mRNA_Ecto-sp13_S_contig70467.18112.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70467.18112.1
Unique NamemRNA_Ecto-sp13_S_contig70467.18112.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A6H5KRE0_9PHAE (Quinolinate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRE0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 9.220e-30
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV
Sbjct:  146 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 206
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: D7FHH3_ECTSI (Quinolinate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.540e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV
Sbjct:  136 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 196
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A836CLI9_9STRA (Quinolinate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI9_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.430e-18
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QG L+AL W HV++ADSLAMGDAAV MA+ G  S+ACLGVDFM+ESV+ATLD+ GF  VPV
Sbjct:  114 QGTLSALSWPHVTIADSLAMGDAAVTMAKGGAKSIACLGVDFMSESVKATLDASGFADVPV 174
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A7S2UTF8_9STRA (Quinolinate synthase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTF8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.780e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QGAL+A+KW H+ VADSL MGDAAV MA+ G SS+ACLGVDFM+E VRA +DS G+  VPV
Sbjct:   91 QGALSAVKWPHIHVADSLVMGDAAVNMAKGGASSIACLGVDFMSEGVRAVMDSAGYDQVPV 151
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A7S1XZZ1_9STRA (Quinolinate synthase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZZ1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.160e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QGAL+ L W HV +ADSLAMGDAAVR AEAG ++VA LGVDFMAESVRATLD++G+  +PV
Sbjct:  102 QGALSRLDWPHVFIADSLAMGDAAVRQAEAGATAVAVLGVDFMAESVRATLDAQGWGHIPV 162
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: K3X0N9_GLOUD (Quinolinate synthase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0N9_GLOUD)

HSP 1 Score: 83.2 bits (204), Expect = 3.630e-17
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QG L++LKWEH  +ADSLAMG+AA +MA+ G+ SVA LGVDFM+ESVRA LDS GF+ +PV
Sbjct:   29 QGILSSLKWEHTFIADSLAMGEAAAKMAKKGIQSVAVLGVDFMSESVRANLDSNGFEHIPV 89
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A7R9U5L7_9STRA (Quinolinate synthase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5L7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.080e-17
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QGAL  LKW HV +ADSLAMGDAA R  +AG +SVA LGVDFMAESVRATLD+ G + VPV
Sbjct:   97 QGALTRLKWPHVFIADSLAMGDAAARQVDAGATSVAVLGVDFMAESVRATLDAHGHRHVPV 157
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A7S2SV78_9STRA (Quinolinate synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV78_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.440e-17
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QG L+ L W HV  ADSLAMGDAAV+MA  G +S+ CLGVDFMAESV+ATL+S+GF+ +PV
Sbjct:   84 QGILSGLTWPHVFTADSLAMGDAAVKMAREGATSIVCLGVDFMAESVKATLESQGFKDLPV 144
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A484EGS4_BRELC (Quinolinate synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGS4_BRELC)

HSP 1 Score: 82.4 bits (202), Expect = 7.560e-17
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QG LA+L W H+ VADSLAMG+AA +MA++G+ SVA LGVDFM+ESVRA LDS GF+ +PV
Sbjct:   95 QGILASLSWPHIIVADSLAMGEAAAKMAQSGIRSVAVLGVDFMSESVRANLDSNGFEHIPV 155
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BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Match: A0A6G0WM88_9STRA (Quinolinate synthase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM88_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-16
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRATLDSRGFQGVPV 183
            QG L++LKW H  +ADSLAMG+AA  MA+ G  ++ACLGVDFM+ESVRA LDS GFQ +PV
Sbjct:   84 QGVLSSLKWPHTLIADSLAMGEAAAVMAKNGAKAIACLGVDFMSESVRANLDSNGFQNIPV 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70467.18112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRE0_9PHAE9.220e-30100.00Quinolinate synthase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7FHH3_ECTSI2.540e-28100.00Quinolinate synthase n=1 Tax=Ectocarpus siliculosu... [more]
A0A836CLI9_9STRA2.430e-1870.49Quinolinate synthase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2UTF8_9STRA3.780e-1868.85Quinolinate synthase (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1XZZ1_9STRA2.160e-1772.13Quinolinate synthase (Fragment) n=1 Tax=Phaeomonas... [more]
K3X0N9_GLOUD3.630e-1767.21Quinolinate synthase n=1 Tax=Globisporangium ultim... [more]
A0A7R9U5L7_9STRA4.080e-1772.13Quinolinate synthase n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SV78_9STRA7.440e-1767.21Quinolinate synthase n=1 Tax=Rhizochromulina marin... [more]
A0A484EGS4_BRELC7.560e-1767.21Quinolinate synthase n=1 Tax=Bremia lactucae TaxID... [more]
A0A6G0WM88_9STRA1.030e-1665.57Quinolinate synthase n=1 Tax=Aphanomyces euteiches... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70467contigEcto-sp13_S_contig70467:445..639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.5
Seed ortholog evalue9e-24
Seed eggNOG ortholog2880.D7FHH3
Preferred nameQS
Model size195
KEGG rclassRC01119
KEGG koko:K03517
KEGG ReactionR04292
KEGG Pathwayko00760,ko01100,map00760,map01100
KEGG ModuleM00115
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006091,GO:0006139,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008047,GO:0008150,GO:0008152,GO:0008987,GO:0009058,GO:0009060,GO:0009066,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009507,GO:0009536,GO:0009893,GO:0009987,GO:0015980,GO:0016043,GO:0016053,GO:0016226,GO:0017144,GO:0018130,GO:0019222,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019752,GO:0019805,GO:0022607,GO:0030234,GO:0031163,GO:0031323,GO:0031325,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0042762,GO:0042802,GO:0042803,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046394,GO:0046483,GO:0046496,GO:0046874,GO:0046983,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051176,GO:0051186,GO:0051188,GO:0051536,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0098772,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Exons1
EggNOG free text desc.quinolinate synthetase A activity
EggNOG OGs2QPQ6@2759,COG0379@1
EC2.5.1.72
Cds size195
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.1589863-CDS-Ecto-sp13_S_contig70467:444..6391681463967.1589863-CDS-Ecto-sp13_S_contig70467:444..639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70467 445..639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70467.18112.1prot_Ecto-sp13_S_contig70467.18112.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70467 445..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70467.18112.1

>prot_Ecto-sp13_S_contig70467.18112.1 ID=prot_Ecto-sp13_S_contig70467.18112.1|Name=mRNA_Ecto-sp13_S_contig70467.18112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
QGALAALKWEHVSVADSLAMGDAAVRMAEAGVSSVACLGVDFMAESVRAT
LDSRGFQGVPVSQSA
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mRNA from alignment at Ecto-sp13_S_contig70467:445..639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70467.18112.1 ID=mRNA_Ecto-sp13_S_contig70467.18112.1|Name=mRNA_Ecto-sp13_S_contig70467.18112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70467:445..639- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCGCGCTGGCGGCCCTGAAGTGGGAGCACGTGTCCGTGGCCGACTC
GCTCGCGATGGGCGACGCGGCGGTGCGGATGGCTGAAGCGGGGGTCTCGA
GCGTGGCGTGCCTGGGGGTCGACTTCATGGCGGAGAGCGTGCGGGCGACG
CTGGACTCGAGGGGATTTCAGGGGGTGCCGGTGAGTCAATCAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70467:445..639-

>mRNA_Ecto-sp13_S_contig70467.18112.1 ID=mRNA_Ecto-sp13_S_contig70467.18112.1|Name=mRNA_Ecto-sp13_S_contig70467.18112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70467:445..639- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGCGCGCTGGCGGCCCTGAAGTGGGAGCACGTGTCCGTGGCCGACTC
GCTCGCGATGGGCGACGCGGCGGTGCGGATGGCTGAAGCGGGGGTCTCGA
GCGTGGCGTGCCTGGGGGTCGACTTCATGGCGGAGAGCGTGCGGGCGACG
CTGGACTCGAGGGGATTTCAGGGGGTGCCGGTGAGTCAATCAGCA
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