mRNA_Ecto-sp13_S_contig7038.18088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7038.18088.1
Unique NamemRNA_Ecto-sp13_S_contig7038.18088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7038.18088.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 7.610e-134
Identity = 264/321 (82.24%), Postives = 268/321 (83.49%), Query Frame = 1 
Query:    1 VLPDDARDALAQGDVFRALLLLEDDPAGNVKTTEAPSSTATTN--DIXXXXXXXXXXXXXXXXXXXXXGTGPSPRAAHARLIQLLWKAGHEKEALETFDLAAARAXXXXXXXXXXXXXXXXXX-------------------------------------ALSAAQQLRRTAAAARHGAGVPGLYLELDPDTCHGIMRRKLETQDYLGVIEVMRASSRVPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGVALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 846
            VL DDARDALAQGDVFRALLLLEDDPA NV+TTEAPSSTAT    D XXXXXXXXXXXXXXXXXXXX G GPSPRAAHARLIQLLWKAGHE+EALETFDLAAARA   XXXXXXXXXXXXXXX                                     ALSA QQLRRTAAAARHG GVPGLYLELDPDTCHGIMRRKLE QDYLGVIEVMRASSRVPPRLSGGAAAVAKQ VGRGDGGVGWAPTEETYG+ALEACGKVRKRWGFKAALFLIQEMR+ANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV
Sbjct:   57 VLSDDARDALAQGDVFRALLLLEDDPACNVETTEAPSSTATATIIDXXXXXXXXXXXXXXXXXXXXXAGIGPSPRAAHARLIQLLWKAGHEREALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXXXXXARPFPNGEQQAAXXXXXXXXXXXXXXALSATQQLRRTAAAARHGTGVPGLYLELDPDTCHGIMRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAVAKQ-VGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 376
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BLAST of mRNA_Ecto-sp13_S_contig7038.18088.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.280e-68
Identity = 119/125 (95.20%), Postives = 120/125 (96.00%), Query Frame = 1 
Query:  472 MRRKLETQDYLGVIEVMRASSRVPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGVALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 846
            MRRKLE QDYLGVIE MRASSR PPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYG+ALEACGKVRKRWGFKA LFLIQEMRD NLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV
Sbjct:    1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7038.18088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0B1_9PHAE7.610e-13482.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY15_ECTSI3.280e-6895.20PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7038contigEcto-sp13_S_contig7038:123..1461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score237.3
Seed ortholog evalue8.9e-60
Seed eggNOG ortholog2880.D7FY15
Model size846
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size846
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.3501058-CDS-Ecto-sp13_S_contig7038:122..3051681463965.3501058-CDS-Ecto-sp13_S_contig7038:122..305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 123..305 -
1681463965.3629792-CDS-Ecto-sp13_S_contig7038:675..10231681463965.3629792-CDS-Ecto-sp13_S_contig7038:675..1023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 676..1023 -
1681463965.3723345-CDS-Ecto-sp13_S_contig7038:1146..14611681463965.3723345-CDS-Ecto-sp13_S_contig7038:1146..1461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 1147..1461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7038.18088.1prot_Ecto-sp13_S_contig7038.18088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7038 123..1461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7038.18088.1

>prot_Ecto-sp13_S_contig7038.18088.1 ID=prot_Ecto-sp13_S_contig7038.18088.1|Name=mRNA_Ecto-sp13_S_contig7038.18088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
VLPDDARDALAQGDVFRALLLLEDDPAGNVKTTEAPSSTATTNDIDDQQL
PAAAAAAAAAAAAAAAGTGPSPRAAHARLIQLLWKAGHEKEALETFDLAA
ARAREAASANADADAAAAEAAALSAAQQLRRTAAAARHGAGVPGLYLELD
PDTCHGIMRRKLETQDYLGVIEVMRASSRVPPRLSGGAAAVAKQEVGRGD
GGVGWAPTEETYGVALEACGKVRKRWGFKAALFLIQEMRDANLEISLVHY
RGAVTACALTRQLSGVLPLLDEMRDRGVAADV
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mRNA from alignment at Ecto-sp13_S_contig7038:123..1461-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7038.18088.1 ID=mRNA_Ecto-sp13_S_contig7038.18088.1|Name=mRNA_Ecto-sp13_S_contig7038.18088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7038:123..1461- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTGCCGGACGACGCGCGGGACGCCCTGGCCCAGGGCGACGTTTTCAG
GGCCCTGCTCCTGCTGGAGGACGACCCGGCTGGCAACGTAAAAACGACCG
AAGCTCCATCATCAACAGCAACAACAAATGACATAGACGACCAGCAGCTA
CCGGCGGCGGCCGCGGCGGCTGCGGCAGCAGCAGCGGCGGCGGCGGCGGG
GACCGGCCCCAGCCCCAGAGCGGCCCACGCGAGGCTCATCCAGCTCCTGT
GGAAAGCGGGGCACGAGAAGGAGGCCCTGGAGACGTTCGACCTTGCCGCG
GCTCGCGCCCGCGAGGTCGCCACGGCGGCAGCGGCGACGTCGGCCAGTTC
ATGGCAGCCACAGCAGCTGCAGCAGCAGGCGCCGCCCTCTCCCAACGGTG
AGCAACAGGCACGACCTTTTCCCAACGGCGAGCAGCAGGCGGCGTCAGCC
AACGCCGACGCTGATGCCGCCGCCGCAGAGGCAGCAGCGTTGTCGGCCGC
GCAGCAGCTCCGACGTACCGCCGCCGCGGCCAGGCACGGCGCCGGCGTCC
CCGGGCTCTACCTGGAGCTCGACCCGGACACCTGCCATGGGATCATGCGC
CGGAAGCTGGAGACGCAGGACTACCTGGGCGTGATCGAGGTCATGCGGGC
GTCGTCCCGCGTGCCCCCTCGTCTTTCGGGAGGAGCTGCTGCTGTTGCGA
AACAGGAGGTGGGACGGGGCGACGGCGGAGTGGGGTGGGCGCCTACGGAA
GAGACGTACGGCGTTGCGCTGGAGGCGTGCGGGAAGGTGCGCAAGATCGT
CAATGCGCCGCTGCTTCTTTCTTGGCCATGCCGCGTTGGTGCCATCCTTA
TAGCAACGCGTGTAAATGTGTCTGTACATCAAGTGCCGAGCTGACAGCAA
CTCGTGTACATGTACATCCAAGTTTTTCTCCACAACACTACCACCATCGC
CGGCGGCATTACTGTAGGCGTTTGTACCCAGATATTTGTATTCTGCCTTT
TTTTGGACCATGGCCTCTATTCCTCAAGGCTTTCGTTTGTGCAGCTGCCA
TTGAAATCGTCCGTGCTTCCCTCCTCGTACCCCCCTCCTCCCGTCCTCTC
CCCTCTAATCTGCACCCTACTCCTTCACCCCCCCACGCCCCCGGGCGGAC
GAAAAGGTTCGAAAGCGGTGGGGCTTCAAGGCGGCCCTGTTCCTGATCCA
GGAGATGCGCGACGCCAATCTGGAGATCTCCCTGGTGCACTACCGGGGAG
CGGTGACGGCATGCGCGCTCACGAGGCAGCTGTCCGGGGTGCTCCCCCTA
CTGGACGAGATGAGGGATCGCGGCGTCGCCGCGGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7038:123..1461-

>mRNA_Ecto-sp13_S_contig7038.18088.1 ID=mRNA_Ecto-sp13_S_contig7038.18088.1|Name=mRNA_Ecto-sp13_S_contig7038.18088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7038:123..1461- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTGCCGGACGACGCGCGGGACGCCCTGGCCCAGGGCGACGTTTTCAG
GGCCCTGCTCCTGCTGGAGGACGACCCGGCTGGCAACGTAAAAACGACCG
AAGCTCCATCATCAACAGCAACAACAAATGACATAGACGACCAGCAGCTA
CCGGCGGCGGCCGCGGCGGCTGCGGCAGCAGCAGCGGCGGCGGCGGCGGG
GACCGGCCCCAGCCCCAGAGCGGCCCACGCGAGGCTCATCCAGCTCCTGT
GGAAAGCGGGGCACGAGAAGGAGGCCCTGGAGACGTTCGACCTTGCCGCG
GCTCGCGCCCGCGAGGCGGCGTCAGCCAACGCCGACGCTGATGCCGCCGC
CGCAGAGGCAGCAGCGTTGTCGGCCGCGCAGCAGCTCCGACGTACCGCCG
CCGCGGCCAGGCACGGCGCCGGCGTCCCCGGGCTCTACCTGGAGCTCGAC
CCGGACACCTGCCATGGGATCATGCGCCGGAAGCTGGAGACGCAGGACTA
CCTGGGCGTGATCGAGGTCATGCGGGCGTCGTCCCGCGTGCCCCCTCGTC
TTTCGGGAGGAGCTGCTGCTGTTGCGAAACAGGAGGTGGGACGGGGCGAC
GGCGGAGTGGGGTGGGCGCCTACGGAAGAGACGTACGGCGTTGCGCTGGA
GGCGTGCGGGAAGGTTCGAAAGCGGTGGGGCTTCAAGGCGGCCCTGTTCC
TGATCCAGGAGATGCGCGACGCCAATCTGGAGATCTCCCTGGTGCACTAC
CGGGGAGCGGTGACGGCATGCGCGCTCACGAGGCAGCTGTCCGGGGTGCT
CCCCCTACTGGACGAGATGAGGGATCGCGGCGTCGCCGCGGACGTG
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