prot_Ecto-sp13_S_contig7035.18085.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7035.18085.1
Unique Nameprot_Ecto-sp13_S_contig7035.18085.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length172
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7035.18085.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 1.830e-85
Identity = 153/171 (89.47%), Postives = 157/171 (91.81%), Query Frame = 0 
Query:    1 MLSSDGKEIWRWQDGTTEDDTFEGAAMQEDGSVVLSGNSGGGFVALRLNASXXXXXXXXXXSQGTEVDSVSSCGSGYDGRMVLAGFTIASGFGVGSDTPTVLDAPDLAAVFLDTTRSVPVETELVPSAGSTPVVIAVVAGVLAVAIIGLTILERWLKKHPRRGDGSLSPLG 171
            MLSSDGKEIWRWQDGTTEDDT EGAA+Q DGSVVLSGNSGGG         XXXXXXXXXXSQGTEVDSVSSCGSGY+GRMVLAGFTIASGFGVGSD PTVLDAPDLAAVFLDTTRSVPVETELVPSAGSTPVVIAVVAGVLAVAIIGLT+LERWLK+HPRR D SLSPLG
Sbjct:  293 MLSSDGKEIWRWQDGTTEDDTLEGAAIQGDGSVVLSGNSGGGXXXXXXXXXXXXXXXXXXXSQGTEVDSVSSCGSGYNGRMVLAGFTIASGFGVGSDAPTVLDAPDLAAVFLDTTRSVPVETELVPSAGSTPVVIAVVAGVLAVAIIGLTVLERWLKRHPRRED-SLSPLG 462
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7035.18085.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.280e-85
Identity = 147/171 (85.96%), Postives = 155/171 (90.64%), Query Frame = 0 
Query:    1 MLSSDGKEIWRWQDGTTEDDTFEGAAMQEDGSVVLSGNSGGGFVALRLNASXXXXXXXXXXSQGTEVDSVSSCGSGYDGRMVLAGFTIASGFGVGSDTPTVLDAPDLAAVFLDTTRSVPVETELVPSAGSTPVVIAVVAGVLAVAIIGLTILERWLKKHPRRGDGSLSPLG 171
            MLSSDGKEIWRWQDGTTEDDT EGAA+QEDGSVVLSGNSGGG         XXXXXXXXXX Q TEVDSVS CGSGY+GRMVLAGFT AS FGVGS++PTVL+APD AAVFLDTTRSVPV+TELVPSAGSTPVVIAVVAGVLAVAIIGLT+LERWLKKHPRRG+GSLSPLG
Sbjct:  167 MLSSDGKEIWRWQDGTTEDDTLEGAAIQEDGSVVLSGNSGGGXXXXXXXXXXXXXXXXXXXXQETEVDSVSLCGSGYNGRMVLAGFTFASDFGVGSNSPTVLEAPDFAAVFLDTTRSVPVDTELVPSAGSTPVVIAVVAGVLAVAIIGLTVLERWLKKHPRRGEGSLSPLG 337
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7035.18085.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LJ25_9PHAE1.830e-8589.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G371_ECTSI4.280e-8585.96Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..149
e-value: 4.7E-6
score: 28.0
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..152
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..132
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 153..171
NoneNo IPR availableTMHMMTMhelixcoord: 130..152
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 5..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7035contigEcto-sp13_S_contig7035:2139..3587 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7035.18085.1mRNA_Ecto-sp13_S_contig7035.18085.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7035 1..6087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7035.18085.1 ID=prot_Ecto-sp13_S_contig7035.18085.1|Name=mRNA_Ecto-sp13_S_contig7035.18085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MLSSDGKEIWRWQDGTTEDDTFEGAAMQEDGSVVLSGNSGGGFVALRLNA
SGTEVWRWEGGSQGTEVDSVSSCGSGYDGRMVLAGFTIASGFGVGSDTPT
VLDAPDLAAVFLDTTRSVPVETELVPSAGSTPVVIAVVAGVLAVAIIGLT
ILERWLKKHPRRGDGSLSPLG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR011047Quinoprotein_ADH-like_supfam