mRNA_Ecto-sp13_S_contig7053.18123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7053.18123.1
Unique NamemRNA_Ecto-sp13_S_contig7053.18123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7053.18123.1 vs. uniprot
Match: D8LB13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB13_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 4.970e-133
Identity = 236/291 (81.10%), Postives = 246/291 (84.54%), Query Frame = 1 
Query:    1 QTYDDAAHPADITLGWAECDNGSCDWDEPATASFNVTCTDTITAAASTCTNVVLSDFGDFSGTYAEVADTSYDKQYSMAAGVETYSIYLDNGAWNVQPIEAGYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCSDGSSSSSGVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSRGVTAPSSSATSTYEPSGSSSDPDAPTAGISTDQPVTGGAAIETTGDEGDSGSDDLSG-GAIAAISAAVLAVVGGGLGVAFKHNSIHCCQTQHFNSAA 870
            +TYDDA HPADITLGWAECDN SCDWDEPATASFNVTC DT+TA ASTCTNVVLSDFGDFSGTYAEVADTSYDKQYSMA GVETYSIYL+N AWNVQP+EA YPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCS G SSSS VL            XXXXXXXXXXXXXXXXXXXX   PL RGV+APSSSATSTYEPSGSSSDPDAPTAG STD+P TG AA     D+GD         GAIAAISA VLAVVGGGLGVAFKHN+IHCCQT HF+S+A
Sbjct:  388 RTYDDAGHPADITLGWAECDNASCDWDEPATASFNVTCADTVTATASTCTNVVLSDFGDFSGTYAEVADTSYDKQYSMATGVETYSIYLNNDAWNVQPLEAEYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCS-GGSSSSDVLPTPSPAGVTDGTXXXXXXXXXXXXXXXXXXXXTEGPLPRGVSAPSSSATSTYEPSGSSSDPDAPTAGNSTDEPGTGDAANIEMDDDGDXXXXXXXXXGAIAAISAVVLAVVGGGLGVAFKHNNIHCCQTTHFSSSA 677
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BLAST of mRNA_Ecto-sp13_S_contig7053.18123.1 vs. uniprot
Match: A0A6H5JUT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT7_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 1.520e-61
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:  142 TCTNVVLSDFGDFSGTYAEVADTSYDKQYSMAAGVETYSIYLDNGAWNVQPIEAGYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCS 435
            TCT VVLSDFGDFSGTYAEVADTSYDKQYSMAAGVETYSIYLDNGAWN+QPIEA YPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCS
Sbjct:   84 TCTKVVLSDFGDFSGTYAEVADTSYDKQYSMAAGVETYSIYLDNGAWNMQPIEAVYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCS 181
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BLAST of mRNA_Ecto-sp13_S_contig7053.18123.1 vs. uniprot
Match: A0A6H5JRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD4_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 3.790e-39
Identity = 77/171 (45.03%), Postives = 105/171 (61.40%), Query Frame = 1 
Query:    1 QTYDDAAHPADITLGWAECDNGSCDWDEPATASFNVTCTDT-----------ITAA-----ASTCTNVVLSDFGDFSGTYAEVADTS-YDKQYSMAAGVETYSIYLDNGAWNVQPIEAGYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCSDGSSSSSGV 462
            +TYDDAAHPADIT  W+ECD   CD+ E  T +  +TC              ++ A     A+TCTN+ +SD G +SGTY EVA TS Y++ + MA G + Y +YL N AW + P    YP+YRTYDDA++PADIT  W ECDN YCD+ +   + + ITC+  + +S  +
Sbjct:   66 RTYDDAAHPADITQSWSECDAQFCDYVE-ITTTMTITCATAWLFLSHPRAACVSVAKSVKTAATCTNIAVSDLGSYSGTYREVAGTSSYEELFYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRTYDDAAHPADITQSWAECDNVYCDY-VEVATSMAITCAAATCTSIAI 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7053.18123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LB13_ECTSI4.970e-13381.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT7_9PHAE1.520e-6196.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRD4_9PHAE3.790e-3945.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7053contigEcto-sp13_S_contig7053:107..4830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size873
Hectar predicted targeting categoryother localisation
Exons8
Cds size873
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7053.18123.1prot_Ecto-sp13_S_contig7053.18123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7053 107..4830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.7710152-CDS-Ecto-sp13_S_contig7053:106..2241681463967.7710152-CDS-Ecto-sp13_S_contig7053:106..224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 107..224 +
1681463967.785129-CDS-Ecto-sp13_S_contig7053:484..5051681463967.785129-CDS-Ecto-sp13_S_contig7053:484..505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 485..505 +
1681463967.79673-CDS-Ecto-sp13_S_contig7053:1115..12971681463967.79673-CDS-Ecto-sp13_S_contig7053:1115..1297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 1116..1297 +
1681463967.8082905-CDS-Ecto-sp13_S_contig7053:1857..19721681463967.8082905-CDS-Ecto-sp13_S_contig7053:1857..1972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 1858..1972 +
1681463967.8193521-CDS-Ecto-sp13_S_contig7053:3347..34041681463967.8193521-CDS-Ecto-sp13_S_contig7053:3347..3404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 3348..3404 +
1681463967.8298926-CDS-Ecto-sp13_S_contig7053:3579..36421681463967.8298926-CDS-Ecto-sp13_S_contig7053:3579..3642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 3580..3642 +
1681463967.840588-CDS-Ecto-sp13_S_contig7053:3812..38781681463967.840588-CDS-Ecto-sp13_S_contig7053:3812..3878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 3813..3878 +
1681463967.8505638-CDS-Ecto-sp13_S_contig7053:4579..48301681463967.8505638-CDS-Ecto-sp13_S_contig7053:4579..4830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7053 4580..4830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7053.18123.1

>prot_Ecto-sp13_S_contig7053.18123.1 ID=prot_Ecto-sp13_S_contig7053.18123.1|Name=mRNA_Ecto-sp13_S_contig7053.18123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
QTYDDAAHPADITLGWAECDNGSCDWDEPATASFNVTCTDTITAAASTCT
NVVLSDFGDFSGTYAEVADTSYDKQYSMAAGVETYSIYLDNGAWNVQPIE
AGYPRYRTYDDASNPADITLEWVECDNSYCDFDIPSPSPIVITCSDGSSS
SSGVLPTPSPAGVGDVSGGSSSSEVLPTPSPAGVAETTEGPLSRGVTAPS
SSATSTYEPSGSSSDPDAPTAGISTDQPVTGGAAIETTGDEGDSGSDDLS
GGAIAAISAAVLAVVGGGLGVAFKHNSIHCCQTQHFNSAA*
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mRNA from alignment at Ecto-sp13_S_contig7053:107..4830+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7053.18123.1 ID=mRNA_Ecto-sp13_S_contig7053.18123.1|Name=mRNA_Ecto-sp13_S_contig7053.18123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7053:107..4830+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGTATGATGACGCCGCACACCCTGCGGACATCACCCTAGGTTGGGC
CGAATGCGACAACGGCTCTTGCGACTGGGACGAACCGGCGACGGCGTCCT
TTAACGTTACTTGCACAGGTGAGATTGCGCAGCCTGTTGCAGTGCACAGG
ATAAAGCTTAAGGTTGAACCCATCCTTGTGTGCATCCCTTGATATGTGCA
GCTCTTTGACGAACGATAGAAGAACAGAAGCGCCTGCACAACATACTCGA
AAATCCCACATGAAGCAATTGGACCAGGATTGTCGAAAGTGCCGCTGCGC
ATCTTGATCTACTCGAACGCTGACTACGACCAACCTGTCTTGCCCTCCCT
GCGTTGCTCCCGCTCTCCGGTTCCACAGACACCATCACCGCCGCAGCATG
TGAGACACTAGCATCTTGTTGCCCCGAACGCGGGGTGGCAGAAGGGGCAG
ATATGGTGGACCGGCGGGTCGTGCGTACTTCTGATCGAGCGATATATTAA
AGTACCCTTTTTTGTTCGATTCGCCCGTGCCACCGGCAGTGTTCCTCGCT
CACGTGTACCGCCACCAAACTGCAGCTTGCTCGTTTGATTTCGTAGCCAG
ACACGTGAAGTGCCTCAGTTGGGCTTCATTTCACACGGAAGGCTCGATCC
TGTTCATACGTGATGCTTTCTATTCACCAACCAAACGAACTGGATGCGCG
CTGTATTAGTGGTAGGGGTGCATCGATGTACGACGCTCCTGTCCGTTCAA
GGGTCTTAACCCAACCAACCTCAAGAAAAATAGCACATGGAACGTGGACC
TAATCTGGGTGAAGAATGATGCAAGGCGTGCTGACGTTTCGTCGTATGTC
AATGGGGGAGCAAATTCAGACTGCTCACTAGTGCACTGTGCAGTCGCTGT
GTATCCGTTACTCTCTCATGGTGCGCCTCGGCAAGCTTTTACTCTGGTAA
CCAACGAATCGAACTTCTGTACCGCGCACCTTGTGTCATGCACCCGCGCG
TACGACCAGCGACCTGCACCAACGTGGTCCTCTCCGACTTCGGCGACTTT
TCGGGTACTTACGCTGAGGTTGCGGACACCTCATACGACAAACAGTACTC
TATGGCGGCTGGGGTGGAAACCTACAGCATCTACCTAGATAATGGCGCTT
GGAACGTGCAGCCAATTGAGGCCGGATACCCCAGATACCGGGTGAGTCGG
GAGTCCATCTGCTCCACGCTTGGCTTTCAGCGGGCTGTTGGAGGACTGTC
AGCTTGTGAGCTACGCGGTATTGATGAGCTCGGAGATTCACCTCTCCTTC
TTGTGTGCGTATGTAGTACCTTGTCTTCGGACACCACTGCCATCGATTGG
TTCCGCAGCAAGTCGACTCAACTCTATCGTGCCTACCTTCCTAACGGCGA
CGCCAACCCCTTTCATAATGGGGACGGGGAACAACCCGGATGCATGAATC
TCCGTCGCCTCCTGTGTCTCCATACCGATTAAAGATGGGGCCAAACATGT
GCTGGTCCCTTCGGGGGAGAGGAGGAGGTCGAGTCGAGTTGTAGAAGCGT
TTGACGCAAGTCATGCCTTCAACAACGGCGCGGGCGTTGAAGTGTTGGGC
TCGGTTTCATTAGCTTCAACTTCGAGGTTGCATTAGTTCTGGTCGGCCTT
CGAGTACAGCTGGGGGTAGGTCTAGGGTGTACTTGTGTCGTCTGCGCTGC
TTGACTTCCTGCATGCACTACTGTGGTCGTCCGGACCTGTGTGTTGTCCA
GACGTACGACGATGCCTCGAACCCTGCGGACATTACTCTAGAGTGGGTCG
AATGCGACAACAGCTACTGTGACTTCGACATTCCATCGCCGTCACCAATT
GTCATCACTTGCTCAGGTGAGGTTCACCGCAAGGCATCACTCGCGTTTCC
CGACGTGATGACTTGTGTCTCAACAAGCCTAGGTTCAGGTTCGTCTTTCA
CTTTAACAGTGTCCTTGGTAGTTCCCCTTTTGGTCACCCGTGGGATCGTG
TGGGCACATTCTCGTCAGCTGTCAATAGGCAGCAAGTAGCGGGTGCTTGG
TCAAGTCGCCGTCGAGAAACGAGAGTGGCCATGCCTGATAGGCCGGCGTG
GGATACAAACAAGCCGAAGCGGACACCTGGTCTGGCACTCCAAACGGGCC
GGATGTTCGCGGAGTACTGTAGATCTGACAAATGATACGCTCTCCCCCAC
GCAAAGCAGGGGACAGAAAATGTTAATATCAAAACCTTTCACATCGCGGT
TCTACATATTTCATGTTTTATCAGAAGTGCAAGCCACAGTGGGGTAGACT
GTGCGGGCTCAACAACGAACGTAGACTACTGTACACTCGGGGTCCGTGAT
TGAGGGTACTGTTGATGAGGAGCTCCGATATGAGAGAGTCGAAATCAGTT
GTCACGGACTCGACCAGCGGTTGTATAGTTCGGTAGCTCTTGTTCCGGTA
CAAAAGGGGGCTCCGATATGAGAGGGTCAGTGCCTTTGCCACACCACCCT
CATATAGAGGAACCTTGTAGTCGTTTCCAGTCCTTCTCTGCTTGGTTCCC
TCGCCGAAGAGCGGAGTAGGAACTGAGGATATGGCTTTTGATGTTGACAT
TGGCTTGGAAAATGCCCTACCTTACGCTTCCTCAACACGCACGGCGTACT
GATGACGAGCGCCTTGTTTTGCGCGGTTTCATCAGATTCGACCACGGATT
CCTCCGTGGGGACCAGCACCTCAGACACCGGCAGCGGGGCGACTAGCGGT
GAGCGACGGACTAGTCGATAAGTGTTTGGTTTCTCCAGCCAAAAATCGCG
GCGCGTCAATGACGGAGTATCAAGCGTCCTGTTCCACCCTTGGATAGTGC
AACACGAAAATTGCGAAGGAGGTATTTCGGCCGGGGATTTGTTGCCAGCA
CACGCCAGGGCCGGATATTTAGTGGTTTGTGTAGCCTTGCGGAAATGGCG
AACGAAACGCGTGTTGCCCAAAATCCGGCCCTCGGCCTCCCCGGTTGTCC
GCTCTCTGCGGGCGCCACACGGAGGTAACGGAGGGGTCCTCATTGAGCAA
CGTATTGTTGACGTCGTCACCAACGGGTGTCACAGGTGCGATGACCTGAT
CACTCACAATGCTATGCTGCGCTCCTGGATCAACGACGTTGGATGCAGTA
CTCAGCCTTGTAACACCTGGCGAACAAAGCACGTGTTTGTCCTCATTGTA
CCCGTCGACCCCACGGTTGCTGCGCCACGCAGGGGCAACAGACGGGTCTT
CTTCGTCAAGCGGCGTGTTGCCGACACCGTCACCAGCGGGTGTTGGAGGT
ATGATGGCCTAATCACGCGCACCCGGTTCTTGGCATACTTCACTTTGCCC
TACCAGCGTTGGAAAAGTGTTGTTCACCTCGTGAAACATGGCGAACACAA
CGCTTGTTTACCCTCATCTCACCCTCATTATTCCCCTCAACCCCCCGGTG
TGTCGGCTCCCTGTGCCACACAGACGTGTCGGGCGGGTCATCGTCAAGCG
AGGTGTTGCCGACACCGTCACCAGCGGGTGTTGCAGGTATGATGACGTGG
ACATGTGCACAGCTTTGGGAATACTGCTGTGCCCCACCAGGTGCGGTTCT
TGCAGTGCTCGGCCTGCAGGGAACTTCGACGAACGAAAATCGTGTTGTTA
CCATCGCACTTATTTCGCCTCCTCACTTGCCTGTTTGTTATTTACCCCAC
GTGCAGAGACAACGGAGGGGCCTTTGTCAAGAGGCGTTACTGCACCGTCC
TCGTCTGCAACCTCAACATACGGTACGGGTATGAATGTCTTGGCTATCTT
TTTATTGATGCACGTCGTACATCTCTGCAACATGCGGTTCGTTACTATGT
AACGCGTCCAAATCTGCCGTGACTGGTACCTGACCTAACGCTCCAAACCT
ATGGGTGGACTGGTGGCAGGCTTGAATTATGACGATTACACAATAAAGTC
CTTCACACGGAAGAGAGAGCGAGAGAGAGAAAGAGAGAGAGAACCGAGGC
CCAAAGGTTATGGATCACTTGTGTCATCCTTGCTTTTTATCAAAGAGAGA
AAGAGAGCCGACAGTCAAGGCGAAGACTTCCCATGCATTGCGAAAATGAG
ATACCCTTCCCATGCATTGCGAAAATGAGATACCTACCTACCACGGCTCA
CCTCCGAGCCTCGCACTGCAAGTTATACGATACTGCAAGGTGTTACCATT
CATCGAAGTCCACTTAAAAATTGTTTCGTTTGTCTGCTGTTTTGTGAAGG
ATTTTTTTTTGCGTTCAAATTCTATTTTCTTGTAAGTTCCACTAAGCCAC
GCCTACAACACCTTATCTTGCATACACAGCTGGGCATGATATGTAGGCCA
AACAACCACAGTCTGTAGCCAAGTCATTGAAGAGTGGCAACCCGGTACTA
CGTCGAATCCAATCTTTCTTTGTGGGACCCACCCTCTTACTGTGAAAACT
CGTCCTCGAAACTTCGATCCCAGAACCATCAGGCAGCTCCAGCGACCCCG
ATGCCCCGACTGCCGGAATCAGCACCGATCAACCTGTCACTGGCGGCGCG
GCTATTGAGACGACCGGTGACGAAGGTGACAGTGGTAGCGATGACCTATC
GGGTGGGGCAATTGCCGCGATATCAGCGGCGGTTCTCGCTGTTGTGGGTG
GCGGACTGGGCGTAGCTTTCAAGCACAACAGTATCCACTGTTGCCAGACG
CAGCATTTCAACAGCGCTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7053:107..4830+

>mRNA_Ecto-sp13_S_contig7053.18123.1 ID=mRNA_Ecto-sp13_S_contig7053.18123.1|Name=mRNA_Ecto-sp13_S_contig7053.18123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7053:107..4830+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGTATGATGACGCCGCACACCCTGCGGACATCACCCTAGGTTGGGC
CGAATGCGACAACGGCTCTTGCGACTGGGACGAACCGGCGACGGCGTCCT
TTAACGTTACTTGCACAGACACCATCACCGCCGCAGCATCGACCTGCACC
AACGTGGTCCTCTCCGACTTCGGCGACTTTTCGGGTACTTACGCTGAGGT
TGCGGACACCTCATACGACAAACAGTACTCTATGGCGGCTGGGGTGGAAA
CCTACAGCATCTACCTAGATAATGGCGCTTGGAACGTGCAGCCAATTGAG
GCCGGATACCCCAGATACCGGACGTACGACGATGCCTCGAACCCTGCGGA
CATTACTCTAGAGTGGGTCGAATGCGACAACAGCTACTGTGACTTCGACA
TTCCATCGCCGTCACCAATTGTCATCACTTGCTCAGACGGGTCTTCTTCG
TCAAGCGGCGTGTTGCCGACACCGTCACCAGCGGGTGTTGGAGACGTGTC
GGGCGGGTCATCGTCAAGCGAGGTGTTGCCGACACCGTCACCAGCGGGTG
TTGCAGAGACAACGGAGGGGCCTTTGTCAAGAGGCGTTACTGCACCGTCC
TCGTCTGCAACCTCAACATACGAACCATCAGGCAGCTCCAGCGACCCCGA
TGCCCCGACTGCCGGAATCAGCACCGATCAACCTGTCACTGGCGGCGCGG
CTATTGAGACGACCGGTGACGAAGGTGACAGTGGTAGCGATGACCTATCG
GGTGGGGCAATTGCCGCGATATCAGCGGCGGTTCTCGCTGTTGTGGGTGG
CGGACTGGGCGTAGCTTTCAAGCACAACAGTATCCACTGTTGCCAGACGC
AGCATTTCAACAGCGCTGCGTGA
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