mRNA_Ecto-sp13_S_contig705.18115.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig705.18115.1
Unique NamemRNA_Ecto-sp13_S_contig705.18115.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig705.18115.1 vs. uniprot
Match: A0A6H5K5L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.250e-37
Identity = 103/233 (44.21%), Postives = 125/233 (53.65%), Query Frame = 3 
Query:  192 KSDVQEERQTAPAKKPKRACQGVQETGIPCGYQARAGALFCKVHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPRAKPAETKPEPRPCKXXXXXXXXXXXXXXXXXGKPEAQPHLRPPTTQPEVGSSCQAIALP-FRSRCFLVRDGPSRFCTMHRPLWHQKDTPAWGLPPGAPLPDHNPTICLAPVEETGLRCCYQRCGASRWCAQHFREWHGKDTPAWRPCPA*SPK 887
            K  VQ++   A  KKP  ACQG+Q++G+PCG + R    FC+ HQ                                     P  TK   R   XXXXXXXXXXXXXXXXX                E+ S      +P F  RC ++  G SRFCT HRP+WHQKD+P W LPP   +PD +PTICLA V  TGLRC Y+R G SRWC +H +EWHG+D+PAWRPCP  +PK
Sbjct:    3 KRPVQKKCTKATGKKPSVACQGMQQSGVPCGNKTRDDTQFCRRHQ-------------------------------------PKATKTRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXEMESPICLARMPVFGLRCNMMCFGESRFCTEHRPMWHQKDSPIWDLPPATMVPDSDPTICLAWVASTGLRCSYKRYGPSRWCGEHCKEWHGQDSPAWRPCPWRTPK 195
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BLAST of mRNA_Ecto-sp13_S_contig705.18115.1 vs. uniprot
Match: D8LEB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB9_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.850e-32
Identity = 62/105 (59.05%), Postives = 71/105 (67.62%), Query Frame = 3 
Query:  558 PTTQPEVGSSCQAIALPFRSRCFLVRDGPSRFCTMHRPLWHQKDTPAWGLPPGAPLPDHNPTICLAPVEETGLRCCYQRCGASRWCAQHFREWHGKDTPAWRPCP 872
            PTT     S C A    F +RC + R G SRFC  HRP WHQKD+P WGL P   +PD +PTICLA V  +GLRC  +R G SRWC +HF EWHGKD+PAWRPCP
Sbjct:  200 PTTIEVKSSICLARMPVFGTRCNMHRIGESRFCAEHRPKWHQKDSPIWGLLPVTMVPDSDPTICLAWVTSSGLRCSNKRYGLSRWCVKHFSEWHGKDSPAWRPCP 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig705.18115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5L1_9PHAE2.250e-3744.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEB9_ECTSI1.850e-3259.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig705contigEcto-sp13_S_contig705:2174..6883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1697
Hectar predicted targeting categoryother localisation
Exons4
Cds size870
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig705.18115.1prot_Ecto-sp13_S_contig705.18115.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig705 2182..6064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.2772245-UTR-Ecto-sp13_S_contig705:2173..21811681463967.2772245-UTR-Ecto-sp13_S_contig705:2173..2181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig705 2174..2181 +
1681463967.339466-UTR-Ecto-sp13_S_contig705:6064..68831681463967.339466-UTR-Ecto-sp13_S_contig705:6064..6883Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig705 6065..6883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.2868378-CDS-Ecto-sp13_S_contig705:2181..24101681463967.2868378-CDS-Ecto-sp13_S_contig705:2181..2410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig705 2182..2410 +
1681463967.2980032-CDS-Ecto-sp13_S_contig705:4241..43371681463967.2980032-CDS-Ecto-sp13_S_contig705:4241..4337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig705 4242..4337 +
1681463967.3124413-CDS-Ecto-sp13_S_contig705:4791..48811681463967.3124413-CDS-Ecto-sp13_S_contig705:4791..4881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig705 4792..4881 +
1681463967.3262227-CDS-Ecto-sp13_S_contig705:5609..60641681463967.3262227-CDS-Ecto-sp13_S_contig705:5609..6064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig705 5610..6064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig705.18115.1

>prot_Ecto-sp13_S_contig705.18115.1 ID=prot_Ecto-sp13_S_contig705.18115.1|Name=mRNA_Ecto-sp13_S_contig705.18115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp
MAKHAKREGKGKKRVKKQPRRKADTVIDWDHIDPADLSSDSDSDSEVSGP
PVEKKRKKTGRKSDVQEERQTAPAKKPKRACQGVQETGIPCGYQARAGAL
FCKVHQPKGKCEAIKKDGDKCECSAEDGTNFCGRHRPEAPRAKPAETKPE
PRPCKVKPTETKPEPRPCPLRTGKPEAQPHLRPPTTQPEVGSSCQAIALP
FRSRCFLVRDGPSRFCTMHRPLWHQKDTPAWGLPPGAPLPDHNPTICLAP
VEETGLRCCYQRCGASRWCAQHFREWHGKDTPAWRPCPA*
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mRNA from alignment at Ecto-sp13_S_contig705:2174..6883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig705.18115.1 ID=mRNA_Ecto-sp13_S_contig705.18115.1|Name=mRNA_Ecto-sp13_S_contig705.18115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4710bp|location=Sequence derived from alignment at Ecto-sp13_S_contig705:2174..6883+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAGGCGATGGCGAAGCATGCCAAGCGCGAAGGCAAGGGCAAGAAGCGA
GTAAAGAAGCAACCCAGGAGAAAAGCTGACACTGTCATCGACTGGGACCA
CATCGACCCGGCGGACCTCAGCAGCGACAGCGACAGCGACAGCGAGGTGT
CCGGGCCGCCTGTAGAGAAGAAGCGCAAGAAGACGGGGCGCAAGTCCGAC
GTGCAGGAGGAGCGCCAGACAGCGCCGGCGAAGAAGCGTGAGTGAAGTTC
GTAGCCAAGTCCGTACGTGGTGGACTGTGGCGAGGTCCGAACACGTTTGC
GGGATTCATCTTCTGTCCTCAGCAATTTGTTTCATGCTCCTATGTACTAG
GGCACGGAAGCCCCCCCCCGCCGCTTCAAGGCGGGGGGGGGGCGAAGAGG
TCGTGTTGTGCTGCCGTGTAAACTCGGCGTACACGTTCGGTTGTCGGTAT
CCATGGTGGCAATCCATGTGGTGTGTTGCATGTCGATCTTGCGACGTGTT
GCGGAGTGTCACGACGGGAATGTGACAAAGGCGACGTTACAACTGGACTG
TGTGAAGACGATAGGACGCGGCACACTCCACGACTGCTAACTGTCTGATG
ACACACCCATTACCAAAAGAGAAGTCGTGCGTTGCTTCATTCATGGGTGT
GGTGTTCTGGGACGTGCAGGATGTGAGCGTAGTATGTGCAGGCACCAATT
GAGGGTTGCCAATTGAGAGGTTGCTGGAGCCAAACAGTGTTTGGCGTTCG
ATCACGTTCTTCCTATGGACGAAGCAATTAATGGTCATCAACAAAGCTTC
CCGCATCGCCTCTCGACTGATGCCTCAACGATCGCGTTGCTTTGTCGAAC
AGTGTCTATATTGGTTGGACTTGTGGCGCGCGGTACAGAAAGGATGGCGT
CCTTCATCTGCCACGAAAAAAAAAGCACGGGCAAAAAAAAATCCGTACAT
GATGTGTGTGTGTTGTGTGCTGTCGTCACATTTAAAGTCATCCCGGTCTC
TCTACCAAGTACCTCCATACGTCCGTACTGTTCCAGCAGACACGGCCAGC
TCCCGTGGTCACAAGGTAACTTACCCTAAAAAAGGTAAACTGGAAATAAA
TATGGACCGAAGGGTCAGCAGAGTGATACCATCGGCAGACAAAACCAACT
CAAATAGTTTGAAGCCCTCCGCTCCCCTCTGCACGCTACGCGAGGCTAAA
AATAAACATTTTGGAAAAATCGACACCACCGACTTCGGGGGTACGCACGC
CCCGGTCCTTTGTTGAGTACTTTTACACTGCCAAGGTATTCCGTGCCGGG
TTTACGCCGACCAGGCAACCAAATCGAGTCCTCCACCCCGATTCTAAAGC
GCAAGGCGCACGTATGGCACGGGGGATGGGAAACCAAAAATAATACAACA
CAAGTCCAGAAAATGAACAAAATGCCTCGTGTTATCTATGTACTAATGTA
CCAATGCACTCTCCTCTTCCGATGGCTGGCGAGTGTCCGATGATGGAGGC
CGAGGGCAACAGTAAACGCGAGCAGGAAGAAAGTACTGGCTAACGAAAAC
CAACAGTGGCTTACAAAACCAGCAGGCCCAAGGCTACACATCCAACAAAG
GCCAGCAAGCTAAAGTTTCACGTCATTGTTCCTTGGGGGGGAGGGGAGGG
GGGGTTAGGCAAGGAGTCTCAATATTAGTCCATATTTTCAAGTAGTGCGA
CGTTGACAACGACGACAACAACTTCGAGTATTAATATAACATGATGTAGA
CGATTGGCTCGCTCACACGCCATGTGGTTCGTGACAAAGAGTTTGGTTGA
ACCTTGGGTGCGAGGTGTGCAATACATAGCGTACGTGGCAAAATATGTAC
CAGCTTCGACGCGACATGAAAGTTAGTCTATACGGTAAGCTGGCCACAAA
AGTCAAAGTACTACTCTGCACGTGCCGGCTGAGTGTATCTTGTGAAAGAA
GAGCTTATTGATGCACCCACGTACAGCCTGAAGTGTGTCTTGTTCATTAA
CGAGCTGTTGCATTCCCCTTCGCGAACTGATCTTCGCACCCCCCCACCAA
AACATATCCGCCGGTCAGCTAAACGTGCATGCCAGGGTGTGCAGGAAACG
GGTATCCCGTGCGGCTACCAAGCGAGGGCCGGCGCCTTGTTCTGTAAGGT
TCACCAGCCGAAAGGTGTGTCGCGAAAAACGCGTGAATAGGCGAACGAGC
GACAAGCGGTTGCGTCTCATCAGCTGCTTCTTCCGTTTCCGTCTGCTATC
TACCCAAATTGTGTACGTAAAGGTAACAGAGTATCTGTTGGCAGTCAGGT
TTGGCCTCGGCGTTGGGGTGCACGAGCTGCGCTGATTTGTTCTCAACTTT
TCCAACTTCGTTTGTCTCTGCGTGGGTCTCGGCAAGATAAGAGAGCAAAG
TAACGCTGACTTGGTTCATACTCAAGACACCGGCGGTGTGTAGCACTGAG
ATGCCACCTGCGGGTGGGTCTTGTAGGAGCTGATGGTGTTTGGCGTGCTT
GGGAGGGCTCGTCTATGCTCCCACGTACCAACTTGTCGAGTGCGAGATAC
GCGTGGAATTCAACTTCGTGCATTTCTCTTCGACTCCCCCATCCAAACAC
CCCCCGGTCCAACTTCAGGTAAATGCGAGGCTATCAAGAAGGATGGGGAC
AAGTGCGAATGTTCAGCAGAAGACGGAACCAATTTCTGTGGCCGTCACCG
ACCGGAAGGTTTGTCCCGAGAAATGAGGGGTTTGGTCTGAACTGTCATCT
ACCCGAAATGTAGTAACTCAAGTGTTGAGGCAATCAGGTTACACCGGGGG
GCGTTTAAATTGCGGTAACTCGCGCTTCCCAAGCATCACTGGCCTGGCTC
ACCTTCCGTTGTTTAGGCCCTTCGAACACCGGCCGACCACATGTGACTAC
TGTGTATGCATAGCCTCTTTCTTTTTTTTTTGGGGGGGGGGAAGTAGGTG
TGACCCTCAGCTTATCTGATTGAAGCAGCAGTGGATCCAGTCGTTCGGTC
TCTTAGACCCAGTCAATGGCAATTCCTTCCTCAACATCCCAAGATCCAAG
CATTTCCGCTCTACATGAGACTCTGGTGGCTAGTCTTGCTTCATGTACCA
AGTCCCCCTGCGGGCGTGTTCGAAATTGTTGTCGACAATCCGAACGGGCA
CTTTTGTGCTCGTAAGGCTTTATAAATTAATTTATTTCGTTTGGTTCAAG
TTGTGGTTTGGGTCGCGTTGCACTCTCAATCAAGCATGGTCGGGACAAGA
CACTCAGCCGCTGGCACGGGTTAGCTGCCGATGTGGTGCATCATATCAAA
GTTGCGCAAATCAGGCGTACGATTGCCTATAAACGCGGCTGAGACCCACA
CAATTGAACCGACCCTTGTCCTTGATGAATATGGCCTCTCTCCGTGTCCT
CGTCTTTCACCGTCCGCTCGCCCCCGTGTCTTGAAGCTCCCAGAGCCAAA
CCCGCGGAGACCAAGCCCGAACCCCGGCCGTGCAAAGTCAAACCTACGGA
GACCAAGCCCGAACCCCGGCCGTGCCCGCTCCGTACAGGCAAGCCCGAAG
CTCAGCCGCACCTACGACCTCCAACCACACAGCCTGAAGTGGGTTCCAGC
TGCCAGGCTATAGCCCTCCCCTTTCGAAGTAGGTGCTTCCTCGTGCGTGA
TGGCCCATCTCGCTTCTGCACCATGCACCGGCCCTTGTGGCACCAAAAAG
ACACTCCCGCTTGGGGCCTGCCTCCTGGCGCACCTCTGCCCGACCACAAC
CCCACCATCTGTCTGGCTCCGGTCGAGGAAACTGGGCTGAGGTGCTGCTA
CCAGCGTTGCGGCGCATCCCGCTGGTGCGCCCAGCACTTCAGGGAATGGC
ACGGAAAGGACACCCCTGCGTGGCGTCCCTGTCCTGCGTGAAGCCCGAAG
CGATTTGCATCTGCCCGGCTACGGTCATCGCCACCTTTGGGATCGAGGCG
CGCCGGCAAACCGCAAAGGTGAAGCCCTCTGGTGCGGTAGGTACGTGAGC
CCGTGGCAAGTGGCGAAAGTACAGCTGCGGACGACGGGAACCAGAAACTG
GCAAGTAGGTTTGGTCTTTCGAGCTTTATGTCGACAGCAAATTCTCAAGC
AGGGCGATCGATCGCCGGAGCGTTGGCGGTGTTCTGATTTTGTGTGGGGG
TGGTTGCGAAGCGTTCCCTCGAAGACGCAACGGTGTTCGTCATTCTGTCC
TCCGAGGAGGCGGAACACGTGCGATGGCTGATGGGATGGAGGAGAAAAGT
AGCGGGGATGGCGGCGGGGGCAAAGAGAAAGACGGCGATGAAGAGAAGGA
GCTAGAGGACGGAGAGAGGGAAATCAATCCCTTGGAAGGACGTAGGGGAG
ACCAGTCTACGCTGCCGGCAAGAGCGTCCAATCAGCGCTGGCTTGATGCT
GCATTTTTTTTCCTTTTTTTTTGGTCATCACATTTATTTCCAGATTGTCG
TAAGGGCGCCTTGCCGCGTAGTTTCCGTTTTTTGTGGGTGCTTGTTGATG
TGTGCCATGTCTCTCCAACTTTAATCTGTCTGCTTGCCCCACACATGAAG
GGTTTCTTCCTTGCATTGGGTCCAGTACGTCCACGGCCGGTCGCGTCGTT
GGGAATATCCTTGGGGTGGATTTATCATGATGAAAAAGCCAGTTCATTGT
TCGCACGATGAAATTGTTGTGCTGTGAATCACCGGCTGTCATTGTGCGGC
TGCAAGTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig705:2174..6883+

>mRNA_Ecto-sp13_S_contig705.18115.1 ID=mRNA_Ecto-sp13_S_contig705.18115.1|Name=mRNA_Ecto-sp13_S_contig705.18115.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig705:2174..6883+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGCATGCCAAGCGCGAAGGCAAGGGCAAGAAGCGAGTAAAGAA
GCAACCCAGGAGAAAAGCTGACACTGTCATCGACTGGGACCACATCGACC
CGGCGGACCTCAGCAGCGACAGCGACAGCGACAGCGAGGTGTCCGGGCCG
CCTGTAGAGAAGAAGCGCAAGAAGACGGGGCGCAAGTCCGACGTGCAGGA
GGAGCGCCAGACAGCGCCGGCGAAGAAGCCTAAACGTGCATGCCAGGGTG
TGCAGGAAACGGGTATCCCGTGCGGCTACCAAGCGAGGGCCGGCGCCTTG
TTCTGTAAGGTTCACCAGCCGAAAGGTAAATGCGAGGCTATCAAGAAGGA
TGGGGACAAGTGCGAATGTTCAGCAGAAGACGGAACCAATTTCTGTGGCC
GTCACCGACCGGAAGCTCCCAGAGCCAAACCCGCGGAGACCAAGCCCGAA
CCCCGGCCGTGCAAAGTCAAACCTACGGAGACCAAGCCCGAACCCCGGCC
GTGCCCGCTCCGTACAGGCAAGCCCGAAGCTCAGCCGCACCTACGACCTC
CAACCACACAGCCTGAAGTGGGTTCCAGCTGCCAGGCTATAGCCCTCCCC
TTTCGAAGTAGGTGCTTCCTCGTGCGTGATGGCCCATCTCGCTTCTGCAC
CATGCACCGGCCCTTGTGGCACCAAAAAGACACTCCCGCTTGGGGCCTGC
CTCCTGGCGCACCTCTGCCCGACCACAACCCCACCATCTGTCTGGCTCCG
GTCGAGGAAACTGGGCTGAGGTGCTGCTACCAGCGTTGCGGCGCATCCCG
CTGGTGCGCCCAGCACTTCAGGGAATGGCACGGAAAGGACACCCCTGCGT
GGCGTCCCTGTCCTGCGTGA
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