mRNA_Ecto-sp13_S_contig70227.18074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70227.18074.1
Unique NamemRNA_Ecto-sp13_S_contig70227.18074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A1S2BYX3_9GAMM (Uncharacterized protein n=7 Tax=root TaxID=1 RepID=A0A1S2BYX3_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 7.770e-29
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            TV+KGSI+V YADG EETV+AGEVYYWPPGHTV VDEDYE++EFSPSDQMGEL+ HL  K+
Sbjct:   59 TVVKGSIHVTYADGTEETVNAGEVYYWPPGHTVRVDEDYEAIEFSPSDQMGELMNHLEAKL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A2E2K0Q5_9GAMM (Uncharacterized protein n=1 Tax=Spongiibacteraceae bacterium TaxID=2026793 RepID=A0A2E2K0Q5_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 3.150e-28
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            TVLKGSI+VR+ADG EETV AGEVYYWPPGHTV VDEDYE+VEFSPS QMGE+I+HL  ++
Sbjct:   59 TVLKGSIHVRFADGHEETVRAGEVYYWPPGHTVRVDEDYEAVEFSPSGQMGEVIEHLKTQL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A2N6CGX2_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2N6CGX2_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 7.010e-28
Identity = 45/60 (75.00%), Postives = 54/60 (90.00%), Query Frame = 1
Query:    4 VLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            ++KGSI+V YADG EETV+AG+VYYWPPGHTV VDEDYE++EFSPSDQMGEL+ HL  K+
Sbjct:    1 MVKGSIHVTYADGTEETVNAGDVYYWPPGHTVRVDEDYEAIEFSPSDQMGELMNHLETKL 60          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A7C2JDQ5_9PROT (Cupin domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C2JDQ5_9PROT)

HSP 1 Score: 104 bits (260), Expect = 1.240e-27
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1
Query:    1 TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            TVL+GSI+VRYADG EETV AGEVYYWPPGHTV VDEDYE+VEFSPS  M E+I+HLA K+
Sbjct:   59 TVLRGSIHVRYADGTEETVRAGEVYYWPPGHTVRVDEDYEAVEFSPSRAMAEVIEHLASKL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A661G866_9GAMM (Cupin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661G866_9GAMM)

HSP 1 Score: 103 bits (258), Expect = 2.580e-27
Identity = 46/61 (75.41%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            TV+KGSI+VR+ADGQEETV AG+VYYWPPGHTV VDEDYE++EFSPS +MG LI+HL  K+
Sbjct:   59 TVVKGSIHVRFADGQEETVSAGDVYYWPPGHTVWVDEDYEAIEFSPSGEMGHLIEHLKSKL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A193LDG6_9GAMM (Uncharacterized protein n=1 Tax=Woeseia oceani TaxID=1548547 RepID=A0A193LDG6_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 3.660e-27
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            TVLKG+I+VRYADG EETV AGEVYYWPPGHTV VDEDYE++EFSPS  MGE+I HL  ++
Sbjct:   59 TVLKGAIHVRYADGSEETVRAGEVYYWPPGHTVRVDEDYEAIEFSPSGPMGEVINHLQTQL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A3N5KXD8_9GAMM (Cupin domain-containing protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5KXD8_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 1.410e-24
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            TVL+GSI+VRYADG+EE V AGEVYYWP GHTV VDEDYE+VEFSP+  MG++I HL  K+
Sbjct:   59 TVLRGSIHVRYADGREEVVRAGEVYYWPAGHTVWVDEDYEAVEFSPAGPMGDVIDHLDAKL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A7Y1UPR3_9ACTN (Cupin domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1UPR3_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 1.290e-17
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 VLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            V++GSI V Y DG EE V AGE+YYWP GHTV V+E    VEFSP DQM E++ H+  K+
Sbjct:   60 VIEGSIRVNYEDGSEEIVDAGEIYYWPSGHTVVVEEAVRMVEFSPHDQMSEVLAHVVGKL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A7Y1SRC3_9ACTN (Cupin domain-containing protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1SRC3_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 1.820e-17
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    4 VLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            V++G I V Y DG EETV AGE+YYWP GHT+ V+E    VEFSP DQM E++ H+  K+
Sbjct:   60 VIEGRIRVSYTDGTEETVGAGEIYYWPSGHTIVVEEAVRMVEFSPHDQMSEVVTHVVGKL 119          
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Match: A0A7C1ATA4_9ACTN (Cupin domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C1ATA4_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 1.860e-17
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    4 VLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQMGELIKHLAMKM 183
            V++GSI V Y DG EE V AGE+YYWP GHTV V+E  + VEFSP DQM +++ H+  K+
Sbjct:   34 VIEGSIRVNYEDGTEEVVGAGEIYYWPSGHTVFVEEAVKMVEFSPHDQMSQVLAHVVGKL 93          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70227.18074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S2BYX3_9GAMM7.770e-2978.69Uncharacterized protein n=7 Tax=root TaxID=1 RepID... [more]
A0A2E2K0Q5_9GAMM3.150e-2878.69Uncharacterized protein n=1 Tax=Spongiibacteraceae... [more]
A0A2N6CGX2_9GAMM7.010e-2875.00Uncharacterized protein n=1 Tax=Chromatiales bacte... [more]
A0A7C2JDQ5_9PROT1.240e-2778.69Cupin domain-containing protein n=1 Tax=Alphaprote... [more]
A0A661G866_9GAMM2.580e-2775.41Cupin domain-containing protein n=1 Tax=Gammaprote... [more]
A0A193LDG6_9GAMM3.660e-2775.41Uncharacterized protein n=1 Tax=Woeseia oceani Tax... [more]
A0A3N5KXD8_9GAMM1.410e-2472.13Cupin domain-containing protein n=1 Tax=Xanthomona... [more]
A0A7Y1UPR3_9ACTN1.290e-1758.33Cupin domain-containing protein n=1 Tax=Acidimicro... [more]
A0A7Y1SRC3_9ACTN1.820e-1756.67Cupin domain-containing protein n=2 Tax=Acidimicro... [more]
A0A7C1ATA4_9ACTN1.860e-1756.67Cupin domain-containing protein n=1 Tax=Actinomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70227contigEcto-sp13_S_contig70227:510..701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score77.4
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog566466.NOR53_3178
Model size192
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs1N4SK@1224,1SEXN@1236,2E4PM@1,32P93@2
Cds size192
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.7678652-CDS-Ecto-sp13_S_contig70227:509..7011681463963.7678652-CDS-Ecto-sp13_S_contig70227:509..701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70227 510..701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70227.18074.1prot_Ecto-sp13_S_contig70227.18074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70227 510..701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70227.18074.1

>prot_Ecto-sp13_S_contig70227.18074.1 ID=prot_Ecto-sp13_S_contig70227.18074.1|Name=mRNA_Ecto-sp13_S_contig70227.18074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
TVLKGSINVRYADGQEETVHAGEVYYWPPGHTVSVDEDYESVEFSPSDQM
GELIKHLAMKMGA*
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mRNA from alignment at Ecto-sp13_S_contig70227:510..701-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70227.18074.1 ID=mRNA_Ecto-sp13_S_contig70227.18074.1|Name=mRNA_Ecto-sp13_S_contig70227.18074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70227:510..701- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGTGCTCAAAGGCTCTATCAATGTGCGCTACGCTGATGGTCAGGAAGA GACAGTGCACGCGGGTGAGGTCTACTACTGGCCCCCGGGCCACACGGTGA GCGTTGATGAGGACTATGAATCGGTGGAGTTTAGTCCCAGTGATCAAATG GGCGAGTTGATCAAACACTTAGCCATGAAAATGGGTGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70227:510..701-

>mRNA_Ecto-sp13_S_contig70227.18074.1 ID=mRNA_Ecto-sp13_S_contig70227.18074.1|Name=mRNA_Ecto-sp13_S_contig70227.18074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70227:510..701- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGTGCTCAAAGGCTCTATCAATGTGCGCTACGCTGATGGTCAGGAAGA
GACAGTGCACGCGGGTGAGGTCTACTACTGGCCCCCGGGCCACACGGTGA
GCGTTGATGAGGACTATGAATCGGTGGAGTTTAGTCCCAGTGATCAAATG
GGCGAGTTGATCAAACACTTAGCCATGAAAATGGGTGCTTGA
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