mRNA_Ecto-sp13_S_contig704.18093.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig704.18093.1
Unique NamemRNA_Ecto-sp13_S_contig704.18093.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig704.18093.1 vs. uniprot
Match: A0A6H5KDE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDE0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.870e-8
Identity = 42/59 (71.19%), Postives = 43/59 (72.88%), Query Frame = -1 
Query:    7 VHSRAALL-VRSGTLHVGAAAPAPXXXXXXXXPARVASRALVRSAVVRPLVHAPAAAVV 180
            VHSRAALL V S TLH+ AAAPA         PARVASRALV S VVRPLVH PAAAVV
Sbjct:   13 VHSRAALLLVGSSTLHLRAAAPA----ATAATPARVASRALVWSVVVRPLVHTPAAAVV 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig704.18093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDE0_9PHAE6.870e-871.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig704contigEcto-sp13_S_contig704:8034..12317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size834
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001270.1
Cds size834
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.6172512-CDS-Ecto-sp13_S_contig704:8033..85591681463965.6172512-CDS-Ecto-sp13_S_contig704:8033..8559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 8034..8559 -
1681463965.628711-CDS-Ecto-sp13_S_contig704:9431..95581681463965.628711-CDS-Ecto-sp13_S_contig704:9431..9558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 9432..9558 -
1681463965.6399255-CDS-Ecto-sp13_S_contig704:12136..123171681463965.6399255-CDS-Ecto-sp13_S_contig704:12136..12317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 12137..12317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig704.18093.1prot_Ecto-sp13_S_contig704.18093.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig704 8034..12317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig704.18093.1

>prot_Ecto-sp13_S_contig704.18093.1 ID=prot_Ecto-sp13_S_contig704.18093.1|Name=mRNA_Ecto-sp13_S_contig704.18093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=278bp
MSYHSGGGGMHKRPYDSAPYQGAGGYPGGGGGGGGGGGGGSGGADMKRSR
PDQQGGSGMYGPPGGNGGGGPRNMGGGGGGHPGGGHPGGGHPGGGGMGGP
RGSSSSSAGPSSSATPTATGAGSGAGYGGASGYGVYGSATPAPAGGGTPS
SSSSATAPGQQQQQQQQASSSAGGAGYGGRPNPAGAGAYGSPGTPAAATA
TPSAASSSTAHHGGYGGAAAVAGGYGSSSQQQQQHQHGGSAAAPAATATP
APVAAAAATPAAAAASTTATAATTAAST
back to top

mRNA from alignment at Ecto-sp13_S_contig704:8034..12317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig704.18093.1 ID=mRNA_Ecto-sp13_S_contig704.18093.1|Name=mRNA_Ecto-sp13_S_contig704.18093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4284bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:8034..12317- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATACCACAGCGGCGGCGGGGGCATGCACAAGCGGCCGTACGACAG
CGCTCCTTACCAGGGCGCGGGAGGCTACCCGGGCGGGGGCGGCGGCGGCG
GCGGCGGCGGCGGGGGCGGGAGCGGCGGCGCCGACATGAAGCGTTCCAGA
CCGGACCAGCAAGGCGGCTCGGGAATGTACGGTGAGTAAAAAATTAGTGG
TTTTACCCCTAATCCTTACACAGAGAGAGGCAATAACAAACGGGACTGCT
TGTCATCAGCACGTTCTTCCGATCAGTGGAGTGGCACCACAGGACGCGCC
CCGTCTAAACTCGACCATCTTCCGTTTGTTTTGTCTCGCTGCCCTTCTTG
TTTGTCTCTTTTTGTCCGGACTCGTGAGTTGGCACTTATTCTTCAAGATC
CCAGATCCCAGAGCGGGGCACGTTTTTATCATTATCCCCGTTTTTTTTCT
TGGTTTTCTCTTTTTTACTTGTGCTGAGTACAAAAGCTAGTTCCGTCCTG
TGGAATGCCACACACCCCCCGCTCTCTCTGTCGTGCGCGGGCCGGCGGCG
ATCGAAAGAGAACACAAGGGGAGAAGCAGCTCCTGCCACTGCCCGCGGCC
GCCGCCGCCGCCGCCGTCCATGCTGGCTGTGCTGCGTGCTATTCTCTCCC
CCCCGCCCTTACGGGTTATGTAGGACGGGAGCTTGTTTATGCAGCTCGTC
CCTGGCTTTGCCTGCTGTTCTACGAGGAGCAGCAGGTTGGACGAAAATTT
TTGCGCCAAGAACATGTGCTGCATCCACAACAGGCAGATGGCATCCCTGA
TGCTTCAACAATTCAGGGGACAGGCTCAAAAGTTAGCTCAGTTTTCCGAC
CGTTTTCCCTCCTAACCCTGAAAAGGCCTCAGCACGTCCCTTCCGAGTGC
TTCGGTTTTCTATCGAACGGCCAGGTCTTTCTGTGTGTTCATATGCTTGT
GCAGTTTTTTCTACTACACCTGCCACATTGTTCCTACACCCGCCACAGCA
GCGCGTGGTGCCGCAGTGCCTCATGCTCTCCCTTTCCAACTCGAGTCTGT
GTTTTTGCGCGAAAATAATCGTGTTTTTTGCGGGAGGTAACCATGTTTGG
TTGTCGTCCGGGATAAACTAGAAAGTATTTCACAGCGCTACAGCCTGGAG
CCTATGTTTCCATCATGTGGGTACACCCCGAGCAGCAGCGTGTATTTTTC
AACGGCACTTGCCCTGTGGGGAAACAGGCTTTCACGGAGTAGTAGATTAC
TCTCACACATGCGGGCTCTACACACGAGACGAAGAGAGACGACAACGCAT
TTTATATACAACCATTGGATAAACCAGCATGGGGTACGTGTACTCCTAAA
ACTAACAACTAACGGCAACCATGCGCACGGCAGCAGCAGCACTGTAGCGC
TCGCTTGATCTGCAGGTCTTGCGATTGTTTGTGGCGCAGTCTTAGTCGGA
AGGAAGAATGGACAAATTGAAAAAGTGAAAAAAAATCTGACTCTTTGCCT
GACGCCGCACGGCAGTCACTGACCGCCACTGATTGCTTCCCTTTACCGCC
GTCATACCGTACCCCCCACGTTCTACTCACCGGTAACTGTAATCACCGTC
CTTGTTCCTCCCTTTTCGGAAGATGTACATAGCACGCCGCACGTTGCGTC
AAGATATCATACCCGCTGGACGGATTGTCAAAGCTCGGTTTGTCGATGAC
GAAGAGGATGCCGATACATCGCACCTTTTTCAGAAAGCGACACTAAAATT
TTACGAAGGTTTTTGTTGAAATCTACAGAAGTGAGTCGGAGGCAAATATG
CATATGCATTACAATAGACATACAACACATACAAACTTGCAGTACTCGCG
TTTTCTGGAAAGCTATCGACGAGACGACGGGTCAAACGCTGCAATTTTCG
GTTTTGTTTTGTTTTGTTTTGTGAAAATGACCCAACGAATCCATCTTTGC
CAATTGTAAAGTTTTGGGACGGACACCGGTTTCCTTCCCCAGTACATAAT
CGAGCTTTCAGAAATCGGTCCAGGAGGTGTGAAGTCTGTTGACGCACCCT
CTCTAGGGTACAGATAGCGCGACATTGTTGTCGTTGGGGTGGCATTGGCA
CTTGCAGGAAACCGTATACTTCTGTACACCACCTCAGCTCCGTAAGACTG
TGGTTATCCGACCGGTTGGTTTGTCTCGTGGTGCTACTACTTACGTGCGT
CTCTACAGCGGCGCCACAACTTTTGTCCCATTCCACGCCGCTTCAGTAAT
CGCCGAATCGTTCCGTGCGCAATAAATCAGCGAAATATTTCGCGTCCAAA
ACCGAAAATTATTTTGTATGAACAAAACACTGCTGTGCACACAAAAAAAC
TACCAAGCCTCGTGGAGGATATAAGCTTGGTGTTGATGGGGGGCACAGCA
AAAATTATGTTTTCGTGGAAGCTGGATTTCTTTGTACACGGGGCCCCGCT
CCGTTATGATAACACAAGTGTGTGATGAGAACGTCAGCTGGTGGTGTTTG
TGATGATGTCATCGTTGTGACCGTAACTCCCTCCAAAGTTTTCCAAATCT
CTTTTGTTCCCGTAGCCACCCCTCCATCCCCCCTTCCCACGTGCGTGCCT
CACGATCGTGGTCTCTGCGACATTTCCGCTCATGTTTCGTTGGCGTTGTT
TCGTTTTGATTTTTTTGTCGCTCCGACGCCAACCAACCCTAGCATCCTCC
AACCCTAACACGTTCCTCTCTCACCACATCGTGGTCTGTGCAAACCCCAC
TGACGCCAGGCCCACCCGGCGGCAACGGCGGCGGGGGCCCCCGCAACATG
GGAGGTGGCGGCGGCGGTCACCCCGGCGGCGGTCACCCCGGCGGCGGACA
TCCCGGCGGCGGCGGAATGGGGGGACCCCGTGGCAGGTATGACTGAGTCG
CACTTGGGGGGGGGAGGGGGAGGAGGGGGAGGGGGCAGGGACCGCCTGCG
CGAGGAAAAATCGTACCAGGAAACAGAACAGGAAAAGGGCACGCAGACCC
CATACAACCCATCTTCCCCGAGTGCCTTCTCTACACCCAACATGTTCTTT
GGTCAACGAAACACCCTGCGAAGGCTACTGGGGGGGTGGTGGGTGGGCAC
GCGGTTAACTTTTTTTTCCGCTTTGGTACGAATGTGCAGGACACAATTTA
GGGAACTATGCGTAGCGGCCGAGAATTCGGAGAGACGGCGGGGGGAGGGA
GGTAGGGGGGGACGCGCCCAGCTAACCACCGCTCTGTTTTGAAATCAGCA
AAATAGCGTACAACATACACCAACGCTTAAGACTTAGGTAGACCGGGGGG
GTTTCTTGATTGTTGAACGCCTGATTTTTGTTTTTGTGACGTGCCTAAAT
TTTCAGGTACGGTCCCCCCCAGGAGCCCCACCCCTCCAACGGCGGCGGTG
GCCCCGGCGGGCCCGGCGGGCCCGCCATGTCCAGGGGCTCCTCGGGGAAC
GGACCCCCGCCGTCTGGACAGCCCGGACCCGGGCAGCACCAGCATCATCC
CTACGGGCAGCCTCCGTACGGCCAGCACCAGCACCACGGGCAGCAGCAGC
CGCCGCAGCAGCACCAGCAGCATCAGCAATCTGGTTACCCGGGGAGCCAC
TCTCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGCAGCAGCGTCCCCCATA
CGGTCAGCAGCAGCAGCAGCAGCCGGGCCAGCCGGGCCAGCAGCCGCGGT
ACGGCGGCGGTGGCAGCGGCCACGCTGCTGCCGGCTCGTCGACCCAGAAC
CCCTCCAGCTCTTCGTCCTCTGCCGGGCCATCCTCCTCGGCGACCCCGAC
GGCGACTGGCGCCGGCAGCGGCGCCGGCTACGGCGGTGCTAGCGGGTACG
GCGTGTACGGCAGCGCTACCCCAGCCCCCGCCGGCGGCGGGACGCCGTCG
TCTTCGTCTTCTGCCACCGCTCCGGGACAGCAGCAGCAGCAGCAGCAGCA
AGCGTCGTCTTCTGCCGGTGGCGCCGGTTACGGCGGCCGGCCCAACCCCG
CCGGCGCCGGCGCTTACGGGAGCCCCGGGACTCCGGCGGCGGCCACCGCT
ACGCCGTCGGCGGCGTCGTCTTCCACCGCTCACCACGGCGGGTACGGCGG
CGCTGCTGCTGTTGCCGGCGGATACGGGTCTTCTTCCCAGCAGCAGCAGC
AGCACCAGCACGGGGGTAGTGCTGCTGCCCCCGCGGCGACGGCTACCCCG
GCGCCGGTTGCTGCGGCGGCTGCGACTCCGGCGGCGGCAGCAGCGAGCAC
CACTGCCACGGCGGCCACGACGGCTGCGAGCACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig704:8034..12317-

>mRNA_Ecto-sp13_S_contig704.18093.1 ID=mRNA_Ecto-sp13_S_contig704.18093.1|Name=mRNA_Ecto-sp13_S_contig704.18093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:8034..12317- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATACCACAGCGGCGGCGGGGGCATGCACAAGCGGCCGTACGACAG
CGCTCCTTACCAGGGCGCGGGAGGCTACCCGGGCGGGGGCGGCGGCGGCG
GCGGCGGCGGCGGGGGCGGGAGCGGCGGCGCCGACATGAAGCGTTCCAGA
CCGGACCAGCAAGGCGGCTCGGGAATGTACGGCCCACCCGGCGGCAACGG
CGGCGGGGGCCCCCGCAACATGGGAGGTGGCGGCGGCGGTCACCCCGGCG
GCGGTCACCCCGGCGGCGGACATCCCGGCGGCGGCGGAATGGGGGGACCC
CGTGGCAGCTCTTCGTCCTCTGCCGGGCCATCCTCCTCGGCGACCCCGAC
GGCGACTGGCGCCGGCAGCGGCGCCGGCTACGGCGGTGCTAGCGGGTACG
GCGTGTACGGCAGCGCTACCCCAGCCCCCGCCGGCGGCGGGACGCCGTCG
TCTTCGTCTTCTGCCACCGCTCCGGGACAGCAGCAGCAGCAGCAGCAGCA
AGCGTCGTCTTCTGCCGGTGGCGCCGGTTACGGCGGCCGGCCCAACCCCG
CCGGCGCCGGCGCTTACGGGAGCCCCGGGACTCCGGCGGCGGCCACCGCT
ACGCCGTCGGCGGCGTCGTCTTCCACCGCTCACCACGGCGGGTACGGCGG
CGCTGCTGCTGTTGCCGGCGGATACGGGTCTTCTTCCCAGCAGCAGCAGC
AGCACCAGCACGGGGGTAGTGCTGCTGCCCCCGCGGCGACGGCTACCCCG
GCGCCGGTTGCTGCGGCGGCTGCGACTCCGGCGGCGGCAGCAGCGAGCAC
CACTGCCACGGCGGCCACGACGGCTGCGAGCACG
back to top