mRNA_Ecto-sp13_S_contig7026.18078.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7026.18078.1
Unique NamemRNA_Ecto-sp13_S_contig7026.18078.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7026.18078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7026contigEcto-sp13_S_contig7026:2..1246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size566
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463964.0514736-UTR-Ecto-sp13_S_contig7026:1..21681463964.0514736-UTR-Ecto-sp13_S_contig7026:1..2Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7026 2..2 +
1681463964.0943913-UTR-Ecto-sp13_S_contig7026:1215..12461681463964.0943913-UTR-Ecto-sp13_S_contig7026:1215..1246Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7026 1216..1246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463964.063134-CDS-Ecto-sp13_S_contig7026:2..231681463964.063134-CDS-Ecto-sp13_S_contig7026:2..23Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7026 3..23 +
1681463964.0741055-CDS-Ecto-sp13_S_contig7026:339..8321681463964.0741055-CDS-Ecto-sp13_S_contig7026:339..832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7026 340..832 +
1681463964.084427-CDS-Ecto-sp13_S_contig7026:1195..12151681463964.084427-CDS-Ecto-sp13_S_contig7026:1195..1215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7026 1196..1215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7026.18078.1prot_Ecto-sp13_S_contig7026.18078.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7026 3..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7026.18078.1

>prot_Ecto-sp13_S_contig7026.18078.1 ID=prot_Ecto-sp13_S_contig7026.18078.1|Name=mRNA_Ecto-sp13_S_contig7026.18078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MPATPPPDGTRTPEPFVDPTMVGGLGGGKHQKNTSKFVYRGGFKIPKELT
PMPSVESLGAFPGDAGSTIAMGSINVNLNSASECEADRSREHCASGRDGS
DSRARLSDRGGSRRGVEQDPGLFIRSSRMRVGGGNERGLGGGREGIKMPR
PKTANATLGREHTLFSTGVRGGFAALA*
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mRNA from alignment at Ecto-sp13_S_contig7026:2..1246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7026.18078.1 ID=mRNA_Ecto-sp13_S_contig7026.18078.1|Name=mRNA_Ecto-sp13_S_contig7026.18078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1245bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7026:2..1246+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCGGCCACACCACCACCGGTAAGTGCATAAATGTTGTGTCACATGC
ATCCGTTTTCTACGAGGGTTTAGCTCCTCGTGCATTCTGAAGAATGGTGA
AGTCTTAGACCGAATATTGTTGAGTGAAAGACGGGCGTGGTCTTCTAAAG
CGAAATACGGTATATTTCTCTCAACGCAAAAATGTTGCGGGGGAAGCCAA
AATACTCGGCCAAGTGCCTGGATGAGAAGCCGCCGTATTATAAATATATT
TAATACAAAACAAACTTCGCAAAATGTAAGAGCAATTCCACCCGTCAATA
TTTTTTTTTGTTCGTGTACAAAACGCCATGATCACAAGGATGGAACGCGT
ACCCCCGAACCATTCGTAGATCCCACAATGGTGGGAGGTTTGGGGGGAGG
GAAACATCAGAAAAACACCAGCAAGTTTGTGTACCGAGGAGGTTTCAAAA
TCCCTAAGGAGCTCACGCCAATGCCTAGCGTCGAAAGCCTGGGAGCCTTT
CCGGGAGACGCTGGCAGCACAATTGCAATGGGCAGCATCAACGTCAATTT
GAACAGTGCGTCCGAGTGTGAGGCTGATCGCTCTCGAGAACACTGCGCCA
GCGGCAGGGATGGGAGCGATAGTAGAGCCAGACTCAGTGATCGCGGGGGC
AGTAGGCGAGGGGTCGAACAAGATCCCGGCTTGTTTATCAGAAGTTCGAG
GATGAGGGTTGGGGGTGGCAACGAGCGAGGATTGGGCGGCGGGAGAGAGG
GCATCAAGATGCCCAGACCGAAGACTGCAAACGCAACTCTGGGGCGGGAG
CATACTCTATTCTCCACTGGCGTGAGAGGAGGTGCGTCGTTCCATTGTTC
ATCTGAGAAGGGGGCGGGGGAGGGTGGAGTGTCCCGCCAGAGAGTTGTTC
AAGCGTACCCGGCAGGTTGGTTGAAGTATGTGAACCTCGACGCTGGGTAT
GGGGCGTTAAACCTTCGTTGTTGGCTCAAACTCCGGCGGGCGAAACTTCT
TAGTGGTTTATTGCTTGGAACTCGTTTCCACCAGGGATCGAGGCAGCAAC
GAACACCCACCAGCGCATGCGCTACCCCCACCGCCACCTGCCTAACTCCC
CGTCGTACCGCTCTTGTGTCAAACTGCTGTCATGTATTGGCCTGAATCGT
GGCGGTGGGAATGCGCTTGTCGGACTTCTTCACGGTGGGGTCAGGCTTCG
CAGCTCTAGCCTAGTCAGCGACGGGGCGACAAGAGCTTCACCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7026:2..1246+

>mRNA_Ecto-sp13_S_contig7026.18078.1 ID=mRNA_Ecto-sp13_S_contig7026.18078.1|Name=mRNA_Ecto-sp13_S_contig7026.18078.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7026:2..1246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCCACACCACCACCGGATGGAACGCGTACCCCCGAACCATTCGT
AGATCCCACAATGGTGGGAGGTTTGGGGGGAGGGAAACATCAGAAAAACA
CCAGCAAGTTTGTGTACCGAGGAGGTTTCAAAATCCCTAAGGAGCTCACG
CCAATGCCTAGCGTCGAAAGCCTGGGAGCCTTTCCGGGAGACGCTGGCAG
CACAATTGCAATGGGCAGCATCAACGTCAATTTGAACAGTGCGTCCGAGT
GTGAGGCTGATCGCTCTCGAGAACACTGCGCCAGCGGCAGGGATGGGAGC
GATAGTAGAGCCAGACTCAGTGATCGCGGGGGCAGTAGGCGAGGGGTCGA
ACAAGATCCCGGCTTGTTTATCAGAAGTTCGAGGATGAGGGTTGGGGGTG
GCAACGAGCGAGGATTGGGCGGCGGGAGAGAGGGCATCAAGATGCCCAGA
CCGAAGACTGCAAACGCAACTCTGGGGCGGGAGCATACTCTATTCTCCAC
TGGCGTGAGAGGAGGCTTCGCAGCTCTAGCCTAG
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