mRNA_Ecto-sp13_S_contig7036.18086.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7036.18086.1
Unique NamemRNA_Ecto-sp13_S_contig7036.18086.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7036.18086.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 8.570e-69
Identity = 230/255 (90.20%), Postives = 231/255 (90.59%), Query Frame = 1 
Query:    1 HPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ALSARRWRLREAALLCLGVASKPITRQVKRRCPLAVKLKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SCPNAPERGTRGGEGAXXXXXXXXKCKHKCKNSKASSFSPGTLCRGARGLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE 750
            HPVSTARSAGLALIR+LCEAFPDK VPALIAEAKSALVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ALSARRWRLREAALLCLGVASKPITRQVKRRCPLAVKLKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   SC NAPERGTR     XXXXXXXX            SFSPGTLCRGARGLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE
Sbjct:  356 HPVSTARSAGLALIRELCEAFPDKVVPALIAEAKSALVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSARRWRLREAALLCLGVASKPITRQVKRRCPLAVKLKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCWNAPERGTR--XXXXXXXXXXXXXXXXXXXXXXXSFSPGTLCRGARGLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE 608
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BLAST of mRNA_Ecto-sp13_S_contig7036.18086.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.770e-49
Identity = 173/252 (68.65%), Postives = 173/252 (68.65%), Query Frame = 1 
Query:    1 HPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--LSARRWRLREAALLCLGVASKPITRQVKRRCPLAVKLKKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCPNAPERGTRGGEGAXXXXXXXXKCKHKCKNSKASSFSPGTLCRGARGLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE 750
            HPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LSARRWRLREAALL  G                                                                TRGGE  XXXXXXXX        SKASSFSPGTLCRGARGLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE
Sbjct:  495 HPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSARRWRLREAALLWGG----------------------------------------------------------------TRGGEXXXXXXXXXXXXXXXXXXSKASSFSPGTLCRGARGLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE 682
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7036.18086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6E1_9PHAE8.570e-6990.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8B3_ECTSI1.770e-4968.65Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7036contigEcto-sp13_S_contig7036:2569..5146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score184.5
Seed ortholog evalue6.1e-44
Seed eggNOG ortholog2880.D7G8B3
Preferred nameIPO9
Model size752
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K20224
KEGG TC1.I.1
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons4
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5657@1,KOG2274@2759
EC2.7.1.48
Cds size750
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.1430612-CDS-Ecto-sp13_S_contig7036:2568..26401681463965.1430612-CDS-Ecto-sp13_S_contig7036:2568..2640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7036 2569..2640 +
1681463965.1724796-CDS-Ecto-sp13_S_contig7036:3620..38321681463965.1724796-CDS-Ecto-sp13_S_contig7036:3620..3832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7036 3621..3832 +
1681463965.181507-CDS-Ecto-sp13_S_contig7036:4125..44951681463965.181507-CDS-Ecto-sp13_S_contig7036:4125..4495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7036 4126..4495 +
1681463965.190299-CDS-Ecto-sp13_S_contig7036:5049..51451681463965.190299-CDS-Ecto-sp13_S_contig7036:5049..5145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7036 5050..5145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7036.18086.1prot_Ecto-sp13_S_contig7036.18086.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7036 2569..5145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7036.18086.1

>prot_Ecto-sp13_S_contig7036.18086.1 ID=prot_Ecto-sp13_S_contig7036.18086.1|Name=mRNA_Ecto-sp13_S_contig7036.18086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
HPVSTARSAGLALIRDLCEAFPDKAVPALIAEAKSALVDSSSSSAGAGGG
DGEAGAATSAANNNIPRAADVVPPAVAAAALSARRWRLREAALLCLGVAS
KPITRQVKRRCPLAVKLKKEQQHNNTTNSNGGSGGGGSSSANGSHAASSS
SSSCPNAPERGTRGGEGAGGGAAAGGKCKHKCKNSKASSFSPGTLCRGAR
GLGLDLGGFQAVIVAAAEGRSHHPQEVSSPFVHARGLWATARFASLLSAE
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mRNA from alignment at Ecto-sp13_S_contig7036:2569..5146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7036.18086.1 ID=mRNA_Ecto-sp13_S_contig7036.18086.1|Name=mRNA_Ecto-sp13_S_contig7036.18086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2578bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7036:2569..5146+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCTGTCTCGACAGCGAGATCGGCGGGGCTAGCCTTGATCCGGGACCT
GTGCGAGGCGTTCCCGGATAAGGTGAGGGGGCACCGTCGATTCGTAGCAG
CTGCAAGAGTTGCATACCGTATACGACACAAAAGAACACCCCCCCTGGAC
CGATTTTAGCTCGATTTTCCAACACCAGCAAGACAGCGCCGAAAACGACA
GCGTTGAGGCCGTCTGGTCGAGAGCTCTCCGAAAACGTATCGTTTCGTTT
ATGCGTCCTCTTCGTCGTCGAGAATGGAGCTTTGAAAATCGCTCCAGGGG
GTGTATATCTTTCGTCCCATCCGGTAGTCGATTTGGAGGTGCACGAGTTA
GTCGATTTGCAGCCGCAAGATTAGTCGATTCGCATCGAAGGTTCATGAGT
TCTGCAAGCGTTCGCTTACGTTTTCCACCGTTGTGTTTTCCGAGAGTTTG
TCTGCATAGCGGCCGCTGCAGTTGTGTAGGCGGGGCGTACTCATGTTTTA
CATGCCCTATTTGTTAGACCATTGACCACGCTTCCTCGAGAGGACGGAGC
GTGGAAAGGGGGGGGGGGTAGGATTTACGTCTCGGGGCTTGGCGCTCGGT
CGTCGTTTGCCCTTATTTCGTGGTGGCTCTGTTTGGCTTTATATTTTGGT
GCTATACCTGGGTATGCGCGGCCGTGGTTGAATGCTGTGATGAGCGCTGG
CGGACGCGCGGACAATGGTGGGCTAATAGGCGAGCCGACAGAGTCGGTGC
TCCCTGTCATGGCTACTCCTGCGGCTGAAAATGTGTCGTTCCCTCCACGC
TTGAGAACAAGTTTGTGGTTCGTACGCCCTCCTTACCTCTAACCCCGGTG
TGACTACTGTTGATGTGTCAAACAGGGACATGACCGACTCTCTCCGACTC
TCTCCGTCTGTCTCCCTGCCCTTTCTCTGTCTGTCTGTCTCTCTCTGTCT
CTTTATCTCTCTTTCTCTCCCCTCTCTCTCTCTCCCTCCCTCTCTCTTTC
TCTCTCCCTCTCTCTCTCTCGCGCGCGCGCGTGGTTGTGGTAAATAACGC
AGGCGGTGCCGGCCCTCATCGCCGAGGCGAAGTCAGCACTCGTGGACTCT
TCCTCCTCGTCTGCTGGCGCCGGTGGGGGGGACGGGGAGGCTGGAGCAGC
CACGTCGGCGGCGAACAACAACATCCCAAGGGCGGCAGATGTTGTCCCTC
CAGCCGTAGCGGCGGCGGCGTTGTCGGCTAGACGATGGCGTCTTCGAGAA
GCTGCCCTGCTGTGGTAAGTGAAAGCCCTAGCCCGTGAGTGACCACGGCC
TGAGCTTCTTTCCGGTTGGTTCTTGGATATCTTGTATCGAGATTTTTGGA
TTATGATTTGGATCTTGGGATATTTTTTGGACTTTCATTTTGTATTGGAG
GTGCTCTCTATGGATCTTGGATCTTGGGATCTTGGGATCTTTGCAAAGAT
CTGGATGCATCTGGCGTCCCAAAATTCTACTGTGCGTACGGGCTACATTT
TCCTTTCCGTCGCTGAGACCCCGACCCGCTCCCCCCCCGCTCTGTTCTTT
TCCCCAGTCTCGGCGTAGCGTCGAAGCCCATCACCCGTCAAGTGAAGAGA
CGATGTCCCCTCGCCGTCAAATTGAAGAAGGAGCAACAGCACAACAACAC
CACAAACAGCAACGGCGGCAGCGGCGGCGGTGGCAGCAGCAGCGCCAACG
GAAGTCACGCCGCGTCGTCGTCGTCGTCGTCGTGCCCGAACGCTCCGGAG
AGGGGCACGCGAGGGGGAGAGGGGGCCGGGGGGGGTGCGGCGGCAGGAGG
CAAGTGCAAGCACAAGTGCAAGAACAGTAAGGCTTCGTCGTTTTCTCCCG
GCACCCTCTGTCGGGGAGCGAGGGGCTTAGGCTTGGATCTGGGCGGCTTC
CAGGCAGTCATCGTTGCCGCCGCGGAGGTGAGTGAATCATTCGGGGGGCC
CCGCACCGTGTTTTGTCTCTCCTCGGGCAGGGTGGGAGGGGCAGGGGATG
TGTTACTGCAGATTGCGTCGACCTGCCGTGAAACGCTGGCTGAGCAATAA
CTGGAGGACAAGCCATCGCGAAGCCCGGTTCTATTCTGAGGGTCCCCCCA
CTGCGTGAATATGACGTTTGTTAGCGAGAACTAGTGTTCTTGCCACACGC
ACAGTCTGTCGGCAGAAAAAGGGGGCATCTACGGCCTCGTCCTTGCACTC
GGTGCTCGTCCCACACCCGATGTGCGTCAGTGCCCATGAGAGCAACACCA
TGTGTTTTTTTGTTTGTTTGTTCCCCGTTCCTCCTGTGCACTTCTCATGG
GAGCAACCCTGTTTTTGGTTGCTGCCGTCCTCTTTGTGCCTTGTCTGTGA
ATGCAACAATTTGTTTATGATTTCCTGGACTAATGCGTCTTGCTTTTGCA
GCAAAAGAAAATGATAGTTAAAGCACTTAGCTAGTTCTTGCTTCTTGCTT
GTACGGCCAACAACGCAAACGCGCAACACAGGGCCGGAGCCACCACCCTC
AAGAGGTCAGCAGCCCCTTCGTGCACGCGAGAGGCCTGTGGGCCACGGCG
AGGTTCGCGTCCCTCCTCTCCGCCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7036:2569..5146+

>mRNA_Ecto-sp13_S_contig7036.18086.1 ID=mRNA_Ecto-sp13_S_contig7036.18086.1|Name=mRNA_Ecto-sp13_S_contig7036.18086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7036:2569..5146+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCTGTCTCGACAGCGAGATCGGCGGGGCTAGCCTTGATCCGGGACCT
GTGCGAGGCGTTCCCGGATAAGGCGGTGCCGGCCCTCATCGCCGAGGCGA
AGTCAGCACTCGTGGACTCTTCCTCCTCGTCTGCTGGCGCCGGTGGGGGG
GACGGGGAGGCTGGAGCAGCCACGTCGGCGGCGAACAACAACATCCCAAG
GGCGGCAGATGTTGTCCCTCCAGCCGTAGCGGCGGCGGCGTTGTCGGCTA
GACGATGGCGTCTTCGAGAAGCTGCCCTGCTGTGTCTCGGCGTAGCGTCG
AAGCCCATCACCCGTCAAGTGAAGAGACGATGTCCCCTCGCCGTCAAATT
GAAGAAGGAGCAACAGCACAACAACACCACAAACAGCAACGGCGGCAGCG
GCGGCGGTGGCAGCAGCAGCGCCAACGGAAGTCACGCCGCGTCGTCGTCG
TCGTCGTCGTGCCCGAACGCTCCGGAGAGGGGCACGCGAGGGGGAGAGGG
GGCCGGGGGGGGTGCGGCGGCAGGAGGCAAGTGCAAGCACAAGTGCAAGA
ACAGTAAGGCTTCGTCGTTTTCTCCCGGCACCCTCTGTCGGGGAGCGAGG
GGCTTAGGCTTGGATCTGGGCGGCTTCCAGGCAGTCATCGTTGCCGCCGC
GGAGGGCCGGAGCCACCACCCTCAAGAGGTCAGCAGCCCCTTCGTGCACG
CGAGAGGCCTGTGGGCCACGGCGAGGTTCGCGTCCCTCCTCTCCGCCGAG
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