mRNA_Ecto-sp13_S_contig70406.18097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70406.18097.1
Unique NamemRNA_Ecto-sp13_S_contig70406.18097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: D8LBC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 4.790e-27
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1
Query:   82 QGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAK 243
            +GDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAK
Sbjct:  154 KGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAK 207          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.270e-14
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   82 QGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAK 243
            +G TD+  L++D+G+ +E FDMGDAFVG WD+ANLVSDF++ +MG E + CS K
Sbjct:   65 RGTTDLNQLIMDVGTTLESFDMGDAFVGGWDVANLVSDFMLARMGLERACCSTK 118          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A7S2B2L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2L4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.030e-11
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   94 DMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCS 237
            D+T++++ +G  ME+ DMGDAFVG WD+AN  SD LM +MG ET  C+
Sbjct:   26 DLTSVMMYLGEVMEKTDMGDAFVGPWDVANACSDLLMARMGRETCDCA 73          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A7S2UZ53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ53_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.070e-9
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   82 QGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGA-ETSGCSA 240
            +G T +  +V+ +G A+E+ DMGDA+VGAWD+ANL SDFLM+++   E  GCSA
Sbjct:   99 EGKTQIMDVVVAVGEALEKVDMGDAYVGAWDVANLCSDFLMQRLDDHEPIGCSA 152          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A7S2TY21_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY21_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 8.690e-7
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   82 QGDTDMTTLVLDMGSAM---EQFDMGDAFVGAWDIANLVSDFLMEKM-GAETSGCS 237
            +G  D+T +VL++G  +   +QFDMGDAFVG WD+AN+V D L+ ++ G + + C+
Sbjct:  143 EGINDVTLMVLEIGGFLSDPKQFDMGDAFVGGWDVANMVGDLLIARIAGPDGADCA 198          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A7S0J4D2_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J4D2_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 9.790e-7
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   31 VRRHRHVSSARGGITEWQG-----DTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMG 216
            + +  HV++A+     ++G       ++  L++ +G A+EQ D+GD FVG WDIAN+ SD L E  G
Sbjct:  115 IEQDDHVAAAQAAAAAYEGCRAAGRDEIAQLMIAIGGALEQTDLGDCFVGPWDIANMASDILFEVNG 181          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A7S0PXV0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PXV0_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 3.960e-6
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   46 HVSSARGGITEWQ-----GDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFL 201
            H+  AR   T ++     G  ++  L++ +G A+EQ DMGD FVG WDIAN+ SD L
Sbjct:  107 HLLVARAAATAYEECRATGRDEIAQLMVAIGGALEQMDMGDCFVGPWDIANMASDIL 163          
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Match: A0A7S4DMC2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DMC2_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 4.550e-6
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   73 TEWQGD--TDMTTLVLDMGSAMEQ---FDMGDAFVGAWDIANLVSDFLMEKM-GAETSGCS 237
            T+++GD   D+T +VL++G  +     FDMGDAFVG WD+AN+V D L+ ++ G + + C+
Sbjct:  139 TKFRGDGVDDVTLMVLEIGGFLSDPKLFDMGDAFVGGWDVANMVGDLLIARIAGPDGADCA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70406.18097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LBC0_ECTSI4.790e-2798.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1S2_9STRA2.270e-1457.411,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2B2L4_9STRA7.030e-1154.17Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2UZ53_9STRA1.070e-953.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2TY21_9EUKA8.690e-744.64Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0J4D2_9EUKA9.790e-737.31Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0PXV0_9EUKA3.960e-643.86Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4DMC2_9EUKA4.550e-642.62Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70406contigEcto-sp13_S_contig70406:335..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.2
Seed ortholog evalue4.7e-22
Seed eggNOG ortholog2880.D8LBC0
Model size243
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CZVC@1,2SBU5@2759
Cds size243
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.9772608-CDS-Ecto-sp13_S_contig70406:334..5771681463965.9772608-CDS-Ecto-sp13_S_contig70406:334..577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70406 335..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70406.18097.1prot_Ecto-sp13_S_contig70406.18097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70406 335..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70406.18097.1

>prot_Ecto-sp13_S_contig70406.18097.1 ID=prot_Ecto-sp13_S_contig70406.18097.1|Name=mRNA_Ecto-sp13_S_contig70406.18097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
QFLPPSLSGVVRRHRHVSSARGGITEWQGDTDMTTLVLDMGSAMEQFDMG
DAFVGAWDIANLVSDFLMEKMGAETSGCSAK
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mRNA from alignment at Ecto-sp13_S_contig70406:335..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70406.18097.1 ID=mRNA_Ecto-sp13_S_contig70406.18097.1|Name=mRNA_Ecto-sp13_S_contig70406.18097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70406:335..577+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTCTCCCTCCCTCCCTCTCTGGCGTTGTCCGTCGTCATCGACACGT TTCTTCCGCACGCGGCGGTATTACTGAATGGCAGGGCGACACTGACATGA CCACCCTGGTGCTAGACATGGGGTCAGCGATGGAGCAGTTCGACATGGGG GACGCGTTCGTTGGGGCGTGGGACATCGCCAACCTTGTGTCGGACTTCCT GATGGAGAAGATGGGAGCGGAGACGAGCGGCTGTAGCGCCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70406:335..577+

>mRNA_Ecto-sp13_S_contig70406.18097.1 ID=mRNA_Ecto-sp13_S_contig70406.18097.1|Name=mRNA_Ecto-sp13_S_contig70406.18097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70406:335..577+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTCTCCCTCCCTCCCTCTCTGGCGTTGTCCGTCGTCATCGACACGT
TTCTTCCGCACGCGGCGGTATTACTGAATGGCAGGGCGACACTGACATGA
CCACCCTGGTGCTAGACATGGGGTCAGCGATGGAGCAGTTCGACATGGGG
GACGCGTTCGTTGGGGCGTGGGACATCGCCAACCTTGTGTCGGACTTCCT
GATGGAGAAGATGGGAGCGGAGACGAGCGGCTGTAGCGCCAAG
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