prot_Ecto-sp13_S_contig7038.18088.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7038.18088.1
Unique Nameprot_Ecto-sp13_S_contig7038.18088.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length282
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7038.18088.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 7.610e-134
Identity = 264/321 (82.24%), Postives = 268/321 (83.49%), Query Frame = 0 
Query:    1 VLPDDARDALAQGDVFRALLLLEDDPAGNVKTTEAPSSTATTN--DIXXXXXXXXXXXXXXXXXXXXXGTGPSPRAAHARLIQLLWKAGHEKEALETFDLAAARAXXXXXXXXXXXXXXXXXX-------------------------------------ALSAAQQLRRTAAAARHGAGVPGLYLELDPDTCHGIMRRKLETQDYLGVIEVMRASSRVPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGVALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 282
            VL DDARDALAQGDVFRALLLLEDDPA NV+TTEAPSSTAT    D XXXXXXXXXXXXXXXXXXXX G GPSPRAAHARLIQLLWKAGHE+EALETFDLAAARA   XXXXXXXXXXXXXXX                                     ALSA QQLRRTAAAARHG GVPGLYLELDPDTCHGIMRRKLE QDYLGVIEVMRASSRVPPRLSGGAAAVAKQ VGRGDGGVGWAPTEETYG+ALEACGKVRKRWGFKAALFLIQEMR+ANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV
Sbjct:   57 VLSDDARDALAQGDVFRALLLLEDDPACNVETTEAPSSTATATIIDXXXXXXXXXXXXXXXXXXXXXAGIGPSPRAAHARLIQLLWKAGHEREALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXXXXXARPFPNGEQQAAXXXXXXXXXXXXXXALSATQQLRRTAAAARHGTGVPGLYLELDPDTCHGIMRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAVAKQ-VGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 376
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7038.18088.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.280e-68
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 0 
Query:  158 MRRKLETQDYLGVIEVMRASSRVPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGVALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 282
            MRRKLE QDYLGVIE MRASSR PPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYG+ALEACGKVRKRWGFKA LFLIQEMRD NLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV
Sbjct:    1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7038.18088.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0B1_9PHAE7.610e-13482.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY15_ECTSI3.280e-6895.20PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 157..282
e-value: 4.2E-9
score: 38.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7038contigEcto-sp13_S_contig7038:123..1461 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7038.18088.1mRNA_Ecto-sp13_S_contig7038.18088.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7038 123..1461 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7038.18088.1 ID=prot_Ecto-sp13_S_contig7038.18088.1|Name=mRNA_Ecto-sp13_S_contig7038.18088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
VLPDDARDALAQGDVFRALLLLEDDPAGNVKTTEAPSSTATTNDIDDQQL
PAAAAAAAAAAAAAAAGTGPSPRAAHARLIQLLWKAGHEKEALETFDLAA
ARAREAASANADADAAAAEAAALSAAQQLRRTAAAARHGAGVPGLYLELD
PDTCHGIMRRKLETQDYLGVIEVMRASSRVPPRLSGGAAAVAKQEVGRGD
GGVGWAPTEETYGVALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHY
RGAVTACALTRQLSGVLPLLDEMRDRGVAADV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf