mRNA_Ecto-sp13_S_contig704.18094.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig704.18094.1
Unique NamemRNA_Ecto-sp13_S_contig704.18094.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig704.18094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig704contigEcto-sp13_S_contig704:12706..14858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size284
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001260.1
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.6704226-CDS-Ecto-sp13_S_contig704:12705..128061681463965.6704226-CDS-Ecto-sp13_S_contig704:12705..12806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 12706..12806 +
1681463965.686427-CDS-Ecto-sp13_S_contig704:14677..148581681463965.686427-CDS-Ecto-sp13_S_contig704:14677..14858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 14678..14858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig704.18094.1prot_Ecto-sp13_S_contig704.18094.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig704 12706..14858 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig704.18094.1

>prot_Ecto-sp13_S_contig704.18094.1 ID=prot_Ecto-sp13_S_contig704.18094.1|Name=mRNA_Ecto-sp13_S_contig704.18094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
AHRSKQHPVWCCLSPTTPSIRVKPTPRAGSSTDRWCLVLLQGGSPPLPPS
SQEYDSRGGRKSSSEGGEDKKSNRSGGARASSSSRRNGAVRVSC
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mRNA from alignment at Ecto-sp13_S_contig704:12706..14858+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig704.18094.1 ID=mRNA_Ecto-sp13_S_contig704.18094.1|Name=mRNA_Ecto-sp13_S_contig704.18094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:12706..14858+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCACCGCTCCAAACAACATCCTGTCTGGTGTTGTCTGTCTCCTACAAC
ACCAAGCATTAGAGTGAAGCCAACACCGAGGGCTGGAAGTTCTACCGACA
GGTGAGTGAAAACGATGTCCGCGAAAAAGCGAGCGTAGTTTGACTGTCGT
GTGAGATGGACAGCTGACATACTCCCTGCTGCGAGGCTCACACGGCCTGT
TACAGCGGTCGATGCGAAGTACTACATGATAGTGCCGAAGGACACACACA
GCGGTTGTGTGTGCGTTGCAATAATGGATCCACACACACCAACATGGGCA
GCGGCACCTGATAGTGTGGTCTCTCTCCAAGCTTGTATGTAGTCGACTAG
CTGCGGAGTCGGTCAACATAGTCCAAAACAGTGGAACGTGGAGAACTAGT
GCTGTGCGCTGCTTTGCTTTTGCGGTGGCATTCGCACGCACGGCGTGTGT
CCAGAGCAACCCCTCCCTTTGCGTACATAGGTAAGCGTTGCTCCTGCACA
AACGAGGCGGAGCTCGGGACTACGATTGTACTGTCGGTACTGTACACAAC
AAGCGCACCCCTTCCAATGCCTAAAGAACAGCGTACGTATGGTCGCCTTT
TTGTCAAAGATGGTCATCGGTGCCCTCGTGCACAGCGCCATGTGGCAACA
GGTTTTGTTGTTGCACTTCCCAGCACAGCAGCAGTTGTCCATGCACCGGA
GGGAGGAGCTATGGTTGTGCACTGCTGGCCGCATGGTCACGTGTGTGGGA
GTACACGGGGTGGTCGTCGAGAGCGATCCCAGATTCTCTCCCCGCCACAG
CAGCGGTGTACTCCATGCGAACTCTCCATGTCGGGGTACATGTATTGTAG
GTTGCCGCCATGACGACAGGTGCAGTGATCGGCAACACTACTTGCCTGCA
CGTCGTGTAGTATTGGTGAACGGTACACTCGGGAGAGGTACGGAGTGACT
AAATCTTGCCAAACATTGAAAAGGCGGGCACATGCCCACACCGTCCGAGC
CCCGCCTGGACATAGGTGGATGCAACATCACACACGTCTCGTCTGCCCTC
ACGACACTACGGGAGTTGTCTCAGCTCAACTCGCCACACATGCCTTCAAA
CTCGAAATCGAGTACCCAGCCGGTTTTCCTCCGCTTACTGAAAAGACTCC
CAACACATCCCATTCGACTGCTATGGTTATACCTCGAATGGGAGTCTTTC
TGTGTGCGTCTTTATTTTTCCTAAGAATTGAATAGATACCCGCGCGGGCA
AATGCCCACGTCCCCAGGCTCTGTGTATCGCCTCCCTGTCGCATACTACA
TGTAGGAGCCGAGCGCACAACAAGCCGTTCAAGCACGCGGGTGTTTTTTT
CGCCTTCGGGCCATCTAGACGGAGCTACGGCGGTAGACTCGCCTTATTTT
GGCAAAGACTTGGGTTCTTGGTTATTACAAGTAGGGTCGTGCCACAGATG
GCCGCGGTATTGGTTATACAATTGTAAGAGGTTCGTAGGGGCTCACGATA
AATGGTGCTCAAGTGCTTACGTTATTTTTTACTTCTCCGACGCCCGAAGT
CTTAACCACCAAATTCTTAAGTGGGGGCGCTGACTGTATTGCAGTACCGG
TAGCAGAAGCAGCGAGCAGGAGGAGAGCACAACTACGGGGTATCCACCGT
CGTTTCTCCATCGACCCTTTGCTACTGCTGCTGCTGCTGCTGCTGCTGAC
ACCCTTCTCATCCCCCTCCCTCCCCACGCCCTACGCGGCCCGTTGGCCGA
AGAAGAACGATCGGGAAAAGGTTGTGTCTCGTACCGCCATCTTGACGGGA
CTTAAGCAGTAATCTGTGACAGGCAGAAGTAGCAGCAACATTAAGCGAGC
GTGTAGCGACCGCCGGTTTTGGTCTTCTTTTTTTTGCTGCTGCTGCTGAC
ATCCTTCCCACCCCACCACCCCCCCACGCCTTGTACAATCCCCCTGAACT
CCGAAAACCCGATCGCGAATAGGTGGTGTCTCGTGCTGCTGCAGGGAGGA
AGCCCTCCCCTTCCCCCCAGCTCTCAGGAGTATGACTCGAGGGGTGGCAG
GAAGAGCAGCAGCGAGGGAGGGGAGGACAAGAAGTCGAACCGGAGCGGCG
GTGCCAGGGCGAGCAGCAGTAGCCGCAGGAACGGAGCGGTCAGGGTTAGC
TGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig704:12706..14858+

>mRNA_Ecto-sp13_S_contig704.18094.1 ID=mRNA_Ecto-sp13_S_contig704.18094.1|Name=mRNA_Ecto-sp13_S_contig704.18094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:12706..14858+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCACCGCTCCAAACAACATCCTGTCTGGTGTTGTCTGTCTCCTACAAC
ACCAAGCATTAGAGTGAAGCCAACACCGAGGGCTGGAAGTTCTACCGACA
GGTGGTGTCTCGTGCTGCTGCAGGGAGGAAGCCCTCCCCTTCCCCCCAGC
TCTCAGGAGTATGACTCGAGGGGTGGCAGGAAGAGCAGCAGCGAGGGAGG
GGAGGACAAGAAGTCGAACCGGAGCGGCGGTGCCAGGGCGAGCAGCAGTA
GCCGCAGGAACGGAGCGGTCAGGGTTAGCTGC
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