mRNA_Ecto-sp13_S_contig702.18068.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig702.18068.1
Unique NamemRNA_Ecto-sp13_S_contig702.18068.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig702.18068.1 vs. uniprot
Match: A0A1X7TFE2_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFE2_AMPQE)

HSP 1 Score: 49.7 bits (117), Expect = 2.770e-5
Identity = 25/66 (37.88%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 VMESWLMAGLPISRLDDVRDLFRGLGVDMVGSSHLKQYLEFLQDEEKRRLSEVIGDEYYSVSFDGS 198
            V+E +L AG+PIS+LD++R+L     + +  SSH+  Y+  L  +EK+ + + I  +  SV FDG+
Sbjct:  166 VVEQFLYAGIPISKLDNLRNLLEENALRLTHSSHMMDYIPPLLKKEKQAVRQAIEGKNVSVCFDGT 231
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig702.18068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1X7TFE2_AMPQE2.770e-537.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig702contigEcto-sp13_S_contig702:22070..22267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.4394653-UTR-Ecto-sp13_S_contig702:22069..220721681463963.4394653-UTR-Ecto-sp13_S_contig702:22069..22072Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig702 22070..22072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.4502456-CDS-Ecto-sp13_S_contig702:22072..222671681463963.4502456-CDS-Ecto-sp13_S_contig702:22072..22267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig702 22073..22267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig702.18068.1prot_Ecto-sp13_S_contig702.18068.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig702 22073..22267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig702.18068.1

>prot_Ecto-sp13_S_contig702.18068.1 ID=prot_Ecto-sp13_S_contig702.18068.1|Name=mRNA_Ecto-sp13_S_contig702.18068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MESWLMAGLPISRLDDVRDLFRGLGVDMVGSSHLKQYLEFLQDEEKRRLS
EVIGDEYYSVSFDGS
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mRNA from alignment at Ecto-sp13_S_contig702:22070..22267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig702.18068.1 ID=mRNA_Ecto-sp13_S_contig702.18068.1|Name=mRNA_Ecto-sp13_S_contig702.18068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig702:22070..22267+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAATGGAGTCTTGGCTAATGGCCGGCCTTCCAATCTCCCGGTTGGATGA
CGTCCGCGACCTGTTCCGGGGGCTCGGTGTGGACATGGTGGGCAGCTCCC
ACCTCAAGCAGTACCTAGAGTTCCTCCAAGACGAAGAGAAGCGGAGGCTC
TCTGAGGTCATCGGCGACGAGTACTACAGCGTCAGCTTCGACGGCTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig702:22070..22267+

>mRNA_Ecto-sp13_S_contig702.18068.1 ID=mRNA_Ecto-sp13_S_contig702.18068.1|Name=mRNA_Ecto-sp13_S_contig702.18068.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig702:22070..22267+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCTTGGCTAATGGCCGGCCTTCCAATCTCCCGGTTGGATGACGT
CCGCGACCTGTTCCGGGGGCTCGGTGTGGACATGGTGGGCAGCTCCCACC
TCAAGCAGTACCTAGAGTTCCTCCAAGACGAAGAGAAGCGGAGGCTCTCT
GAGGTCATCGGCGACGAGTACTACAGCGTCAGCTTCGACGGCTCT
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