRSG C CN GY G  C +C  +++ +G LCYPK  CP+DCS AG                      +YC   F ++CT CT+  C SC  G+YVD       C  C ++  XXXXXXXXXXXXX D +L SIRRSGAR+ D  LP DE+ RE      +G++DPR F  AEAF+++ +    LNE S  C QG   D +W CE   VSHRVCG+PG  SF SP Y   E                  T  T+  TV R+GGG G+  V Y L+H TT   DVSP AFYT+S  L F  GVVE+S LL +H+D +VE +E F + L  P  G+ LGSQ+   VTI D +    +TD   + ++                TSG                +   LGN         G L+  G D+F     V  E+E ++                    ++ +  T         P M+ +V D  +G YT S+Q   AGEY + V L  P GL G Y +D++        R+DRQ+       NF W  G +   ATD+  VRWSGR++
Sbjct:   81 CPGMVGPINDEEYYCHSRDYGYCDRRSGLCVCNQGYTGVDCTQCKPSYFMKGRLCYPKKSCPNDCSRAGVXXXXXXXXXXXXXXXXXXXXXVYC--AFDTKCTSCTSTQCLSCIEGFYVDPTT--QTCASCKKYXXXXXXXXXXXXXXXADLILNSIRRSGARLVDTALPTDELSREFSFKFSYGSQDPRVFDEAEAFSLLKSPVKYLNENSQRCVQGTRSDATWVCETTTVSHRVCGHPGVFSFTSPIYAVPE------------------TAQTIMLTVRRSGGGMGSATVAYELQHITTSAEDVSPTAFYTSSQLLQFADGVVELSFLLTIHDDHKVEGDETFRVILRSPTDGSSLGSQREAFVTILDDDLP--LTDAKLSYIV---------------PTSGTTLQKGGYAGDPLKFQIQAVLGN---------GALKTTGSDLFLMESYVADEREADL--------------------ADALMSTRYR------PKMLGQVVDNTNGLYTCSWQRSLAGEYTVAVYLLYPNGLQGDYFADAWLSGSPAVSRIDRQI-------NFLWDNGPLFPGATDYVSVRWSGRLK 593          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A5D6XZC4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZC4_9STRA)

HSP 1 Score: 308 bits (788), Expect = 3.910e-86
Identity = 235/656 (35.82%), Postives = 315/656 (48.02%), Query Frame = 1
Query:    1 EICPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSL------NETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPW-------GGAR--LGSQQRTRVTIFDAESNGTVTDHSTTSLLFDRESSEDYDHEEETXTSGYDXXXXXXXXXXXXXVAGTLGNATLVARDALGRLRGFGGDVFEAWVEVRGEKEGEIYGVKGGSGSFDGYNASVGLGSNGIPLTSPAAVEAATPAMVRVEDLGSGNYTVSYQVYSAGEYLLRVALCRPGGLTGRYTSDSFFQNQEF-HRVDRQVPAAVAVMNFTWGVGAIVGTATDFAGVRWSGRIRQHVPHRCELGGIVSRPDYSETFEFELGTALGGGDAARLWIDSVVVID 1920
            + CPGMVGPV+D  +YC G+E GYCDRRSG C CN GY G  C  C  +++++GGLCYPK  CP DCS  G                    S  +C   F + CT CT+  C SC  GYYV+       C  C +   XXXXXXXXXXXXX DPLL S+RRSGAR  D  LPFDE+ RE   A  +G++DPR F  AEAF++     + L      ++ S +C QG+  D + +C    VSHRVCG+ G  SF SP YE  E         AAA+         +  TV R+GGG G+  + Y +++ T    DVSP AFYT+S  LVFD GVVE++  L +H+D  VE +E F + L +P        G  R  LGSQ+   VTI D ++  T    +  S + D ++         T  +G               V   LG+  L                       RGE    +Y V+  +   +  +    + +      S  A+   T  + RV D G G  T +++   AG + + V L  PGGL G Y SD++        R+DR V       NFTWG G+I   A+D+   RWSGR++               P  +E   F     +   D  RLWID V++ID
Sbjct:   78 QSCPGMVGPVNDEEFYCRGREFGYCDRRSGLCVCNQGYTGLDCTACKPSYFKRGGLCYPKKSCPKDCSQGGAXXXXXXXXXXXXXXXXXXXSQAFCQ--FDALCTSCTSTTCLSCVEGYYVEPAT--QTCASCKKXXXXXXXXXXXXXXXXADPLLNSVRRSGARAVDAALPFDELTREFAFAFPYGSQDPRVFDEAEAFDLTPTPVAGLAPTPLLSDVSRSCTQGLNSDATLSCAPMSVSHRVCGHAGVFSFGSPTYEIAE---------AAAS---------ITLTVRRSGGGMGSAALAYDVQYVTASPDDVSPTAFYTSSQWLVFDEGVVELAFQLTIHDDHVVEQDETFRVSLRQPELDGAMARGSKRSSLGSQRHALVTILDDDAAFT---DAGLSFVVDADT---------TLRAG-----GRAGDDITFQVQSVLGSGVLRT--------------------TRGESS--VYLVESYAAGIESDDXXXXVETENEGTVSWEALR--TKQLGRVADNGDGTCTCTWRRREAGSFTVAVYLLHPGGLRGHYYSDAWMAGTPVVSRIDRHV-------NFTWGTGSIFPGASDYVSARWSGRLK---------------PKSTEDVTFY----VAADDHTRLWIDDVLLID 644          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A836CC08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC08_9STRA)

HSP 1 Score: 303 bits (777), Expect = 9.980e-85
Identity = 218/680 (32.06%), Postives = 300/680 (44.12%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHS----------NGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVD--CLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEY----------------FDLFLLEPWGGARLGSQQRTRVTIFDAESNGTVTDHSTTSLLFDRESSEDYDHEEETXTSGYDXXXXXXXXXXXXXVAGTLGNATLVARDALGRLRGFGGDVFEAWVEVRGEKEGEIYGVKGGSGSFDGYNASVGLGSNGIPLTSPAAVEAATPAMVRVE----DLGSGNYTVSYQVYSAGEYLLRVALCRPGGLTGRYTSDSFFQN----QEFHRVD----RQVPAAVAVMNFTWGVGAIVGTATDFAGVRWSGRIRQHVPHRCELGGIVSRPDYSETFEFELGTALGGGDA-ARLWIDSVVVIDG 1923
            CPG++ P D G+ +C  KE G CD RSGTC C+ GY GTSC+ C  THY  GGLCYP+ LCP  CSG G C +            GTC+C   R G DCS + C ++F + C ECTA  CT CE+GYYV+      D  C+ C+R D               D LL S+RR G R  DP LP +E+ REL  A+EFGT DP +F  AE + +  N S +LN T+ ACAQGV  D +W C  K  SH               YE  E    +               GT+R   +RTGGG G +   Y +RH TTD +DV+ H+ +  +  +    GV+E S LL +H+D +VE +E                 F+++LL+P GGARLGSQ+R  V I D ++  T+   ST +                T  +G               VAG     T+ +    G  +  GGD + A +    +                            +P    A  +  +     VE      G   Y  +Y V  AGEY + V L   GGL   Y +  F          HR          + +  +++ W +G +   A DF   RW GR          L G      ++ET+ F   T L   ++   LWID+ ++++G
Sbjct:  626 CPGVLVPGDKGVLFCGAKERGVCDTRSGTCVCSDGYMGTSCELCQITHYMVGGLCYPRHLCPGACSGNGECDYQVRPPDGSPRRTGTCACSATRTGADCSLLLCEALFDALCAECTAAACTRCEAGYYVEQDNSAFDPRCVACSRAD---------GCLACADLLLNSVRRVGQRTVDPPLPPEELTRELGRAMEFGTLDPHFFDDAEVYRLAFNKSVALNATAAACAQGVASDAAWTCAPKATSHV--------------YEVDEKGDGT---------------GTLRLMALRTGGGMGEMSFSYAIRHLTTDGSDVTAHSQWAANAPITMAAGVIEASWLLTIHDDDDVEADEXXXXXXXXXXXVEADEAFEVYLLDPRGGARLGSQRRATVWIRDDDALTTLAPASTAAG---------------TGIAG--------------AVAGYSAAFTVTSMTPAGIPQTGGGDTYVATIAPLEQ----------------------------LPPQDAAPEQQWSAPQETVEVCIVPAGGAEYNATYTVLQAGEYSMDVQLAHTGGLRATYYATVFGAEGALQPPLHRASVIFITHRGSVLGTVDWWWDLGPVAPGAPDFVSARWEGR----------LAGA-----HNETYTF---TVLSDAESYVELWIDATLILEG 1192          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A1W0A1S2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1S2_9STRA)

HSP 1 Score: 264 bits (674), Expect = 2.460e-71
Identity = 149/388 (38.40%), Postives = 207/388 (53.35%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLL--------------CPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXX-TDPLLLSIRRSGARIDDP-ELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVET-EEYFDLFLLEPWGGARLGSQQRTRVTIFD 1119
            CP MVGP+D+G YYC GKE+GYCDRRSG+C+CN GY G  C EC   +++ GG+CYP+                C +DCSG G+C++  G C+C P R+G DCS + C  V  + C  C+   C  C SGYYV  +     C PC   DP               D  L SI+RSG R  DP  +P +E+ RE      + ++    F  AE ++V+    SSLN T  AC QG+ GD SW C     SH +CG+ GTI+F SP Y   ++ +                   +  T+VRTGGGYG   V Y L H T+ +ADVSP A+YTT+  L F   V++++  + +H++  V+     FDL L EP     +G+Q+ + V I++
Sbjct:   76 CPSMVGPLDNGEYYCNGKEYGYCDRRSGSCWCNKGYTGIDCTECIPEYFQAGGICYPRRTSFTISGWLSLHLGNCLNDCSGQGSCNYMTGLCTCNPSRLGSDCSQVSCH-VLDTLCQSCSDGQCLQCFSGYYVTPMNA---CAPCTNFDPRCIECNAVKGCLTCADFQLNSIKRSGPRTIDPWPMPSEEIVREFSLTNVYSSQSSHSFDEAEVYSVLP---SSLNITQ-ACQQGLSGDASWKCVNSPSSHIICGHTGTITFASPSYAIAQNSTF------------------LPITIVRTGGGYGEASVLYELVHRTSTKADVSPTAYYTTTQRLTFPPSVIQLTFYITIHDNPAVKPYNPVFDLVLKEPSANVAIGNQRISTVVIYE 437          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A2D4C3Z3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3Z3_PYTIN)

HSP 1 Score: 263 bits (673), Expect = 3.440e-71
Identity = 161/372 (43.28%), Postives = 209/372 (56.18%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVV-ANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPWGGARLGSQQRTRVTIFD 1119
            CPGM+GP++D  YYC G+E+GYCDRRSG C CN GY G  C EC  +++++G +C PK  CP+DCS AG                    S  +CS  F  +CT CT+  C SC  G+YVD       CL C     XXXXXXXXXXXXX D +L S+RRSGAR+ D  LPFDE+ RE  +   +G++DPR F   EA+ +V     + LN  S +C QG   D SW+C+   VSHRVCG+ G  S+ S                       A TN  +  TV R+GGGYG   V Y L H TT+ +DVSP  FYT+S  L F  GVVE+S  L +H+D  V+ ++ F + L  P   + LGSQ+   ++I D
Sbjct:   65 CPGMIGPINDEEYYCRGREYGYCDRRSGLCVCNQGYTGLDCTECKPSYFKKGSVCLPKKSCPNDCSRAGIXXXXXXXXXXXXXXXXXXXSQRFCS--FDVKCTSCTSTQCLSCIEGFYVDPAT--QTCLSCKAXXXXXXXXXXXXXXXXADLILNSVRRSGARLVDAALPFDELTREFSYKFSYGSQDPRVFDEGEAYQLVPTTVPTPLNAASQSCVQGSRRDASWSCQSTAVSHRVCGHSGVFSWASTR---------------------AATN--ITLTVRRSGGGYGDASVVYDLEHVTTNPSDVSPTMFYTSSQTLSFASGVVELSFSLTIHDDHVVDGDKTFRVRLRTPSDRSALGSQRDALISILD 409          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: T0R1I8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1I8_SAPDV)

HSP 1 Score: 260 bits (665), Expect = 3.650e-70
Identity = 166/370 (44.86%), Postives = 203/370 (54.86%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDP-ELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPWGGARLGSQQRTRVTI 1113
            CPGMVGP  DG YYC G+E+GYCDRRS TC+CN GY G +C  C   ++  GGLCYPK  CP+DCSG GTC ++ G CSC P RVG DC    C+++  + C  C    C  C   Y+V        C+       XXXXXXXXXXXXX D  L S++RSG R  DP  +P +E  RE  +   FG++ P  F   E + + A A   L+ T  AC QG  GD SW C     SH VCG+ GTI+F SP Y   E  +                   V  TVVRTGGG GTV V Y L H TT  +DVSP A+YTTS  L F   V+ ++  + VHE+  V     F L L  P  GA +G Q+ T V I
Sbjct:   87 CPGMVGPFSDGEYYCAGREYGYCDRRSSTCYCNKGYTGRNCTTCIPEYFGVGGLCYPKRSCPNDCSGQGTCDYATGICSCSPSRVGLDCGQPACTAI-DALCVSCAGATCLRCIQSYFVSASTN--RCVSXXXXXXXXXXXXXXXXXXXADFHLNSVKRSGPRTTDPWPMPPEERIREFSYLAVFGSQSPHAFDETEPYTLQATA---LDATQ-ACTQGGNGDASWQCVSAPSSHVVCGHGGTITFASPSYAINESATV------------------VPITVVRTGGGVGTVSVLYELTHMTTTPSDVSPTAYYTTSQRLTFLPSVIRLTFAVTVHEN-PVAKNRSFRLQLRAPSDGATIGDQRTTTVEI 430          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A1V9ZK47_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZK47_9STRA)

HSP 1 Score: 254 bits (649), Expect = 4.360e-68
Identity = 156/373 (41.82%), Postives = 198/373 (53.08%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDP-ELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEV-ETEEYFDLFLLEPWGGARLGSQQRTRVTIFD 1119
            CPGMVGP  DG YYC+GK +G+CDRRS TC+CN GY G +C EC   +Y  GGLCYP+  CP+DCSG G+              VG DCS   C+++  + CT C    C SC  GY+V+       C PC   D XXXXX         D  L S++RSG R  D   LP +E+ RE      +GT+ P  F   EA+ VV      L  T+ AC QG  GD +W C     SH VCG+ GTI+FLSP Y   E+ +                   +  TVVRTGGG G+  V Y L H TT  ADVSP A+YTTS  L+F  GVV ++  + +H++  V  +   F+L L  P  GA +G Q+   V I D
Sbjct:   82 CPGMVGPFSDGEYYCVGKAYGFCDRRSSTCWCNKGYTGVACTECIPEYYPLGGLCYPRKNCPNDCSGQGSXXXXXXXXXXXXXXVGADCSLQSCAAI-DALCTSCAGGSCRSCIPGYFVNASNR---CAPCTLIDXXXXXXDIGVCLVCADFQLNSVKRSGPRSTDLWPLPPEEVGREFSFQAVYGTQSPHVFDETEAYFVVPTP---LGATT-ACTQGTRGDATWTCVAAPSSHAVCGHAGTITFLSPTYAVAENAT------------------WLPVTVVRTGGGAGSASVDYELVHVTTTSADVSPTAYYTTSQRLIFLPGVVRLTFQVTIHDNAVVGASNAVFELRLRAPSEGATVGDQRTAAVVILD 428          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A024TPT6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TPT6_9STRA)

HSP 1 Score: 247 bits (631), Expect = 9.470e-66
Identity = 152/375 (40.53%), Postives = 194/375 (51.73%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGAR--IDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPWGGARLGSQQRTRVTIFDAE 1125
            CPGMVGP  DG YYC+GKE+G+CD+RS TC+CN GY+G +C +C   +Y+ GGLCYPK  CPSDCSG GT                   S   C   F   CT CTA  C +C  GY+         CLPC+ +DP        XXXX  D +L S+RRSGAR  ID    P +E  RE      +G++ P+ F  AE F +V     SL+     C QG   D S+AC     SH +CG+ GT+SF SP YE  E+                     +  TV RTGGG G+V V Y L H TT + DVS  AFYT+S  L F  GV  I+  + +H++      + F + L +P   A LG+Q    +TI D E
Sbjct:   85 CPGMVGPFSDGEYYCVGKEYGFCDQRSSTCWCNKGYEGLNCTQCIPEYYKHGGLCYPKKNCPSDCSGQGTXXXXXXXXXXXXXXXXXXXSQQSCHR-FDMLCTSCTAGACLACLPGYFPITNR----CLPCSTYDPRCITCDDQXXXXCGDFILNSVRRSGARAGIDPSTSPLEEPTREFSFLSVYGSQHPQVFDEAEPFGIVRAIPPSLS-----CTQGTSMDASFACVPLPRSHVICGHSGTLSFSSPTYEIAENAP------------------WIPVTVTRTGGGVGSVAVTYELIHLTTSDQDVSATAFYTSSQRLEFLPGVTSITFFITIHDNFVRNENKEFLVALRDPTSDATLGNQDNAVITILDNE 431          
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Match: A0A067BVM2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVM2_SAPPC)

HSP 1 Score: 246 bits (628), Expect = 2.260e-65
Identity = 162/369 (43.90%), Postives = 195/369 (52.85%), Query Frame = 1
Query:    7 CPGMVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGGLCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCTECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPXXXXXXXXXXXXXTDPLLLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVANASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAFEDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTDEADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEPWGGARLGSQQRTRVTI 1113
            CPGMVGP  DG YYC+G+E+GYCDRRS TC+CN GY G +C  C   ++  GGLCYPK  CP+DCSG GTC ++ G CSC P RVG DC    C+++  + C  CT   C  C   Y+V        C+P      XXXXXXXXXXXXX D  L S++RSG R  DP   +     E P+A  F   +P    S             L  T  AC QG  GD SW C G   SH VCG+ GTI+F SP Y   E  +                   V  TVVRTGGG G V   Y L H TT  +DVSP A+YTTS  L F  GV+ ++  + VH +  V     F L L  P  GA +G Q+ T V I
Sbjct:   91 CPGMVGPFSDGEYYCVGREYGYCDRRSSTCYCNKGYTGRNCTACIPEYFAVGGLCYPKRSCPNDCSGQGTCDYATGICSCSPSRVGLDCGQPACTAI-DALCVSCTGATCLRCIQSYFVSTSTN--RCVPXXXXXXXXXXXXXXXXXXXADFHLNSVKRSGPRATDP---WPMPPEESPYA--FDETEPYTLQSTP-----------LGATQ-ACTQGGNGDASWQCIGAPSSHVVCGHRGTITFASPSYAINESATV------------------VPITVVRTGGGAGAVSFLYELTHVTTTPSDVSPTAYYTTSQRLTFPPGVIRLTFAVTVHAN-PVAKNRSFRLQLRAPSDGATIGDQRTTTVEI 420          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7057.18125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIF9_ECTSI0.000e+086.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1FKR7_PYTOL3.130e-9138.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XZC4_9STRA3.910e-8635.82Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A836CC08_9STRA9.980e-8532.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W0A1S2_9STRA2.460e-7138.40Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4C3Z3_PYTIN3.440e-7143.28Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
T0R1I8_SAPDV3.650e-7044.86Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9ZK47_9STRA4.360e-6841.82Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024TPT6_9STRA9.470e-6640.53Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A067BVM2_SAPPC2.260e-6543.90Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7057contigEcto-sp13_S_contig7057:870..7124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1191.4
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LIF9
Model size2136
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.regulation of membrane repolarization during atrial cardiac muscle cell action potential
EggNOG OGsCOG5069@1,KOG0518@2759
Cds size2121
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7057.18125.1prot_Ecto-sp13_S_contig7057.18125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7057 885..7124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.01177-UTR-Ecto-sp13_S_contig7057:869..8841681463968.01177-UTR-Ecto-sp13_S_contig7057:869..884Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7057 870..884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.0321858-CDS-Ecto-sp13_S_contig7057:884..10521681463968.0321858-CDS-Ecto-sp13_S_contig7057:884..1052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 885..1052 +
1681463968.043128-CDS-Ecto-sp13_S_contig7057:1372..16141681463968.043128-CDS-Ecto-sp13_S_contig7057:1372..1614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 1373..1614 +
1681463968.0542018-CDS-Ecto-sp13_S_contig7057:1906..20871681463968.0542018-CDS-Ecto-sp13_S_contig7057:1906..2087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 1907..2087 +
1681463968.0657265-CDS-Ecto-sp13_S_contig7057:2526..26311681463968.0657265-CDS-Ecto-sp13_S_contig7057:2526..2631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 2527..2631 +
1681463968.0756843-CDS-Ecto-sp13_S_contig7057:3023..32651681463968.0756843-CDS-Ecto-sp13_S_contig7057:3023..3265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 3024..3265 +
1681463968.0845904-CDS-Ecto-sp13_S_contig7057:3701..43051681463968.0845904-CDS-Ecto-sp13_S_contig7057:3701..4305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 3702..4305 +
1681463968.0932667-CDS-Ecto-sp13_S_contig7057:4942..50791681463968.0932667-CDS-Ecto-sp13_S_contig7057:4942..5079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 4943..5079 +
1681463968.1035974-CDS-Ecto-sp13_S_contig7057:5497..55851681463968.1035974-CDS-Ecto-sp13_S_contig7057:5497..5585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 5498..5585 +
1681463968.1133332-CDS-Ecto-sp13_S_contig7057:6323..65861681463968.1133332-CDS-Ecto-sp13_S_contig7057:6323..6586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 6324..6586 +
1681463968.1242096-CDS-Ecto-sp13_S_contig7057:7033..71241681463968.1242096-CDS-Ecto-sp13_S_contig7057:7033..7124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7057 7034..7124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7057.18125.1

>prot_Ecto-sp13_S_contig7057.18125.1 ID=prot_Ecto-sp13_S_contig7057.18125.1|Name=mRNA_Ecto-sp13_S_contig7057.18125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=707bp
MVGPVDDGMYYCLGKEHGYCDRRSGTCFCNVGYQGTSCQECSSTHYEQGG
LCYPKLLCPSDCSGAGTCHHSNGTCSCLPHRVGDDCSSIYCSSVFSSRCT
ECTADGCTSCESGYYVDYLGGGVDCLPCNRHDPRCTECDEESCLECTDPL
LLSIRRSGARIDDPELPFDEMERELPHALEFGTKDPRYFASAEAFNVVAN
ASSSLNETSVACAQGVFGDDSWACEGKIVSHRVCGNPGTISFLSPEYEAF
EDPSASAGAYAAAAYGTATTNGTVRFTVVRTGGGYGTVGVRYRLRHGTTD
EADVSPHAFYTTSDELVFDHGVVEISILLGVHEDGEVETEEYFDLFLLEP
WGGARLGSQQRTRVTIFDAESNGTVTDHSTTSLLFDRESSEDYDHEEETQ
TSGYDADDDDDDSEVVVVVAGTLGNATLVARDALGRLRGFGGDVFEAWVE
VRGEKEGEIYGVKGGSGSFDGYNASVGLGSNGIPLTSPAAVEAATPAMVR
VEDLGSGNYTVSYQVYSAGEYLLRVALCRPGGLTGRYTSDSFFQNQEFHR
VDRQVPAAVAVMNFTWGVGAIVGTATDFAGVRWSGRIRQHVPHRCELGGI
VSRPDYSETFEFELGTALGGGDAARLWIDSVVVIDGFERGSGTVGDWEGA
EEGLGGGGRGFVNLTAGTLHEIYIEYSERRGDASLYLAWSSPSVSQQIVP
PTNLYW*
back to top

mRNA from alignment at Ecto-sp13_S_contig7057:870..7124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7057.18125.1 ID=mRNA_Ecto-sp13_S_contig7057.18125.1|Name=mRNA_Ecto-sp13_S_contig7057.18125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7057:870..7124+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATATGCCCGGGGATGGTTGGACCGGTGGACGACGGCATGTACTACTG TCTTGGCAAGGAACACGGATACTGCGATCGACGGTCCGGCACCTGTTTCT GCAACGTGGGGTATCAGGGAACTTCCTGCCAAGAGTGCTCCTCAACGCAC TACGAACAGGGTGGCTTGTGCTACCCCAAGCTGGTAAGTAAGGTCGGGGC ATGCTGTGCATGTTGTCTGCATGCTTCCTGGCCGGCACATACCCATGCGG CGACCATCACCAACAGTGTACACCAAATTTCTTCGCGATCCCCAATCGCC TTGGAACCCAAGTCTTGTCATGTTCCTAATGTGTCCTCTCAGGCTTGCAC GGGAGCTGTGGCGGGATTCCTTTCTGCATGTCTCCTTGCCGACGAAATTG AACATTCCTCGTGGCCCTGCCGCTGACTCCTACATGCAATGCTGTGTCTT TTCGTCTTCTTTGGCTTCTTCGTCACCAACTACTCGTATCGCTGTACCTG CAGCTATGCCCCAGTGACTGCAGCGGGGCAGGAACATGTCATCACTCCAA CGGCACCTGCTCGTGTTTGCCGCACCGGGTCGGCGACGACTGCTCCTCGA TCTACTGCTCCTCGGTGTTCAGCTCTCGTTGCACGGAATGCACCGCGGAC GGTTGCACGTCGTGCGAAAGCGGCTACTACGTGGACTATTTGGGTGGCGG AGTAGACTGCCTTCCGTGCAATCGCCACGATCCACGCTGCACGGAGTGAG CATTGAACATGCTGCTTGGTCCCACTTGAGTTGTCAGATGCGACCATAGA GTCAGTGCGATGTATCGCGCTAGCTCCTTCTGTGCGATTGGTTGGACATC CATCCGCGCTCCGCTATACCTCTGTCATTTCTCTCTCTGATGATGAAACG GTCGTGAAACATGTCATGCGACGTCTCCCGTACATTTTGGTACTCCATGA GCAAAATCACCAGCTGTGTGAAAACTCCAACCCCACTCCAAACCCTTTAT CACAACCACCACAACCATCACCATCGCAATCACTCAGGTGTGACGAAGAA TCTTGCCTCGAGTGCACAGATCCGCTCCTTTTGTCGATACGTCGATCCGG GGCGCGCATCGACGACCCCGAATTACCGTTTGATGAAATGGAGAGGGAGC TGCCTCACGCCCTTGAATTCGGGACGAAGGACCCTCGATATTTCGCATCA GCGGAAGCTTTTAACGTGGTGAGTATCAGCACCAACCGGGAGGGAAGCTA GGGCTCTGGAACAAGAAGATCGCCGTGTATGACACCCGTATGGCGTGGAC ATCAGTAACGTCCCATGTCGGGTTGGTGCGTCCCATGTCGGGGTTGAGGT CCATGTTGAGGAATACGGTGCAAAAGTGACAGCACATCGGCATTTCCAAT TCGCACTAATTGGGGGCACGATATCCCAGATTTCGCACAGCATGTGTTTC TTTTCATTTCGGACGCTTGAAACGACGGAATACGTAAGGGTTGCTTTCGG GTGTTGCTCTTATTCAGATTCACCGAAAGCGTTGCATGTGTCAAACATGT TGCAAACGCTGGTAGATGCAGCCGTCTCTGTTGGTAGAACAAAAACAAAA ACCCCTTAGCGAGACGTCTAACGTTTGCCCTGACCTTTTTTTGAGGCTGT TCCACAGGTGGCGAACGCGTCCTCATCACTGAACGAAACCAGCGTGGCGT GCGCCCAAGGAGTGTTCGGGGATGACTCTTGGGCGTGTGAGGGGAAAATT GTCAGCCATCGGGTGAGCTGCGACTGCCATGTGTACCACCCTTCTTCACA AAGCAAGGAGCACCTTCATGAGAAACCATTGCAAGTTTGTGCTACTGCAG GACCGATAAATGTGTTGCCCCGCTGGTGCACCCATGCACTGTTACCTCCT GCTTCGCCGGGGAGAACCATCAAGACCCACCTTGCACGCCGGCAAACTTC CCTCCAGTGGTGTTTCCATGCAGGCTGCTAGTCAACTCCAATGGGTGTAA AAACCCACCGAACCCCCAGCATATTCACTTGGAAGAGTGAGATGCGGTAT GGTTCAAAACGCGCAGCCAAGTCCTCCCACTATTCCAGTGAGAAGAGACG CGGGGAGCGCAGTCGCAGTTAACAACGACCCCCTAACCAACGCCTCTCGA GAAGGTATGTGGAAACCCGGGAACAATTTCGTTTTTATCCCCGGAGTACG AGGCCTTCGAGGACCCTTCGGCTTCGGCCGGGGCATACGCCGCCGCTGCG TACGGGACGGCCACCACCAACGGGACTGTCAGATTTACGGTGGTACGCAC CGGCGGCGGATACGGCACCGTCGGGGTGAGGTATCGGCTGCGACACGGAA CCACGGACGAGGCGGACGTCTCGCCCCACGCTTTCTACACTACCAGGTCT GTTTCGGTTTGAGTGGTTATTACATTTTGACGAACACCCAATAGACCACG GTAGGCTAGCAGTTTGTTTTGTGACAACGACAGGTTCTGCAAGTAAAACA TGTTCAAAGAGGCACATGAGGTTTCTGCTTTTTTGCATATCGCCCAGAGC AACTTCTGACTTCCCACCCTTTCCACCTCGCCTCAGGGTGAGGAGTTCTG TTTCTCACAGCGAGGGTATGCACCAACCAGGAGTGGTGCAAAGAGGGGGG GAGCGAACATGGACAGCAGCAGTCATCACGACATGTCACCCTTACGATCG TTCACGGAGACTGAATCCGATCAACGTTTCGACGATTGACGTTGTTTCCA TTCACGCTGAAACGATGATAAGACATACCCTTTGAACCAAGTTCTCCTTT GGTTGTCTGCGTTATCTCTTCCCCACTGACAGCGATGAACTCGTCTTTGA CCACGGGGTGGTAGAAATATCGATCCTTCTGGGAGTTCACGAAGACGGGG AGGTTGAAACCGAAGAATACTTCGACCTGTTCCTCCTCGAGCCGTGGGGC GGAGCGCGCCTTGGATCGCAGCAACGCACTAGAGTGACAATTTTCGATGC GGAGAGCAACGGAACAGTGACCGATCACTCGACAACTTCTTTGCTCTTCG ACCGGGAGAGCAGCGAAGACTATGACCATGAGGAGGAAACGCAAACTTCG GGTTACGATGCCGACGACGATGACGATGATAGTGAAGTTGTTGTTGTTGT TGCTGGGACGCTCGGGAACGCTACTCTTGTGGCCAGGGATGCGCTGGGAA GGTTGAGGGGCTTTGGTGGGGATGTCTTCGAGGCGTGGGTAGAGGTTCGG GGGGAAAAGGAGGGAGAGATCTACGGGGTCAAAGGGGGCAGCGGCTCCTT CGACGGCTACAACGCCTCCGTAGGTTTGGGGTCGAATGGCATACCCTTGA CGTCACCGGCGGCGGTAGAAGCAGCAACGCCGGCAATGGTCCGCGTGGAA GATCTCGGCAGCGGTAACTACACCGTCAGCTACCAGGTGAGCACCAAGAA GGACACAAGGCTCAGCTTTGTTAATACAAAATATGTGTACGTAATTGTGC CAAAGGCTGGCTGAACGGGGCACTATGCAATCTGGAACACAACACTCTGT GTGTGTCTCTCTGTGTCATCGCTGCTGCTCCCATCGAAAGATCGTTATCC GACAGAGAGATTCGAATTTGGGACAAATGCTGAAATAGCAACTGGGAAAA GCATCACTTGTCTCTTCCGCTCTGGTAAGCCTCGAGAGAAGGCGAAGCGT TTGTGAAATCCCATCCTCCCACTCCGCATGCAGAGGTTTCTTCTGCGATT ATATCAAAGGAGTTTCCTCCTGCGCCGAAGGCGCTCTCAGCATGGGCGGG GGGATATCCTAGGCGATCTCCTTCTGCCACATCAGGAGGCCTCACCAAAC CAAACGCTTCAATCAAATGACCCGCACTTGGAACAAAATCATTCGTATAC GCCACAGCGGGAGCTGTGACAATGATACCTAACCACACAGGCAAAAAGAG TCGTTTCTCGAACGTGTGGGCCGCACCACCCATGGCCTTCCTGCGCTTTA GCACTATCCCTTGAATCCTTACCACAGGCTTGACTCTAACCGAACCGAAC CTCAACCTCGACTATTCCTCCAGGTTTACAGCGCCGGGGAATACTTGCTT CGAGTGGCACTTTGTCGGCCTGGAGGTCTGACCGGGCGCTACACGAGCGA TTCCTTCTTTCAAAACCAGGAGTTCCATAGGGTAGACAGGCAAGTTCCCG CGGCGGTTGCGTTCATCGTTAGAGTTTGAGGCAGAAGACATTGCGGCAGA GGAGTTGGTGCGAGTCTTGTACGTTCGATCCCGAGGATCCATGAGCGCTG GCGCCCAAATCTCTCTTCGAGGCGGGCTTCACAATGATGTCCTCAGCGTT CGCCAACCACGACACCGAGTAGCTCAGTGGGTGCCAGTCATGCACGTCGA CCTGACGCATGTTGGAGGCGAGGTAGGTCGGTCAATGCAACTAATGGCGC ACGTCTACATAACGCGCTTTGGAGGCGTCGTATTTCCGTTCCCAACGCTC TCCGCCATGTTGGAAACTTTGAAAGCACACCTATGCCACTTCTACTTGAA GTTAAAAGCACGGTAGCAAGTAGCTCTTGAGAACTACTTTAACAGCCATA CCGCCTTGTCACTGTTCTTCTTTTCCAGGGTCATGAACTTCACTTGGGGT GTTGGAGCGATCGTTGGGACAGCCACGGATTTCGCGGGAGTCCGCTGGTC GGGCCGAATCAGGCAAGTTACAACCCGTTCAAGCATCGACTCAACAAGCG GTAGACCTAGTTGTCGATCTGCCTTGGGGAACCACCACTTTCACAATTAG ATTTCTCGGCGTCAACGTTGATGCCATGGTACGTTCGGTTTGGCGTTGAG ATTTCTGCTCTGCTTTTTCCTTCGTCGCATAGCCTTTTGAAAGACACTAA CGCACAACACGCAAGCTTCGTCAAGAACTACAACCGAGCACGTGCACACA CCCCAGTGTGTGATTGTCGCAGGAGCCCAGGGGAAGTAGTGCGAACTGAA TGCACATTGTTCGTCTCGAACGAAACGGGGGAGAAGACGGGGGTGGCGAG CGTGGGATCAGAAGGGAGGGTTTGGTTGTTGTCAGTCTCATGTACGCGTG AAGTGTCATGTCGCCGTAGGCCAACCTATCGCCACCAAGTCGGGAACGAG CGCGTCGGTCGTTCATTGGATCACGAAAGTTGGTAGAAAATGTGGAAATC GCCGTCGGCGGAGGTCGAATACTTTGTTTATCGTACCGATAGAAGGGGGT CCATTGCAAGTAATTCAGGGAACCAGATTCTCAGACGACACCTGCTATAT TATGACGGCAGGAACGTATCGACATTGTTGAGTGTAGATGGCTTCTCCGG TGCCTAGGTTCGCTTTTGTCACCAGCGGACAATGATCATGCCTAGTTCCC ACCAAGTGCTACGTAACCGATGCAAACATCACCTGTGAAATAGCCCCTAA CAAGCACGTGCCACATCGCTGTGAACTGGGCGGCATTGTTTCTAGGCCTG ACTACTCGGAAACCTTCGAGTTCGAATTGGGCACGGCCTTGGGAGGAGGA GATGCGGCGAGATTATGGATCGACAGTGTTGTCGTTATCGATGGCTTTGA ACGCGGCAGCGGAACTGTCGGTGATTGGGAAGGCGCGGAGGAGGGGCTAG GAGGCGGGGGCAGGGGCTTCGTCAACCTTACCGCTGGCACCTTGCATGAG ATCTACATCGAATACAGGTATGCACGTCCAGATCATGTGGTATAACTCAT CCTGTGGTGGACTGGTTTGAAAGCAACCTTGCATTTCCAATCATGTTGTG TTAAGTAAATAGCGGTTGTCACGACTAACTTCTGGATTGCATTCAAGTAG GATCGAGCACCGTGGTTTGCGAGTCTCGACTATCGATGCATGTGGGAACG TGCGTATACAGATTTCATATTGAGAATGGCTGTTTGCCTGTCCGCAACTG CAATATTAGTCTTGTCTAGTTCGTGGTGTGCGAAGAGAGTGTTTCCTTTC TATGTACGCAACCATGCAGATTTGCACACCGTTGTTCTTGGTGGCACCCA ATGTTACTGAAACGTAACTTGTTGTGAGACGCACTCACTCTTTCTTCCTC CCTTCTGCGTCACGACAATATTTGAACCCGATGTACGGACCTGAATAACC ACGCTATCGTCAAGCGAGAGGAGAGGGGATGCCTCGCTTTACCTTGCGTG GTCCAGCCCAAGTGTTTCCCAACAAATCGTTCCCCCAACGAACCTCTACT GGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7057:870..7124+

>mRNA_Ecto-sp13_S_contig7057.18125.1 ID=mRNA_Ecto-sp13_S_contig7057.18125.1|Name=mRNA_Ecto-sp13_S_contig7057.18125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2121bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7057:870..7124+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGGACCGGTGGACGACGGCATGTACTACTGTCTTGGCAAGGAACA
CGGATACTGCGATCGACGGTCCGGCACCTGTTTCTGCAACGTGGGGTATC
AGGGAACTTCCTGCCAAGAGTGCTCCTCAACGCACTACGAACAGGGTGGC
TTGTGCTACCCCAAGCTGCTATGCCCCAGTGACTGCAGCGGGGCAGGAAC
ATGTCATCACTCCAACGGCACCTGCTCGTGTTTGCCGCACCGGGTCGGCG
ACGACTGCTCCTCGATCTACTGCTCCTCGGTGTTCAGCTCTCGTTGCACG
GAATGCACCGCGGACGGTTGCACGTCGTGCGAAAGCGGCTACTACGTGGA
CTATTTGGGTGGCGGAGTAGACTGCCTTCCGTGCAATCGCCACGATCCAC
GCTGCACGGAGTGTGACGAAGAATCTTGCCTCGAGTGCACAGATCCGCTC
CTTTTGTCGATACGTCGATCCGGGGCGCGCATCGACGACCCCGAATTACC
GTTTGATGAAATGGAGAGGGAGCTGCCTCACGCCCTTGAATTCGGGACGA
AGGACCCTCGATATTTCGCATCAGCGGAAGCTTTTAACGTGGTGGCGAAC
GCGTCCTCATCACTGAACGAAACCAGCGTGGCGTGCGCCCAAGGAGTGTT
CGGGGATGACTCTTGGGCGTGTGAGGGGAAAATTGTCAGCCATCGGGTAT
GTGGAAACCCGGGAACAATTTCGTTTTTATCCCCGGAGTACGAGGCCTTC
GAGGACCCTTCGGCTTCGGCCGGGGCATACGCCGCCGCTGCGTACGGGAC
GGCCACCACCAACGGGACTGTCAGATTTACGGTGGTACGCACCGGCGGCG
GATACGGCACCGTCGGGGTGAGGTATCGGCTGCGACACGGAACCACGGAC
GAGGCGGACGTCTCGCCCCACGCTTTCTACACTACCAGCGATGAACTCGT
CTTTGACCACGGGGTGGTAGAAATATCGATCCTTCTGGGAGTTCACGAAG
ACGGGGAGGTTGAAACCGAAGAATACTTCGACCTGTTCCTCCTCGAGCCG
TGGGGCGGAGCGCGCCTTGGATCGCAGCAACGCACTAGAGTGACAATTTT
CGATGCGGAGAGCAACGGAACAGTGACCGATCACTCGACAACTTCTTTGC
TCTTCGACCGGGAGAGCAGCGAAGACTATGACCATGAGGAGGAAACGCAA
ACTTCGGGTTACGATGCCGACGACGATGACGATGATAGTGAAGTTGTTGT
TGTTGTTGCTGGGACGCTCGGGAACGCTACTCTTGTGGCCAGGGATGCGC
TGGGAAGGTTGAGGGGCTTTGGTGGGGATGTCTTCGAGGCGTGGGTAGAG
GTTCGGGGGGAAAAGGAGGGAGAGATCTACGGGGTCAAAGGGGGCAGCGG
CTCCTTCGACGGCTACAACGCCTCCGTAGGTTTGGGGTCGAATGGCATAC
CCTTGACGTCACCGGCGGCGGTAGAAGCAGCAACGCCGGCAATGGTCCGC
GTGGAAGATCTCGGCAGCGGTAACTACACCGTCAGCTACCAGGTTTACAG
CGCCGGGGAATACTTGCTTCGAGTGGCACTTTGTCGGCCTGGAGGTCTGA
CCGGGCGCTACACGAGCGATTCCTTCTTTCAAAACCAGGAGTTCCATAGG
GTAGACAGGCAAGTTCCCGCGGCGGTTGCGGTCATGAACTTCACTTGGGG
TGTTGGAGCGATCGTTGGGACAGCCACGGATTTCGCGGGAGTCCGCTGGT
CGGGCCGAATCAGGCAACACGTGCCACATCGCTGTGAACTGGGCGGCATT
GTTTCTAGGCCTGACTACTCGGAAACCTTCGAGTTCGAATTGGGCACGGC
CTTGGGAGGAGGAGATGCGGCGAGATTATGGATCGACAGTGTTGTCGTTA
TCGATGGCTTTGAACGCGGCAGCGGAACTGTCGGTGATTGGGAAGGCGCG
GAGGAGGGGCTAGGAGGCGGGGGCAGGGGCTTCGTCAACCTTACCGCTGG
CACCTTGCATGAGATCTACATCGAATACAGCGAGAGGAGAGGGGATGCCT
CGCTTTACCTTGCGTGGTCCAGCCCAAGTGTTTCCCAACAAATCGTTCCC
CCAACGAACCTCTACTGGTGA
back to top