mRNA_Ecto-sp13_S_contig7022.18072.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7022.18072.1
Unique NamemRNA_Ecto-sp13_S_contig7022.18072.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7022.18072.1 vs. uniprot
Match: D7G4V4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4V4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.270e-18
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 3 
Query:  312 MWSDAHQTVKDFFFHAAKVQNAWLENEKLADQQRGKTKAKGNKEIP 449
            MWSDAHQTVKDFF HAAKVQNAWLE+EKLADQQRGK KAKGNK+IP
Sbjct:    1 MWSDAHQTVKDFFSHAAKVQNAWLESEKLADQQRGKNKAKGNKDIP 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7022.18072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4V4_ECTSI5.270e-1891.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7022contigEcto-sp13_S_contig7022:5779..7743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size451
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000200.1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.6356487-UTR-Ecto-sp13_S_contig7022:5778..58701681463963.6356487-UTR-Ecto-sp13_S_contig7022:5778..5870Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7022 5779..5870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.6500595-CDS-Ecto-sp13_S_contig7022:5870..60381681463963.6500595-CDS-Ecto-sp13_S_contig7022:5870..6038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7022 5871..6038 +
1681463963.6672616-CDS-Ecto-sp13_S_contig7022:6904..70691681463963.6672616-CDS-Ecto-sp13_S_contig7022:6904..7069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7022 6905..7069 +
1681463963.6809895-CDS-Ecto-sp13_S_contig7022:7719..77431681463963.6809895-CDS-Ecto-sp13_S_contig7022:7719..7743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7022 7720..7743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7022.18072.1prot_Ecto-sp13_S_contig7022.18072.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7022 5871..7743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7022.18072.1

>prot_Ecto-sp13_S_contig7022.18072.1 ID=prot_Ecto-sp13_S_contig7022.18072.1|Name=mRNA_Ecto-sp13_S_contig7022.18072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MTRGASSASDDTGGKPNLRPTNAYLLFAQATRADMNAKFGGAEKSVEHFT
RKHQSRNPDVVRRSPVILSVIGKMWSDAHQTVKDFFFHAAKVQNAWLENE
KLADQQRGKTKAKGNKEIP
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mRNA from alignment at Ecto-sp13_S_contig7022:5779..7743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7022.18072.1 ID=mRNA_Ecto-sp13_S_contig7022.18072.1|Name=mRNA_Ecto-sp13_S_contig7022.18072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7022:5779..7743+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGTAGGCACGGCCAGCAATTAGATCGGATTTTTCCCGGAAACCGAGAA
ACGTAAAGAACGACAACTCGCGGGCGCGCGCTGGTGACGAAGATGACGAG
AGGCGCGTCGTCTGCATCCGACGACACCGGTGGTAAGCCGAACTTAAGGC
CAACGAACGCCTATCTACTCTTCGCTCAGGCAACACGGGCGGACATGAAC
GCTAAATTCGGCGGCGCTGAAAAATCTGTCGAGCATTTCACAAGAAAGCA
CCAAAGTCGGGTGAGTTTCGTCTCTTGCGGAGCACAGGAGTTCACTGGTG
CATTCTTTCCAGGTGTATGCATTTAGTGGATATGATTGGCCTCAGCTCTT
AGTGTACTGTTTCGAAAGAAGCGGAATGCGGGTCTGTGGGATACATGTGC
AAGGTGAACATGAATTATAGGAGAGATAACAACGCAGTGCTTAAACGCCG
ATGTTGTCCTCATCGTCAGCACGAGACGCTCTGTCCCGTGAGCTATTCGC
ACATCCGCGTGGAGATCAGCTCCATGTCCTCAGACCTAACGCTGAGGGTT
ACGATGCCTCCCGCGCCTCCCTTGACCGCTTCCAATGAACTCTCAATATC
GAGGTTCATTTTGACGCATGGCCCGCTCAGTTTTCGCCCTTGTTGTGGCC
AATTAGATAGTAAATTGGAGGGGGCGCCATTGTGGTTGTGTTGCTCCATC
AAAACAGCTGACCCACAAACGTATGGAAGTATGGAGTCCTGATTGGCAAC
AAAGCGGTCTTTTCCGGTACATCAACGCAGGAGGGACCGCGAGCGTGGGG
TTAGCTTTTTTTTATGTTTACAACGGTGTTGCTCCATGCCATGTGTTGAG
CCTTGAGCACTCTGTCTTGGTTGGCGGCTACATGTTGGTGCTACTCACGA
AAACGTTAGCCTGAACACGACTCAGTGCAACTACAGTAAACGAAACAATG
AACAACAAATCCAAGGCTGGTAGTTGTGAACAACACTCAAGATTATCGCT
TAATGATATGGTGTTCTGAAGCATTCCCGGCACGTGTCGTTACAACTGTG
AAAGCCTGTTTTTCTCACACTTTTCCTGCCCTCAACCGTCGGCTCAACCG
GCACCGCAAAAATTGCGTGTCTGCAGAATCCTGACGTTGTTAGGCGGAGC
CCCGTCATCCTAAGCGTCATTGGCAAGATGTGGTCAGACGCGCATCAAAC
AGTGAAGGATTTTTTTTTTCATGCTGCGAAGGTGCAAAATGCCTGGCTCG
AGAACGAGAAGCTCGCCGATCAGCAGCGGGGAAAAACCAAGGTGAATTGA
ACACGTTTCACTCTGGCGGAGCACTGCTTTCAGCGGCGAAGAGATTGGCC
GGCTTTGGATGCGGCTATTGTAGTTGGCTTTTGTGAGAGACAAACATCCA
CCTGCGTTGCCGTCTAGTAAGGGTTTTGGCCAGGGCGCGGGGAAACACAA
CGACCGTCAGTGCTTGAATGCTTTGTCCGATCATATCGAAGCTTGGTTTC
AAGCCCTCCATTTGGCACGTTTGCGAGCCCTTGGTAGCTTCGGTGAGTCG
TTGGATTGCATAGAGTGTTGAAGGCCAATTCCAGAGCACGTCACCAGCCC
TAGAATGTTCGATACCCCGATCGACCCCTACTCAACGAAGCACAGGGGTC
TCGAGTTCGCCCTACGTCGTGTTCGAGATCAACATCACCCGCTTGGTGAA
GACAACAAGAGGTTTGCAAAATTGTGCGACGTGGGTTGAAGGGTTTGTGA
ATTGCAGTAGCCGTCGGCATTCGGGAGGTTTGGGGCCCTGCTGTAACAGT
ATGCGTGCGTGGATATTCTCGATGAATTCTAATCGCGACGGCGAGGATCG
ATTGGACCGCCTGCAAGACCACACTCACCACAGCAGTCTATCTTTGTCTG
CGGGACTGGTTGGTTCCGTGCGCTGAATTGTTTTCAAGCAGGCGAAAGGT
AACAAGGAAATCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7022:5779..7743+

>mRNA_Ecto-sp13_S_contig7022.18072.1 ID=mRNA_Ecto-sp13_S_contig7022.18072.1|Name=mRNA_Ecto-sp13_S_contig7022.18072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7022:5779..7743+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGAGGCGCGTCGTCTGCATCCGACGACACCGGTGGTAAGCCGAA
CTTAAGGCCAACGAACGCCTATCTACTCTTCGCTCAGGCAACACGGGCGG
ACATGAACGCTAAATTCGGCGGCGCTGAAAAATCTGTCGAGCATTTCACA
AGAAAGCACCAAAGTCGGAATCCTGACGTTGTTAGGCGGAGCCCCGTCAT
CCTAAGCGTCATTGGCAAGATGTGGTCAGACGCGCATCAAACAGTGAAGG
ATTTTTTTTTTCATGCTGCGAAGGTGCAAAATGCCTGGCTCGAGAACGAG
AAGCTCGCCGATCAGCAGCGGGGAAAAACCAAGGCGAAAGGTAACAAGGA
AATCCCA
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