mRNA_Ecto-sp13_S_contig7024.18075.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7024.18075.1
Unique NamemRNA_Ecto-sp13_S_contig7024.18075.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7024.18075.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.320e-28
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 RHKTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 168
            R KTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV
Sbjct:  482 RQKTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 537
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BLAST of mRNA_Ecto-sp13_S_contig7024.18075.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.320e-28
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 RHKTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 168
            R KTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV
Sbjct:  474 RQKTQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 529
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BLAST of mRNA_Ecto-sp13_S_contig7024.18075.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.350e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   10 TQLDGMADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV 168
            T ++ +  A   ALKFLP DAAP+A+V+TDG+ + PS   YD L M+LCRHD 
Sbjct:  293 THVEDVLQAAAFALKFLPFDAAPLAVVLTDGVGERPSSCAYDSLLMQLCRHDT 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7024.18075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHK8_ECTSI2.320e-2898.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE2.320e-2898.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7M7_9STRA2.350e-1052.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7024contigEcto-sp13_S_contig7024:211..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size168
Hectar predicted targeting categorysignal peptide
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.8001933-CDS-Ecto-sp13_S_contig7024:210..3541681463963.8001933-CDS-Ecto-sp13_S_contig7024:210..354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7024 211..354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.8112206-UTR-Ecto-sp13_S_contig7024:354..3781681463963.8112206-UTR-Ecto-sp13_S_contig7024:354..378Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7024 355..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7024.18075.1prot_Ecto-sp13_S_contig7024.18075.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7024 211..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7024.18075.1

>prot_Ecto-sp13_S_contig7024.18075.1 ID=prot_Ecto-sp13_S_contig7024.18075.1|Name=mRNA_Ecto-sp13_S_contig7024.18075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MADAIVLALKFLPLDAAPIALVVTDGLVDYPSPTEYDGLSMRLCRHDV
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mRNA from alignment at Ecto-sp13_S_contig7024:211..378-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7024.18075.1 ID=mRNA_Ecto-sp13_S_contig7024.18075.1|Name=mRNA_Ecto-sp13_S_contig7024.18075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7024:211..378- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCACAAGACCCAGCTGGACGGGATGGCGGACGCTATCGTTCTCGCGCT
CAAGTTCCTGCCGCTGGACGCGGCGCCGATCGCCCTGGTGGTCACCGACG
GCCTGGTGGACTATCCCTCGCCCACGGAGTACGACGGCCTGTCCATGCGG
CTCTGCCGCCACGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7024:211..378-

>mRNA_Ecto-sp13_S_contig7024.18075.1 ID=mRNA_Ecto-sp13_S_contig7024.18075.1|Name=mRNA_Ecto-sp13_S_contig7024.18075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7024:211..378- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGACGCTATCGTTCTCGCGCTCAAGTTCCTGCCGCTGGACGCGGC
GCCGATCGCCCTGGTGGTCACCGACGGCCTGGTGGACTATCCCTCGCCCA
CGGAGTACGACGGCCTGTCCATGCGGCTCTGCCGCCACGACGTG
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