prot_Ecto-sp13_S_contig7051.18121.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7051.18121.1
Unique Nameprot_Ecto-sp13_S_contig7051.18121.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length152
Homology
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.190e-99
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0
Query:    1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151
            MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS
Sbjct:    1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.180e-23
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 0
Query:    8 ENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSR 148
            EN N L+FGP    +++ CL++ EV  +L  +       D+  T A++KT+ +VKRFG      K   T+ELR+AL+ FE   +  +  LH +EI+ + NLMQADS V+E +ALIPSL  +  EED+E +L I+RK   +R
Sbjct:   10 ENVNTLKFGP--GFEEIQCLTHTEVYQILTSKT-----HDVQRTQAYTKTIEHVKRFG-TADDEKHAITTELRQALETFERDTDQGTETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRKANAAR 142          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 96.7 bits (239), Expect = 1.340e-22
Identity = 66/145 (45.52%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 VDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT-SELREALQQ--FETFHEGESI--RLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRK 143
            V D E+A  L  G +   +  +CLSNAEV+V+LEKQ+ +YE ++  +T  F KT SYV+RF G    V   A+ +ELREAL    F+   EGE++  RL +FEI  ++NL     EVEE +ALIPSL  R  E+++E IL IV +
Sbjct:    8 VVDTEDAAELNLGDDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.330e-22
Identity = 65/145 (44.83%), Postives = 91/145 (62.76%), Query Frame = 0
Query:    4 VDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT-SELREALQQ--FETFHEGESI--RLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRK 143
            V D E+A  L  G +   +  +CLSNAEV+V+LEKQ+ +YE ++  +T  F KT SYV+RF G    V   A+ +ELREAL    F+   +GE++  RL +FEI  ++NL     EVEE +ALIPSL  R  E+++E IL IV +
Sbjct:    8 VVDTEDAAELNLGGDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.500e-21
Identity = 67/152 (44.08%), Postives = 92/152 (60.53%), Query Frame = 0
Query:    4 VDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT-SELREALQQFETFHEGES----IRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLY 150
            V D E+A  L  G +    D +CLSNAEV+V+LEKQ+ +YE ++  +T  F KT SYV+RF G    V   A+ +ELREAL       E +     IRL +FEI  ++NL     EVEE ++LIPSL  R  EE++E IL IV + + +R+Y
Sbjct:    8 VVDTEDAAELNLGEDFR--DETCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNP--EEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.480e-21
Identity = 64/154 (41.56%), Postives = 92/154 (59.74%), Query Frame = 0
Query:    6 DEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT-SELREALQQFETFHEGES-------IRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151
            D E+A  L  G +  ++  +CLSNAEV+V+LEKQ+ +YE  +  +T  F KT SYV+RF G    V   A+ +ELREAL  +E   E          +RL +FEI  ++NL     E EE +ALIPSL  + TEED++ IL I+ +   +R+Y+
Sbjct:   13 DTEDAAELNLGEDFQQE--TCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNP--EEPEEAMALIPSLNKKFTEEDIDEILQIIARTT-ARMYA 161          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A2P4XSY3_9STRA (RNA polymerase II n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSY3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.570e-21
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 0
Query:   26 CLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATS-ELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRK 143
            CLSNAEV+V+L+KQ++NY E++ + T  F KT SYV RF G+   V   A+  +LRE LQ     ++ E  RL +FEI  + NL     EVEE +AL+PSL    T+ ++E ILA+V +
Sbjct:   28 CLSNAEVAVILDKQKVNYVEQNKDFTSVFKKTQSYVTRFTGMKDPVSNQASVVQLRETLQSLSFEYDEEVHRLEEFEIACLTNL--TPEEVEEAVALVPSLPKHFTDHEIEEILALVSR 144          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 3.000e-21
Identity = 63/145 (43.45%), Postives = 90/145 (62.07%), Query Frame = 0
Query:    4 VDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT-SELREALQQ--FETFHEGE--SIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRK 143
            V D E+A  L  G +   +  +CLSNAEV+V+LEKQ+ +YE ++  +T  F KT SYV+RF G    V   A+ +ELREAL    F+   +G+   +RL +FEI  ++NL     EVEE +AL+PSL  R  E+++E IL IV +
Sbjct:    8 VIDTEDAAELNLGDDFRHE--TCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNP--EEVEESVALVPSLQKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC)

HSP 1 Score: 93.2 bits (230), Expect = 3.320e-21
Identity = 59/127 (46.46%), Postives = 80/127 (62.99%), Query Frame = 0
Query:   25 SCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTAT-SELREALQQFETFHEGES-------IRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRK 143
            +CLSNAEV+V+LEKQ+ +YE ++  +T  F KT SYV+RF G    V   A+ +ELREAL  +E   E          IRL +FEI  ++NL     E EE +ALIPSL  R TE+D+E IL+I+ +
Sbjct:   28 TCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNLNP--EEPEEAMALIPSLQKRFTEDDIEEILSIIAR 152          
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Match: A0A6A3KCE9_9STRA (RPOL4c domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KCE9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.820e-21
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 0
Query:   22 DDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGS-VKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRK 143
            +D  CLSNAEV+++LEKQ+INY E+    T AF KT SYV RF G     V   +  ELREALQ     H+ E  RL +FEI  ++NL    +E  E +ALIPSL    T+ ++E IL ++ +
Sbjct:   24 EDEVCLSNAEVAIILEKQKINYVEQKKTFTRAFKKTESYVLRFTGTRDPLVNQASVIELREALQSISFEHDDEVHRLEEFEIACLSNLNPEGAE--EAVALIPSLSKHFTDNEIEEILGMISR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7051.18121.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT81_ECTSI2.190e-99100.00RPOL4c domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YSR6_9STRA1.180e-2341.84HRDC-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
H3GHD4_PHYRM1.340e-2245.52RPOL4c domain-containing protein n=23 Tax=Oomycota... [more]
A0A3M6VV57_9STRA5.330e-2244.83RPOL4c domain-containing protein n=3 Tax=Peronospo... [more]
F0W0U0_9STRA1.500e-2144.08Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug... [more]
A0A024TL56_9STRA2.480e-2141.56RPOL4c domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A2P4XSY3_9STRA2.570e-2145.38RNA polymerase II n=1 Tax=Phytophthora palmivora v... [more]
A0A8K1FR52_PYTOL3.000e-2143.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067CZ22_SAPPC3.320e-2146.46RPOL4c domain-containing protein n=4 Tax=Saprolegn... [more]
A0A6A3KCE9_9STRA3.820e-2145.53RPOL4c domain-containing protein n=4 Tax=Phytophth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 17..148
e-value: 7.5E-5
score: 24.4
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 7..147
e-value: 1.3E-28
score: 101.4
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 26..144
e-value: 1.2E-12
score: 48.2
NoneNo IPR availablePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 6..145
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 6..145
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 6..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7051contigEcto-sp13_S_contig7051:1426..3235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7051.18121.1mRNA_Ecto-sp13_S_contig7051.18121.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7051 1426..3235 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7051.18121.1 ID=prot_Ecto-sp13_S_contig7051.18121.1|Name=mRNA_Ecto-sp13_S_contig7051.18121.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINV
TPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQF
EIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLY
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR038324Rpb4/RPC9_sf
IPR005574RPB4/RPC9
IPR010997HRDC-like_sf