mRNA_Ecto-sp13_S_contig704.18091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig704.18091.1
Unique NamemRNA_Ecto-sp13_S_contig704.18091.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig704.18091.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.980e-33
Identity = 72/88 (81.82%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MPQRPNMPDCHGFVKNGCCRFLHNCRYHHPYDRLGMPPQDSAXXXXXXXXXXXXXXXXXXXXXXSGVDAIIGVQDRAPCDMFLNVSFC 264
            MPQRPNMP+CHGFVKNGCCRFLHNCRYHHPYDRLGM  QDSA XXXXXXXXXXXX         SGVDAIIGVQDRAPCDMFLN   C
Sbjct:  181 MPQRPNMPECHGFVKNGCCRFLHNCRYHHPYDRLGMATQDSAGXXXXXXXXXXXXSHENVGGG-SGVDAIIGVQDRAPCDMFLNSGHC 267
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BLAST of mRNA_Ecto-sp13_S_contig704.18091.1 vs. uniprot
Match: A0A1S2YQD3_CICAR (zinc finger CCCH domain-containing protein 34 n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YQD3_CICAR)

HSP 1 Score: 50.1 bits (118), Expect = 5.000e-5
Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 MPQRPNMPDCHGFVKNGCCRFLHNCRYHHPYDRLGMP 111
            +P+RP+ P+CH ++K G C+F  +CRYHHP D  G P
Sbjct:  296 LPERPDQPECHHYMKTGECKFGSSCRYHHPPD-TGAP 331
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BLAST of mRNA_Ecto-sp13_S_contig704.18091.1 vs. uniprot
Match: A0A251PCN7_PRUPE (C3H1-type domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=A0A251PCN7_PRUPE)

HSP 1 Score: 46.6 bits (109), Expect = 9.930e-5
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:    1 MPQRPNMPDCHGFVKNGCCRFLHNCRYHHPYDRLGMPP 114
            +P+RP  P C  F + G C+F+ NC+YHHP ++  + P
Sbjct:   31 LPERPGQPACIYFSRTGDCKFISNCKYHHPKNQTALFP 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig704.18091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9M4_9PHAE2.980e-3381.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S2YQD3_CICAR5.000e-551.35zinc finger CCCH domain-containing protein 34 n=1 ... [more]
A0A251PCN7_PRUPE9.930e-542.11C3H1-type domain-containing protein n=1 Tax=Prunus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig704contigEcto-sp13_S_contig704:1336..2722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-13_001300.1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.716424-CDS-Ecto-sp13_S_contig704:1335..15281681463965.716424-CDS-Ecto-sp13_S_contig704:1335..1528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 1336..1528 -
1681463965.7271981-CDS-Ecto-sp13_S_contig704:2645..27221681463965.7271981-CDS-Ecto-sp13_S_contig704:2645..2722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 2646..2722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig704.18091.1prot_Ecto-sp13_S_contig704.18091.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig704 1336..2722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig704.18091.1

>prot_Ecto-sp13_S_contig704.18091.1 ID=prot_Ecto-sp13_S_contig704.18091.1|Name=mRNA_Ecto-sp13_S_contig704.18091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MPQRPNMPDCHGFVKNGCCRFLHNCRYHHPYDRLGMPPQDSAGGGGGGGG
TQRGPSSHENGGGGSGVDAIIGVQDRAPCDMFLNVSFCF*
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mRNA from alignment at Ecto-sp13_S_contig704:1336..2722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig704.18091.1 ID=mRNA_Ecto-sp13_S_contig704.18091.1|Name=mRNA_Ecto-sp13_S_contig704.18091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:1336..2722- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCAGAGGCCGAACATGCCGGACTGCCACGGCTTCGTGAAGAACGG
GTGCTGCCGTTTCCTACACAACTGCAGGTGCTTTTGCTTTCGTGCCTGCG
TCACGTTGTCTTAGAAAGGGATTAACACGCGTGTGTGTGTGTGTGTGTGT
GTGTGTGCGTGTCTTTTCTGTGTTTGCATCAACCGTGCGAGGCGGTTGAC
CAACGAAAAGACGCCTCTTTTTTATTTGCATCAATACGGCGCTTTCCGGC
TAACCAAGGAGAGAAGGGCTCGTAAGTGTTTTGCGTCAATCGCGCTACCC
GGCGGACATACGAATAGACGTCAATCTCAGCGCCGCTGAAAACAGAAAAT
GCCTTCAAAGGCCATGATCTGGAATCCGTGAGGGGTCGTCATGCGAGAGG
CTCTACTTCTTCAGTTATCGCGCAGATGTGGAAGACAATCCAACCACGGC
CAGAGGAGCCAAAGTCTTCACTGATGATGCCTCTTTTTCCGGCTAATTTG
TGCGATTTTGATGGAGAGGCCATATTTTACCTTGACAAAAGCAGTCATGA
TGCAGACGTATGTTTTTTCCAAGTCGTTAACGACGGAGGCTGTTCAGAGC
AGTACGCACATGCCGCATATGACCCAAGATAACATACACTGTGGGCCGAT
TTTCAAAGCTCGATTTCTCCACGACGAAAAGGACGAAAAACGAATCGATA
CGTTCCGGAGAGCACTCGACCAGACGACTTCAACGCCGATGTTTTCGGCC
ATGCCACCTTGCCGCTGATGGAAAATCGAGCTTCGAAAATGGGTCCAGGG
GGTGTCTTATCCCGTGTCGTATACGGACGCATCGGTTATACCAACGTGTG
GGCGCTGACAGCGTATACGCACATGCGTTCATCGCACGCATGGGTTGATC
TTTTTTTCGGTTGGCAGCGTATACGCACATGCGTTCATCGCACGCATGGG
TTGATCTTTTTTTCGGTTGGATAACAAATCGCGGCTTCGGAGAAATTTTC
TGATGTCCCTGTTTTTTTCTTCGTTTTTTTGGTAAGTTGTTCCCGCCTTG
GGGGGCAGTTGGCTTGCGACCACGGAAAGCGTCCGCGTCAGTTGCACCAG
AACGGACATTAGAAGGTGCTGAGTGGAGACCGGAACGCTTTTAAATATGA
AGACAGCAACAACAAAAACAATACCCGTGGTCAACTGTCCCCAGGTACCA
CCACCCTTACGACCGACTCGGAATGCCCCCCCAAGACTCCGCGGGCGGCG
GCGGCGGCGGCGGCGGCACGCAGAGGGGACCATCCTCACACGAAAACGGA
GGCGGGGGCAGCGGGGTGGATGCGATCATCGGCGTGCAGGACCGAGCACC
TTGCGACATGTTTCTGAACGTGAGTTTTTGCTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig704:1336..2722-

>mRNA_Ecto-sp13_S_contig704.18091.1 ID=mRNA_Ecto-sp13_S_contig704.18091.1|Name=mRNA_Ecto-sp13_S_contig704.18091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:1336..2722- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCAGAGGCCGAACATGCCGGACTGCCACGGCTTCGTGAAGAACGG
GTGCTGCCGTTTCCTACACAACTGCAGGTACCACCACCCTTACGACCGAC
TCGGAATGCCCCCCCAAGACTCCGCGGGCGGCGGCGGCGGCGGCGGCGGC
ACGCAGAGGGGACCATCCTCACACGAAAACGGAGGCGGGGGCAGCGGGGT
GGATGCGATCATCGGCGTGCAGGACCGAGCACCTTGCGACATGTTTCTGA
ACGTGAGTTTTTGCTTCTGA
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