mRNA_Ecto-sp13_S_contig7051.18120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7051.18120.1
Unique NamemRNA_Ecto-sp13_S_contig7051.18120.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7051.18120.1 vs. uniprot
Match: D7FT82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT82_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.420e-68
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 LALCAITIVPVRVVLIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLGPSFVMKRT 324
            LALCAITIVP+RVVLIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLGPSFVMKRT
Sbjct:   55 LALCAITIVPLRVVLIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLGPSFVMKRT 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7051.18120.1 vs. uniprot
Match: A0A6H5K2Q1_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Q1_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 3.810e-64
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 LALCAITIVPVRVVLIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLGPSFVMKRT 324
            LALCAITIVPVRV LIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRG+PRVFVSNHISFIEVLVFLHQLGPSFVMKRT
Sbjct:   55 LALCAITIVPVRVALIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGQPRVFVSNHISFIEVLVFLHQLGPSFVMKRT 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7051.18120.1 vs. uniprot
Match: M1UWM2_CYAM1 (Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UWM2_CYAM1)

HSP 1 Score: 53.9 bits (128), Expect = 4.190e-6
Identity = 26/73 (35.62%), Postives = 39/73 (53.42%), Query Frame = 1 
Query:  103 PDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLGPSFVMKR 321
            P   W   I    +R+ SRFLLL+ G+W V   G   +        + VSNH+SF ++L F++   P+FV K+
Sbjct:  160 PLPRWRRRIVFGVLRFFSRFLLLVYGFWRVREFGDLGSRQNLSSGTLIVSNHVSFFDILYFIYAFAPAFVAKK 232
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7051.18120.1 vs. uniprot
Match: R7Q9H3_CHOCR (PlsC domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9H3_CHOCR)

HSP 1 Score: 52.0 bits (123), Expect = 1.920e-5
Identity = 33/116 (28.45%), Postives = 53/116 (45.69%), Query Frame = 1 
Query:    7 LCAITIVPVRVVLIAVFLSSYYVLALSF-----------MTVAPDRPWAHAISIFCVRWASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLGPSFVMKR 321
            LCA+ ++P+R+++  V     Y+L L F            +  P   W  A+ +F  +  +R LLL LG+WTV  +          +    VSNH S  +  +  +   P+FV KR
Sbjct:   56 LCAVLLIPLRLLVAVVATLLSYLLVLVFGPPVTARSVATFSATPLPAWRRAVCVFATKLLARALLLGLGFWTVRGRDAPAYDHAAAQKATIVSNHSSLADPCLLAYLYAPAFVAKR 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7051.18120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FT82_ECTSI1.420e-6899.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2Q1_9PHAE3.810e-6498.15PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
M1UWM2_CYAM14.190e-635.62Similar to 1-acyl-sn-glycerol-3-phosphate acyltran... [more]
R7Q9H3_CHOCR1.920e-528.45PlsC domain-containing protein n=1 Tax=Chondrus cr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7051contigEcto-sp13_S_contig7051:174..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score61.2
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog57918.XP_004291897.1
Model size327
KEGG rclassRC00004,RC00037
KEGG koko:K13510
KEGG ReactionR01318,R03437,R03438,R09036
KEGG Pathwayko00564,ko00565,ko01100,map00564,map00565,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0000038,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005794,GO:0006082,GO:0006629,GO:0006631,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0047184,GO:0050200,GO:0071617,GO:0071618,GO:0071704,GO:0090407,GO:1901576
Exons1
EggNOG free text desc.Acyltransferase
EggNOG OGs37SWH@33090,3GH40@35493,4JK3E@91835,COG0204@1,KOG4666@2759
EC2.3.1.23,2.3.1.67
Cds size327
COG Functional cat.I
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.6297631-CDS-Ecto-sp13_S_contig7051:173..5001681463967.6297631-CDS-Ecto-sp13_S_contig7051:173..500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7051 174..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7051.18120.1prot_Ecto-sp13_S_contig7051.18120.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7051 174..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7051.18120.1

>prot_Ecto-sp13_S_contig7051.18120.1 ID=prot_Ecto-sp13_S_contig7051.18120.1|Name=mRNA_Ecto-sp13_S_contig7051.18120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
LALCAITIVPVRVVLIAVFLSSYYVLALSFMTVAPDRPWAHAISIFCVRW
ASRFLLLLLGYWTVDVKGMEENAGRRGEPRVFVSNHISFIEVLVFLHQLG
PSFVMKRT*
back to top

mRNA from alignment at Ecto-sp13_S_contig7051:174..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7051.18120.1 ID=mRNA_Ecto-sp13_S_contig7051.18120.1|Name=mRNA_Ecto-sp13_S_contig7051.18120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7051:174..500- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGCTCTGTGCGCCATCACCATTGTCCCCGTGCGCGTGGTGCTCATCGC
GGTGTTCCTTTCGAGCTATTATGTTCTCGCCCTGTCCTTCATGACGGTCG
CTCCCGATCGACCCTGGGCACATGCGATCAGCATCTTCTGCGTTCGATGG
GCGTCGCGTTTCCTGCTACTGCTCCTCGGCTACTGGACCGTGGACGTCAA
AGGGATGGAGGAGAATGCTGGGCGAAGGGGGGAGCCGCGAGTGTTCGTGT
CGAACCACATCAGCTTCATCGAAGTGCTCGTCTTCTTGCATCAGCTCGGG
CCGTCTTTCGTCATGAAACGAACGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7051:174..500-

>mRNA_Ecto-sp13_S_contig7051.18120.1 ID=mRNA_Ecto-sp13_S_contig7051.18120.1|Name=mRNA_Ecto-sp13_S_contig7051.18120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7051:174..500- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGCTCTGTGCGCCATCACCATTGTCCCCGTGCGCGTGGTGCTCATCGC
GGTGTTCCTTTCGAGCTATTATGTTCTCGCCCTGTCCTTCATGACGGTCG
CTCCCGATCGACCCTGGGCACATGCGATCAGCATCTTCTGCGTTCGATGG
GCGTCGCGTTTCCTGCTACTGCTCCTCGGCTACTGGACCGTGGACGTCAA
AGGGATGGAGGAGAATGCTGGGCGAAGGGGGGAGCCGCGAGTGTTCGTGT
CGAACCACATCAGCTTCATCGAAGTGCTCGTCTTCTTGCATCAGCTCGGG
CCGTCTTTCGTCATGAAACGAACGTGA
back to top