mRNA_Ecto-sp13_S_contig7043.18104.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7043.18104.1
Unique NamemRNA_Ecto-sp13_S_contig7043.18104.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7043.18104.1 vs. uniprot
Match: Q8QNB9_ESV1K (EsV-1-165 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB9_ESV1K)

HSP 1 Score: 188 bits (477), Expect = 3.410e-60
Identity = 93/104 (89.42%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:    1 MDWICCLRKK-RMRAAYDALRQEPESPAEEHKPAQYISASLDSEYDLENFHLRKTLTSLYKKVSEWSLPKERKMNLFTVNEEEHDFLMNDIEADNFDDVVDEKI 309
            MDWICCLRKK R+R AYDALR++PESP+EEH+PAQYISASLDSEYDLENFHL++TLTSLYKKVSEWSLPK+RKMNLFTVNEEEHDFLMNDIE DNFDDVVDEKI
Sbjct:    1 MDWICCLRKKKRLREAYDALRKDPESPSEEHEPAQYISASLDSEYDLENFHLKRTLTSLYKKVSEWSLPKKRKMNLFTVNEEEHDFLMNDIEVDNFDDVVDEKI 104
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BLAST of mRNA_Ecto-sp13_S_contig7043.18104.1 vs. uniprot
Match: D8LPI4_ECTSI (EsV-1-165 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI4_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.920e-53
Identity = 91/107 (85.05%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:    1 MDWICCLR-KKRMRAAYDALR--QEPESPAEEHKPAQYISASLDSEYDLENFHLRKTLTSLYKKVSEWSLPKE-RKMNLFTVNEEEHDFLMNDIEADNFDDVVDEKI 309
            M WICCLR KKR+R AYDALR  +E ESPAE+H+PAQY+SASLDSEYDLENFHL+ TLTSLYKKVSEWSLPK+ RKMNLFTVNEEEHDFLMNDIEAD FDDVVDEKI
Sbjct:    1 MTWICCLRNKKRLREAYDALRHERESESPAEDHEPAQYVSASLDSEYDLENFHLKNTLTSLYKKVSEWSLPKQKRKMNLFTVNEEEHDFLMNDIEADIFDDVVDEKI 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7043.18104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNB9_ESV1K3.410e-6089.42EsV-1-165 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPI4_ECTSI1.920e-5385.05EsV-1-165 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7043contigEcto-sp13_S_contig7043:4483..4794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-165
Ec32 orthologEc-06_005270.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463966.6338592-CDS-Ecto-sp13_S_contig7043:4482..47941681463966.6338592-CDS-Ecto-sp13_S_contig7043:4482..4794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7043 4483..4794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7043.18104.1prot_Ecto-sp13_S_contig7043.18104.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7043 4483..4794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7043.18104.1

>prot_Ecto-sp13_S_contig7043.18104.1 ID=prot_Ecto-sp13_S_contig7043.18104.1|Name=mRNA_Ecto-sp13_S_contig7043.18104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MDWICCLRKKRMRAAYDALRQEPESPAEEHKPAQYISASLDSEYDLENFH
LRKTLTSLYKKVSEWSLPKERKMNLFTVNEEEHDFLMNDIEADNFDDVVD
EKI*
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mRNA from alignment at Ecto-sp13_S_contig7043:4483..4794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7043.18104.1 ID=mRNA_Ecto-sp13_S_contig7043.18104.1|Name=mRNA_Ecto-sp13_S_contig7043.18104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:4483..4794- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGGATCTGTTGCCTTCGTAAAAAGAGAATGCGAGCGGCGTACGA
TGCACTCAGACAAGAACCCGAATCCCCCGCCGAAGAACACAAGCCCGCAC
AGTACATAAGCGCGAGCCTCGACTCAGAGTACGACCTCGAGAACTTTCAT
CTCAGGAAAACCCTCACCAGCCTGTACAAAAAGGTGTCGGAGTGGTCTCT
GCCAAAAGAACGAAAGATGAACCTGTTCACGGTGAACGAGGAGGAGCACG
ACTTTTTAATGAACGATATCGAGGCAGACAACTTTGACGACGTTGTCGAC
GAAAAGATTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7043:4483..4794-

>mRNA_Ecto-sp13_S_contig7043.18104.1 ID=mRNA_Ecto-sp13_S_contig7043.18104.1|Name=mRNA_Ecto-sp13_S_contig7043.18104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:4483..4794- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACTGGATCTGTTGCCTTCGTAAAAAGAGAATGCGAGCGGCGTACGA
TGCACTCAGACAAGAACCCGAATCCCCCGCCGAAGAACACAAGCCCGCAC
AGTACATAAGCGCGAGCCTCGACTCAGAGTACGACCTCGAGAACTTTCAT
CTCAGGAAAACCCTCACCAGCCTGTACAAAAAGGTGTCGGAGTGGTCTCT
GCCAAAAGAACGAAAGATGAACCTGTTCACGGTGAACGAGGAGGAGCACG
ACTTTTTAATGAACGATATCGAGGCAGACAACTTTGACGACGTTGTCGAC
GAAAAGATTTAA
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