mRNA_Ecto-sp13_S_contig7043.18106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7043.18106.1
Unique NamemRNA_Ecto-sp13_S_contig7043.18106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7043.18106.1 vs. uniprot
Match: Q8QNB8_ESV1K (EsV-1-167 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB8_ESV1K)

HSP 1 Score: 474 bits (1221), Expect = 4.880e-168
Identity = 235/273 (86.08%), Postives = 250/273 (91.58%), Query Frame = 1 
Query:    1 MQPEAFCAVGCPPQKLCPVADDNLGCVIGTERLHNPGQPRCCEVDNADIYLKTVRDILAYLNAPPNAPQNTANFRQALGTMLQRLNIGPGPSMFSNDILFIDNSSNQAPDANFTPGQTDDLLKLLAMSNERTQVELFASDISRQPRERREDKFDFYIEDPPENVPDLLCRADRMFVFFNNAEAHRMVSLILHVLEGDNFAECGFFVGAYGAPVTRVSRNLVRNIKRAMHTTTFKGRIRMDGNNLLEDNVEIGTDVVAAGKTIITTATTLDVII 819
            MQPEAFCAVGCPPQKLCPVAD+NLGCVIGTERLHNPGQPRCCEVDNADIYLKTVRDILAYLN P N  QNTANFRQALG MLQRLNIG GPSMFSND LFIDNSSNQAPDANFTP QTDDLLKLL  SNERTQV+LF  DI RQP ERREDKFDFYIEDPPENVPDLLC ADRMFVFF+NAEAHRMVSL++HVLEGD+FAE GF+VGAYGAPV+RV+RNL+R I+RAMHTTTF G IR++G+NLL DNVEIGTDVVA GKTI+T A TLDVII
Sbjct:    1 MQPEAFCAVGCPPQKLCPVADNNLGCVIGTERLHNPGQPRCCEVDNADIYLKTVRDILAYLNTPQNDHQNTANFRQALGIMLQRLNIGAGPSMFSNDTLFIDNSSNQAPDANFTPSQTDDLLKLLEKSNERTQVDLFVHDIVRQPIERREDKFDFYIEDPPENVPDLLCLADRMFVFFSNAEAHRMVSLVVHVLEGDSFAESGFYVGAYGAPVSRVTRNLIRYIRRAMHTTTFTGSIRLEGDNLLADNVEIGTDVVAPGKTIVTAARTLDVII 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7043.18106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNB8_ESV1K4.880e-16886.08EsV-1-167 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7043contigEcto-sp13_S_contig7043:5993..6817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size825
Hectar predicted targeting categoryother localisation
Exons1
Cds size825
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463966.7188861-CDS-Ecto-sp13_S_contig7043:5992..68171681463966.7188861-CDS-Ecto-sp13_S_contig7043:5992..6817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7043 5993..6817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7043.18106.1prot_Ecto-sp13_S_contig7043.18106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7043 5993..6817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7043.18106.1

>prot_Ecto-sp13_S_contig7043.18106.1 ID=prot_Ecto-sp13_S_contig7043.18106.1|Name=mRNA_Ecto-sp13_S_contig7043.18106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MQPEAFCAVGCPPQKLCPVADDNLGCVIGTERLHNPGQPRCCEVDNADIY
LKTVRDILAYLNAPPNAPQNTANFRQALGTMLQRLNIGPGPSMFSNDILF
IDNSSNQAPDANFTPGQTDDLLKLLAMSNERTQVELFASDISRQPRERRE
DKFDFYIEDPPENVPDLLCRADRMFVFFNNAEAHRMVSLILHVLEGDNFA
ECGFFVGAYGAPVTRVSRNLVRNIKRAMHTTTFKGRIRMDGNNLLEDNVE
IGTDVVAAGKTIITTATTLDVIIT*
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mRNA from alignment at Ecto-sp13_S_contig7043:5993..6817-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7043.18106.1 ID=mRNA_Ecto-sp13_S_contig7043.18106.1|Name=mRNA_Ecto-sp13_S_contig7043.18106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:5993..6817- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCCGAAGCGTTTTGCGCCGTCGGCTGTCCTCCGCAAAAACTATG
CCCCGTGGCCGACGACAATCTCGGCTGTGTTATCGGCACAGAAAGACTAC
ACAACCCGGGGCAACCCCGTTGCTGCGAGGTGGACAATGCTGACATCTAC
CTCAAGACCGTGCGCGACATTTTGGCATACCTCAATGCACCTCCAAATGC
TCCCCAAAACACAGCCAACTTTCGACAGGCGCTGGGTACCATGCTCCAGA
GGTTGAACATCGGCCCAGGCCCGTCCATGTTTTCCAACGACATACTCTTC
ATCGATAATTCCAGCAACCAAGCGCCCGATGCCAATTTCACCCCGGGTCA
GACCGACGACCTCTTGAAGTTGCTCGCAATGTCAAACGAGAGGACTCAGG
TGGAGTTGTTCGCCAGTGACATCTCGCGGCAGCCGAGAGAGCGTCGTGAA
GATAAGTTCGATTTCTATATTGAAGACCCCCCCGAGAACGTCCCTGACCT
ACTTTGTCGTGCCGATAGGATGTTTGTCTTTTTCAACAATGCCGAAGCAC
ATCGAATGGTTTCACTCATACTCCATGTACTCGAAGGAGACAACTTCGCC
GAATGTGGATTTTTCGTGGGGGCTTATGGAGCCCCCGTAACACGTGTGAG
CCGAAATCTAGTCCGGAACATCAAGCGCGCCATGCATACAACCACATTCA
AAGGAAGAATACGGATGGATGGAAACAACCTGTTAGAAGACAATGTCGAA
ATAGGAACGGATGTGGTGGCCGCAGGAAAAACGATTATAACAACGGCCAC
GACGCTAGATGTGATAATCACGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7043:5993..6817-

>mRNA_Ecto-sp13_S_contig7043.18106.1 ID=mRNA_Ecto-sp13_S_contig7043.18106.1|Name=mRNA_Ecto-sp13_S_contig7043.18106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:5993..6817- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACCCGAAGCGTTTTGCGCCGTCGGCTGTCCTCCGCAAAAACTATG
CCCCGTGGCCGACGACAATCTCGGCTGTGTTATCGGCACAGAAAGACTAC
ACAACCCGGGGCAACCCCGTTGCTGCGAGGTGGACAATGCTGACATCTAC
CTCAAGACCGTGCGCGACATTTTGGCATACCTCAATGCACCTCCAAATGC
TCCCCAAAACACAGCCAACTTTCGACAGGCGCTGGGTACCATGCTCCAGA
GGTTGAACATCGGCCCAGGCCCGTCCATGTTTTCCAACGACATACTCTTC
ATCGATAATTCCAGCAACCAAGCGCCCGATGCCAATTTCACCCCGGGTCA
GACCGACGACCTCTTGAAGTTGCTCGCAATGTCAAACGAGAGGACTCAGG
TGGAGTTGTTCGCCAGTGACATCTCGCGGCAGCCGAGAGAGCGTCGTGAA
GATAAGTTCGATTTCTATATTGAAGACCCCCCCGAGAACGTCCCTGACCT
ACTTTGTCGTGCCGATAGGATGTTTGTCTTTTTCAACAATGCCGAAGCAC
ATCGAATGGTTTCACTCATACTCCATGTACTCGAAGGAGACAACTTCGCC
GAATGTGGATTTTTCGTGGGGGCTTATGGAGCCCCCGTAACACGTGTGAG
CCGAAATCTAGTCCGGAACATCAAGCGCGCCATGCATACAACCACATTCA
AAGGAAGAATACGGATGGATGGAAACAACCTGTTAGAAGACAATGTCGAA
ATAGGAACGGATGTGGTGGCCGCAGGAAAAACGATTATAACAACGGCCAC
GACGCTAGATGTGATAATCACGTAA
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