mRNA_Ecto-sp13_S_contig7044.18108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7044.18108.1
Unique NamemRNA_Ecto-sp13_S_contig7044.18108.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.520e-18
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = -2 
Query:   21 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDM 158
            AHKTYNV+ERVRNKLEL EDGIF+EDV LPNVAALVAKE+GQG+DM
Sbjct:  181 AHKTYNVIERVRNKLELPEDGIFSEDVPLPNVAALVAKEVGQGDDM 226
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5L1S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.110e-14
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = -2 
Query:   18 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDMV 158
            A KTYN+VER R+KLEL+EDG+F+ DV LP VAA+VAK +GQG+D+V
Sbjct:   22 AQKTYNIVERFRSKLELAEDGVFSPDVSLPTVAAVVAKLVGQGDDLV 68
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.550e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = -2 
Query:    3 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDMVRC*PL 158
            AHKTYN+VER R+KLEL+EDG+F+ DV LP V+AL+AK IGQG+D+    PL
Sbjct:  485 AHKTYNIVERFRSKLELAEDGVFSNDVSLPTVSALLAKYIGQGDDLDALDPL 536
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5KTX0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.550e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = -2 
Query:    3 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDMVRC*PL 158
            AHKTYN+VER R+KLEL+EDG+F+ DV LP V+AL+AK IGQG+D+    PL
Sbjct:  568 AHKTYNIVERFRSKLELAEDGVFSNDVSLPTVSALLAKYIGQGDDLDALDPL 619
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5JRY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.590e-13
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:   21 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDM 158
            AHKTYNVVER R+K EL+EDG+F+EDV LP VAAL+ K +GQG+D+
Sbjct:  198 AHKTYNVVERFRSKFELAEDGVFSEDVSLPTVAALLDKLVGQGDDL 243
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5KX52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX52_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.570e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:   21 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDM 158
            AHKTYNVVER R+K EL+EDG+F+EDV LP VAAL+ + +GQG+D+
Sbjct:  460 AHKTYNVVERFRSKFELAEDGVFSEDVSLPTVAALLDQVVGQGDDL 505
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5JJR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:   21 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDM 158
            AHKTYN+VER R+KLE++EDG+F+ DV LP VAA VA+ +GQG+D+
Sbjct:  684 AHKTYNIVERFRSKLEVAEDGVFSTDVSLPTVAAFVARLVGQGDDL 729
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5JCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.580e-12
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:   21 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDM 158
            A KTYN+VER R+KLEL+EDG+F+ DV LP VAA+VAK +GQG+D+
Sbjct:  175 AQKTYNIVERFRSKLELAEDGVFSPDVSLPTVAAVVAKLVGQGDDL 220
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BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Match: A0A6H5KL31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL31_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.280e-11
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = -2 
Query:   21 AHKTYNVVERVRNKLELSEDGIFTEDVLLPNVAALVAKEIGQGNDM 158
            AHKTY++VER R+K EL++DG+F+ED+ LP VAAL+ K +GQG+D+
Sbjct:  373 AHKTYHIVERFRSKFELADDGVFSEDISLPTVAALLDKLVGQGDDL 418
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7044.18108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JZH8_9PHAE7.520e-1886.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1S5_9PHAE5.110e-1468.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE1.550e-1365.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTX0_9PHAE1.550e-1365.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY7_9PHAE8.590e-1369.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX52_9PHAE2.570e-1267.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR7_9PHAE3.510e-1265.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCP4_9PHAE4.580e-1267.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL31_9PHAE2.280e-1160.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7044contigEcto-sp13_S_contig7044:1014..1175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_003510.1
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463966.7889142-UTR-Ecto-sp13_S_contig7044:1013..10341681463966.7889142-UTR-Ecto-sp13_S_contig7044:1013..1034Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7044 1014..1034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463966.800902-CDS-Ecto-sp13_S_contig7044:1034..11751681463966.800902-CDS-Ecto-sp13_S_contig7044:1034..1175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7044 1035..1175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7044.18108.1prot_Ecto-sp13_S_contig7044.18108.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7044 1035..1175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7044.18108.1

>prot_Ecto-sp13_S_contig7044.18108.1 ID=prot_Ecto-sp13_S_contig7044.18108.1|Name=mRNA_Ecto-sp13_S_contig7044.18108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MSLPWPISLATSAATLGSSTSSVKIPSSDSSSLLRTRSTTLYVLCA*
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mRNA from alignment at Ecto-sp13_S_contig7044:1014..1175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7044.18108.1 ID=mRNA_Ecto-sp13_S_contig7044.18108.1|Name=mRNA_Ecto-sp13_S_contig7044.18108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7044:1014..1175+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAACGGTCAACAGCGTACCATGTCATTGCCTTGGCCGATCTCTTTGGC
GACAAGTGCAGCGACGTTGGGCAGCAGCACGTCCTCCGTGAAGATTCCAT
CCTCGGACAGCTCGAGCTTGTTGCGGACTCGTTCAACAACGTTGTACGTC
TTGTGCGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7044:1014..1175+

>mRNA_Ecto-sp13_S_contig7044.18108.1 ID=mRNA_Ecto-sp13_S_contig7044.18108.1|Name=mRNA_Ecto-sp13_S_contig7044.18108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7044:1014..1175+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATTGCCTTGGCCGATCTCTTTGGCGACAAGTGCAGCGACGTTGGG
CAGCAGCACGTCCTCCGTGAAGATTCCATCCTCGGACAGCTCGAGCTTGT
TGCGGACTCGTTCAACAACGTTGTACGTCTTGTGCGCCTGA
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