mRNA_Ecto-sp13_S_contig70442.18109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70442.18109.1
Unique NamemRNA_Ecto-sp13_S_contig70442.18109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: D8LJG3_ECTSI (Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJG3_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.960e-23
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   25 LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            +RHGESQWNLENRFTGWYNIQLS KGEIEAAEGGRLIHEAGYTF
Sbjct:   38 IRHGESQWNLENRFTGWYNIQLSSKGEIEAAEGGRLIHEAGYTF 81
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: W7TPX6_9STRA (Phosphoglycerate mutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPX6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-16
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LRVHAHGT----------LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            LR HA G           +RHGES+WN ENRFTGWY++QLS KG  EA EGGRL+ EAG+TF
Sbjct:   59 LRRHASGNSSKAAYRMVLVRHGESEWNKENRFTGWYDVQLSEKGIAEAKEGGRLLKEAGFTF 120
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A2H0MN47_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Fragment) n=1 Tax=Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_56_8 TaxID=1974049 RepID=A0A2H0MN47_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 5.960e-16
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    7 VHAHGTLRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            +H    LRHG+SQWNLENRFTGW ++ L+ +G  EA EGGRL+ EAGY F
Sbjct:    1 MHKLVLLRHGQSQWNLENRFTGWTDVDLTEQGIKEAREGGRLLREAGYVF 50
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A2V7Y7L1_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7Y7L1_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.340e-15
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   25 LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            LRHGES WNLENRFTGW ++ LSPKG  EA EG RL+ E GYTF
Sbjct:    7 LRHGESTWNLENRFTGWTDVDLSPKGLEEAREGARLLQEGGYTF 50
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A6A0ICL4_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6A0ICL4_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.370e-15
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   25 LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            LRHGESQWNLENRFTGW ++ LSPKG  EA E  RL+ E GYTF
Sbjct:    7 LRHGESQWNLENRFTGWTDVDLSPKGVEEAHEAARLLREGGYTF 50
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A7R9ZKT0_9STRA (Phosphoglycerate mutase (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKT0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.570e-15
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   25 LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            +RHGES WN EN+FTGWY+  LS KG  EA  GG L+HEAGYTF
Sbjct:   15 VRHGESTWNNENKFTGWYDCPLSEKGIEEAKAGGELLHEAGYTF 58
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A533U4I1_CHLSQ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Chlorobium sp. TaxID=1095 RepID=A0A533U4I1_CHLSQ)

HSP 1 Score: 75.1 bits (183), Expect = 4.580e-15
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   25 LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            LRHGESQWNLENRFTGWY+I LS +G  EAAE G+L+ ++G+ F
Sbjct:    7 LRHGESQWNLENRFTGWYDIDLSEQGRKEAAEAGKLLRDSGFAF 50
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A1C4CP36_9BACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Chitinophaga costaii TaxID=1335309 RepID=A0A1C4CP36_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 4.650e-15
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   25 LRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            LRHGES WN ENRFTGW ++ L+PKG+ EA + GRL+H+ GYTF
Sbjct:    7 LRHGESTWNQENRFTGWTDVDLTPKGQEEARQAGRLLHQGGYTF 50
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A382TLG7_9ZZZZ (Phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382TLG7_9ZZZZ)

HSP 1 Score: 70.5 bits (171), Expect = 4.860e-15
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 LRVHAHGTLRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            + +H    LRHGESQWNLENRFTGW N++L+  G +EA   G+++ + GY+F
Sbjct:    1 MSIHKLVLLRHGESQWNLENRFTGWTNVELTENGIVEAKSAGQILKDDGYSF 52
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BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Match: A0A7S0TE40_9STRA (Phosphoglycerate mutase n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TE40_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.770e-15
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 RVHAHGTL--RHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGYTF 156
            R +AH  L  RHGES WNLEN+FTGWY+I LSPKG  EA EGG+L+ EAG  F
Sbjct:   37 RRNAHTVLLMRHGESIWNLENKFTGWYDIALSPKGHEEAIEGGKLVKEAGLKF 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70442.18109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJG3_ECTSI2.960e-2395.45Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2... [more]
W7TPX6_9STRA2.820e-1659.68Phosphoglycerate mutase n=2 Tax=Monodopsidaceae Ta... [more]
A0A2H0MN47_9BACT5.960e-1662.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A2V7Y7L1_9BACT2.340e-1572.732,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A6A0ICL4_9BACT2.370e-1572.732,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A7R9ZKT0_9STRA3.570e-1568.18Phosphoglycerate mutase (Fragment) n=1 Tax=Crasped... [more]
A0A533U4I1_CHLSQ4.580e-1568.182,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A1C4CP36_9BACT4.650e-1565.912,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
A0A382TLG7_9ZZZZ4.860e-1551.92Phosphoglycerate mutase (2,3-diphosphoglycerate-de... [more]
A0A7S0TE40_9STRA5.770e-1566.04Phosphoglycerate mutase n=1 Tax=Chrysocystis fragi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70442contigEcto-sp13_S_contig70442:507..662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.7
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog2880.D8LJG3
Model size156
KEGG rclassRC00536
KEGG koko:K01834
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04922,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map04922,map05230
KEGG ModuleM00001,M00002,M00003
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC5.4.2.11
Cds size156
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463966.8313484-CDS-Ecto-sp13_S_contig70442:506..6621681463966.8313484-CDS-Ecto-sp13_S_contig70442:506..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70442 507..662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70442.18109.1prot_Ecto-sp13_S_contig70442.18109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70442 507..662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70442.18109.1

>prot_Ecto-sp13_S_contig70442.18109.1 ID=prot_Ecto-sp13_S_contig70442.18109.1|Name=mRNA_Ecto-sp13_S_contig70442.18109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
LRVHAHGTLRHGESQWNLENRFTGWYNIQLSPKGEIEAAEGGRLIHEAGY
TF
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mRNA from alignment at Ecto-sp13_S_contig70442:507..662-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70442.18109.1 ID=mRNA_Ecto-sp13_S_contig70442.18109.1|Name=mRNA_Ecto-sp13_S_contig70442.18109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70442:507..662- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCGTGTGCATGCACACGGCACTCTTAGGCACGGCGAATCGCAGTGGAA
CCTGGAGAACCGCTTCACCGGGTGGTACAACATCCAGCTGTCTCCAAAGG
GGGAGATAGAGGCGGCGGAAGGGGGCAGGCTCATCCACGAAGCAGGGTAC
ACTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70442:507..662-

>mRNA_Ecto-sp13_S_contig70442.18109.1 ID=mRNA_Ecto-sp13_S_contig70442.18109.1|Name=mRNA_Ecto-sp13_S_contig70442.18109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70442:507..662- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCGTGTGCATGCACACGGCACTCTTAGGCACGGCGAATCGCAGTGGAA
CCTGGAGAACCGCTTCACCGGGTGGTACAACATCCAGCTGTCTCCAAAGG
GGGAGATAGAGGCGGCGGAAGGGGGCAGGCTCATCCACGAAGCAGGGTAC
ACTTTC
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