mRNA_Ecto-sp13_S_contig7024.18076.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7024.18076.1
Unique NamemRNA_Ecto-sp13_S_contig7024.18076.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7024.18076.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 1.130e-28
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:   58 MEDGIRSPAFSRSTSASEQASVDETRQEVKQIQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQ 249
            MEDGIRSPAFSRSTSA EQASVDETRQEVK IQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQ
Sbjct:    1 MEDGIRSPAFSRSTSAGEQASVDETRQEVKVIQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQ 64
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BLAST of mRNA_Ecto-sp13_S_contig7024.18076.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.680e-12
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:  151 IQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQ 249
            IQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQ
Sbjct:   31 IQEGIVLVHDARRFGVSERGLWHLDRLHSRAFQ 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7024.18076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHK8_ECTSI1.130e-2896.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE6.680e-12100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7024contigEcto-sp13_S_contig7024:4013..5836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size251
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.8422885-CDS-Ecto-sp13_S_contig7024:4012..41141681463963.8422885-CDS-Ecto-sp13_S_contig7024:4012..4114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7024 4013..4114 -
1681463963.8535552-CDS-Ecto-sp13_S_contig7024:5689..57791681463963.8535552-CDS-Ecto-sp13_S_contig7024:5689..5779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7024 5690..5779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.8644524-UTR-Ecto-sp13_S_contig7024:5779..58361681463963.8644524-UTR-Ecto-sp13_S_contig7024:5779..5836Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7024 5780..5836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7024.18076.1prot_Ecto-sp13_S_contig7024.18076.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7024 4013..5779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7024.18076.1

>prot_Ecto-sp13_S_contig7024.18076.1 ID=prot_Ecto-sp13_S_contig7024.18076.1|Name=mRNA_Ecto-sp13_S_contig7024.18076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MEDGIRSPAFSRSTSASEQASVDETRQEVKQIQEGIVLVHDARRFGVSER
GLWHLDRLHSRAFQ
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mRNA from alignment at Ecto-sp13_S_contig7024:4013..5836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7024.18076.1 ID=mRNA_Ecto-sp13_S_contig7024.18076.1|Name=mRNA_Ecto-sp13_S_contig7024.18076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7024:4013..5836- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCAGCAGTGCAGTGACCGAGTACCGAGAGGACCTCCCGGGCGTCTCC
TCTGGCGATGGAGGATGGTATCCGTAGCCCAGCATTCTCCCGCAGTACCA
GTGCTAGCGAACAAGCGTCTGTGGATGAGACCCGGCAAGAAGTAAAGGTG
TGTGTGTTTGCAACATGGGCGGCGGGCTGATTCTTTCCGACACATCGTAC
ACATGTGCAGCAAGTGCACTTTGGGTATGTTCAACGGCAGATATATGACT
TCTTTTGCATATGATTTGGAAAAAATGCGGCATTCTCGTAAAGAGAGGCA
CGCCTTGGTCTTAGGACGTGGGTTTTGTAGTCTTCCCAGCAGACAGCCTG
CTGTGGGGGATTGCACTATCAACGTGCAACCTGCGCGTGCAATACCAAGA
AGAGAGGGGGAACGACCAAGAAAACGGTTGAGCCCTACTTGCGGGGTGGA
CGGACGTATGATTCTCTTCCCACTTTGTTAACAAGGTCAAAAAGAGTGTT
GTACAGCAGTAGTCGCTCCGATGATCACACGTCCCACCTTGCCTCGTCAA
CCCCGGAGCACATTTCCACTCGCTGCTATACAGCTGCACAATCAGTTCGT
CACATGGTTACATGTTGTCGCACGAAATGCCGCGCATTGAAGTCGTTTTC
TACCACCAACCGTGCCGTAGAAAGGCTAGGCTGGTACTGTAGTACTGGCT
GAACCGCGGTAGCGTACCACAATCACTTGAAAGACAGCATGAACAACGAG
GTGATAGTTTAACTAAAGTAGACTTGTACTTAGGAAATTACACTAGCAGG
ATATTGAACCGTGTGATACACAAGTCATTGCGCCTTATATAATGGGCTTT
GATTTCAAGTGTTCGGACGGCAAGAGTAAAAACTATGATTCCACTCCTCG
TGCCGCGGATGTGATGCACGAGTACCATGGTACACAGTACCAGGTAGTTG
TCTTGGCTACCCTCAGCTATTGTTGTCAACACGAGAGGCCTCAAGAAAGC
GTTGTCCGTTTTTCCCTCAAGCCGGTCTTCTCATCTCGTGATTATGCTGC
CGATATTCCTTCCCGTACAAACCGTTTGCTTAGCAAGCCCCTTTTTTTGC
CCGTGTATGCGTACCATCTGAATGTTTTCGGGCCTGCCGCTAACGTTACA
CGACACCCAAAGTGAAACTGGACACCATGGTGGGAGGACCCTGATGGGGT
TGTGTCGGAGGATCCGAATAGGGCGTTTTAGAAAAAGAGGGCTTGTGTCG
TTGTTTATTTTGCCATCTCCCTTTGTCACGCCTGACACCGGTAGCTTGCT
ATGGTTGTTGTCCCAGCGTCGATAACACGACGATAACATACAAGTAGATA
CGAAAGTGCTGCTGCCCATTCTTTGGTGCTCCAGTTGACACCGAGAGCAA
GAGACCGTGTTTGGACATGTACCCCGAAGGTACGTCTCTCTCTCTCTCTT
TCTCTCTCTCTTCTCTCTCTCCTTCGCCCCTCTGCGTACATGTTTTCTCT
TTGTTTTCAGAGTGTGAGACAATTGACTAGGGGCTCGAAATATGGAACTG
TTCGCCTGTGTACCGTGCTCCTTCTCTTTCGTAAGTCAACCTCTGTCACG
CTTCGTCCTTGTTACCATTACTGCTCCTCATGCTCTGACCGTTGCTGTGG
CGGCCGCTGCCAATCCTTTTCGATGCCTACCTGTTCACCTCCACAAATCT
CTCTCCCCGCCCGAAAACACAGCAAATACAGGAGGGGATCGTCCTCGTTC
ACGATGCGCGCCGGTTCGGGGTGAGCGAGAGGGGGCTCTGGCACCTCGAC
CGCCTCCACTCCCGTGCATTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7024:4013..5836-

>mRNA_Ecto-sp13_S_contig7024.18076.1 ID=mRNA_Ecto-sp13_S_contig7024.18076.1|Name=mRNA_Ecto-sp13_S_contig7024.18076.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7024:4013..5836- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGATGGTATCCGTAGCCCAGCATTCTCCCGCAGTACCAGTGCTAG
CGAACAAGCGTCTGTGGATGAGACCCGGCAAGAAGTAAAGCAAATACAGG
AGGGGATCGTCCTCGTTCACGATGCGCGCCGGTTCGGGGTGAGCGAGAGG
GGGCTCTGGCACCTCGACCGCCTCCACTCCCGTGCATTCCAG
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