mRNA_Ecto-sp13_S_contig7019.18066.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7019.18066.1
Unique NamemRNA_Ecto-sp13_S_contig7019.18066.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7019.18066.1 vs. uniprot
Match: A0A6H5KJ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ15_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.280e-102
Identity = 269/307 (87.62%), Postives = 273/307 (88.93%), Query Frame = 1 
Query:   58 MADSPPVTRKRGRHNDGDRAVTRDRR--------------NAGSDWRESLRNSRQEEMEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREIEALVDMQVLQPEEMAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAEKEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVRGLEAEVMKRAGLEGKFDMTK 936
            M DSPPVTRKRGRHNDGDRAVTRDRR              NAGSDWRESLRN+RQEEMEKA+ADKRKKLVRAIPT IPGVSAVVRGDARSDIREIEALVDMQVLQPEE+APGAVQATPRPPMPKANQLEPKRARMARWKKDPSE+EKDMAKQREALKKAEKEDEQLEAER AWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXX  RVRG EAEVMKRAGLEGKFDMTK
Sbjct:    1 MVDSPPVTRKRGRHNDGDRAVTRDRRLVSIVRTIIIGVLWNAGSDWRESLRNARQEEMEKAIADKRKKLVRAIPTNIPGVSAVVRGDARSDIREIEALVDMQVLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEIEKDMAKQREALKKAEKEDEQLEAERHAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGTGKAVNDGRYRXXXXXXXXXE-RVRGFEAEVMKRAGLEGKFDMTK 306
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BLAST of mRNA_Ecto-sp13_S_contig7019.18066.1 vs. uniprot
Match: D7G695_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G695_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 3.510e-102
Identity = 254/286 (88.81%), Postives = 257/286 (89.86%), Query Frame = 1 
Query:   79 TRKRGRHNDGDRAVTRDRRNAGSDWRESLRNSRQEEMEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREIEALVDMQVLQPEEMAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAEKEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVRGLEAEVMKRAGLEGKFDMTK 936
            +R RGRHNDGDRAVTRDRRNAGSDWRESLRNSRQEEMEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREIEALVDMQVLQPEE+APGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAE+EDEQLEAERDAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  XXXXX         RVRGLE EVMKRAGLEGKFDMTK
Sbjct:   39 SRARGRHNDGDRAVTRDRRNAGSDWRESLRNSRQEEMEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREIEALVDMQVLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAEEEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSTGKAVDNGRFRTGGEXXXXXE--------RVRGLEVEVMKRAGLEGKFDMTK 316
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7019.18066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ15_9PHAE1.280e-10287.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G695_ECTSI3.510e-10288.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7019contigEcto-sp13_S_contig7019:2091..7277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size938
Hectar predicted targeting categoryother localisation
Exons5
Cds size936
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.209832-CDS-Ecto-sp13_S_contig7019:2090..21791681463963.209832-CDS-Ecto-sp13_S_contig7019:2090..2179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7019 2091..2179 +
1681463963.2229917-CDS-Ecto-sp13_S_contig7019:4464..45091681463963.2229917-CDS-Ecto-sp13_S_contig7019:4464..4509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7019 4465..4509 +
1681463963.238311-CDS-Ecto-sp13_S_contig7019:5439..56261681463963.238311-CDS-Ecto-sp13_S_contig7019:5439..5626Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7019 5440..5626 +
1681463963.2493212-CDS-Ecto-sp13_S_contig7019:6192..63811681463963.2493212-CDS-Ecto-sp13_S_contig7019:6192..6381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7019 6193..6381 +
1681463963.2654443-CDS-Ecto-sp13_S_contig7019:6849..72751681463963.2654443-CDS-Ecto-sp13_S_contig7019:6849..7275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7019 6850..7275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7019.18066.1prot_Ecto-sp13_S_contig7019.18066.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7019 2091..7275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7019.18066.1

>prot_Ecto-sp13_S_contig7019.18066.1 ID=prot_Ecto-sp13_S_contig7019.18066.1|Name=mRNA_Ecto-sp13_S_contig7019.18066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=312bp
STRSRETRCSSRGPKHSGSMADSPPVTRKRGRHNDGDRAVTRDRRNAGSD
WRESLRNSRQEEMEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREI
EALVDMQVLQPEEMAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEM
EKDMAKQREALKKAEKEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWS
PAAAAAAAAAAAPAAAAASSTTTSNESHVSGGDSDSSGDENVAAAGGAGG
GGGGSSNSSTAGGGSGDGTGKAVDDGRYRRGGEEEEEEERVRGLEAEVMK
RAGLEGKFDMTK
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mRNA from alignment at Ecto-sp13_S_contig7019:2091..7277+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7019.18066.1 ID=mRNA_Ecto-sp13_S_contig7019.18066.1|Name=mRNA_Ecto-sp13_S_contig7019.18066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5187bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7019:2091..7277+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCACACGGAGCAGAGAAACAAGGTGCAGCTCTCGAGGACCCAAGCACAG
CGGCAGCATGGCGGACAGCCCACCGGTGACTAGGAAGAGGTGAGCTCTGA
GTACCTTATCTAGCTTCCAGTTCCTCGCTGTTTGGGTCCTCGGGAAAGAG
CGAGAGGAAAGGAACCGGATTGTGTCATTCTCCAACACGGCTCCTAACTC
CAAACCCGAACAGCATCAGCAACAGCGGTTAGGTTGGGAGCATTCTGGCT
CTATGCAGGTCCCCCCATTGGACGCCTCTCAACCAGCCCGAAGATAACGC
CTGCAGGGCTGTTGCCAAGGAGGATGGTGGGATGACCTCGACCGTATCGG
TGGCTGTGGTTTTGGAGAGGCTGTGGTTATCGCGCCCACCAGCAGGAGCA
AGCAGTAGGATGAACACATGTTGTGTATGACGGATGTTGGCCACCAAGAC
TCGTTTCGGGCGAGGGTCCAGCGAGGTGCCCTAGGGTACACGGGGTGCGC
GCGAGAGTAAACGGACGGCTCAAGCCTCGGGTAGCACCACCTTCTGGTTG
TCCCTACAAGGGTGGGGTGTTGTCGGTGACACGGCGCCACGGCGTCATGT
GTTGTCGATGCCTCCGCGTGGGATCCACCTGCTGTAAATGATGGCGTCGA
AGACGAAATACTCGAACTTTTGACGACCTCGAAAGCAACAAACTGGCAAC
ATTGGCCGGAGCGGAGACACGCGCGCGAAGATTAGGCATGAATGAGTACA
AAGGAGCTAGTGTCGCGCAGAGACGGCGGCAATATGTCTTCTACGTCCCC
ATTTCGAGGCACGTAAAGTCGCATCCTAATCGTCGTGCGAAATCCATTCG
TAGTCTTATGTATGCGAGCTGCAAGTGCGGCGAAATTCCCCCGGCTGTTG
TTATCACCCTAAAAACCGAGCGACAGAGAAAAATCAACCAGTCAACCGCC
ACTTCCACCACCACCACGGTGCGACATGCCAAGATCTCACGTCGACAAGT
ATAGAGTGTTCCCTGAGTGGCGGCACGCAATTGAATGCGGGGTCCTCGAT
CATGTTTCTACAACGCGGCGATAAATAGTCGTGAAAATATGCTTTAACAA
GTCCAAACGTCAACTATCCGCGGAACCCCCTGTCATGATCTGCAATTATT
TTGTGGTCACGCCACTGGTATGGGGCCGTTTTGGATCCGGGTGCCCCCAG
CATCTTCATTATAGCGTGCAAACCCACCGATCGACTTGTTGGGATCAGTT
CGGTGAATTGAATCAGATCTGCACGCGTCAAAAATGACAACGAAAACATG
CTTTGCACCGCGTTGGGCGGGGAGTTGAGAGAGACCAACAGAACTGAAGC
CGCATCATGTTGGATCCTTCATAGATGACAAGATTCAACATTCCGTGCCT
GGCTTTTTGAAGTTGGGTACGCTCTTATCCTCCTTGTGACGCCAATCCGG
ACGGTTGTGGTTTGTTGCACCTAAGAGCACGAGGAAGTTAAAAAGCCGTT
TCACGTGCTCGTGCACTGGTTGTTTTGAGAGCCTGTGTAATAGCAGCAGG
GAACCTCGTTGCAGGGCACTCACTCGTGCTGTCTGCGGGGCGCACACGAG
CCAGTTCCGTTGCAGCTCGCCGAATCGCGTAGTCTTGCAGGGCTGTTACC
CGATACCTTATGGTCTTTCTTTTCAGGACGTTTGGATTTGGGTCCGGGGG
CCCCTGAAGACTACGCGTACAGACAGCAGTGTGGTGTGCTCATGGACGTA
GAAGACGGCACTAGGTCTTGGTTTCCTTTGAGTGGCCTGCCGTATGTGGC
TTGTTCATATGGCTGCTGTTGCTGCTGTATTCCACCAAACGTCTGATTCT
GACGAAATGCCCTGAAATATACATTTAGCGCATGGCCCGGCTGCTGGGCT
CTGTCATCGGCTTGCTACTAGAGTGGAACGGTATGCTCCGCTACTCTCCG
CATACCCCACGTCGTTGCAGCACTCATCGTATGAGCTCCAGTTTTTTGTT
GATGTTGTTACGCTACAGTACACGAAGAGAACAAACAGCAGAACACCGGG
TTTGCGCCAATCCTCGGACGGTATTCGTGATTTGACAGCAGCATATGTAT
GCTGTTAGCACGTGAGCATGCAGCGATCGGCTGCCGATGAAAAGGCCGCG
CAACTCTTGCTACAAGATCGCGTCGTACCCCAGCCGGTAGCAACAGCTTT
GCCACGCATTTTGTTGAGATAGCAGTGTCACGGCGATCAAAGCAGCATCC
GGTCGTGCGAGGTGAGAGACCAAGATCATTCGGCCACGCTGAGAATATCT
TGCGGTTTGCTGTCATGTCGCCGACCCTTGTTGATTTCTCGCTCCGCGGT
CGTTGTTGTTGTTTTGATCTGCAGGGGGAGGCACAACGATGGGGACAGGG
CTGTCACGAGGGACCGCAGGTTAGTTAGTATTGTCAGGGCATGCGGCATG
AAGGATTATTATTATTTGTGTTTTTTGTTTTTGTAGTTTCCTTCGGCCCG
TACACCACAATTACGTTCGTCAGGAAACTCGGAACAGCGTGCACTTTCGA
CGGGTTGCTGCCTGAGACAAACTGCAGCGGTGGGCGTGTTCGACGTTTGT
TTTTATCTGTCTCAAGACTTGTTTTTTTTCAACACCCACGCTGCCTCTGC
CTTGCACGCAGGTGTCTAAGCAGGCCTCCGTATGAAGTGTCCGCTGATCC
CCTAGCATACATGCAAATGTTGCAGGGTGATCCCAATTTGTTAGCTGCCG
TTGAATCGGTATACATCAGCTAAAAAGTATGTGAACAACTGGTCTTCGAT
GCCTCCAACTGTACGTTTAGAGAGCCTGTTTGTTCTCATTTTAGCCTTGT
AGGCAACGCAACCAAACATGTGCGGCGTAGTTGCTGTGTGTGCCCAACAA
GGACGAAGACAAGCACCTGCTGTGCGCACGTGGAAATGGTTGTCGATTTC
AAGTGTTTTTTTGGTTGCTGGCGTGTTGTGCTGCTCCGAGTTTGCCACTT
CGAAGTGACGTGTGCGGTTGTCGGTACACCCAGTGATGGGCCCGGTTCCG
CAACCCCTAGTGCCAGGAGGGAGTATGGTCGATATTCCGCTGTTCAGGGC
ATGTTGCCCGTTTAGCGATTATTGGTCGGGGTACAGCAGTGGTGCCTCGC
GATGTTGTGGCTGCTACACAGGGCATGTCGTTGAACAGGGGATCGGTCAA
CCTTGCCCACTACTGTACACGTCTGTCTGCTTGGCGTCAACCGCAGCTTC
TCCACCACGTCCACGGCCTTACCCTCCAATGGCGGTGTGAAAACACGTTC
GCGACCCTTAACGACAAGAAATCCCCTCGCGCGTGTCGTTCTTGTGCAGG
AACGCTGGCAGTGACTGGAGAGAGTCGCTGCGAAACTCCCGCCAAGAAGA
GATGGAGAAAGCGGTCGCCGACAAGCGCAAGAAGCTCGTCAGGGCCATTC
CCACCACCATCCCGGGCGTATCTGCGGTGGTGAGGGGTGACGCCAGGAGC
GACATTCGCGAAATCGAGGCGCTCGTGGACATGCAGGTATGCTCTCTCAT
TACAGGAGACGCTACCACTTGAGAACCTTTCATCTTTTGCCCCGAGATTC
TCGTTTCTTATTTCTCTATGGGGTACCCCAACAGCGAATATATATGTACG
TTTGAGCGTGCTGATAGGCTTATCGACTGAGCACGCATGTTCGATCGCCA
AGTTTTTTTGCTTTTTAGCCTGAATTTCGTAGCGCGTGTTCCGGTTTTTA
CGTGGTCGGGCGGTCTGACCTGCTAGTGCTGTTGTGCTTAGATGACCGTG
TGCGGACAAGATGGTGTATTTCTTCTTCCTGGTGAACTGCGGCACCCGAG
TTTTGTTCTTCTGGTTGTGTGATTCCGCTTTGCACCGATGGACGAATGCA
GGGGAGGCAGAAACCGTCGTTAGTGTGACGAGAACACTGAGGCGTTAACG
AGCTTCTCCGGCAGCATGTGCATTGATTATTGCTACTTAGGATTGTCATA
TGTCATGGGAAGCCACACGCCAAGGGCACACAGTCGCCTCTCGAAATCCT
AGTCCTTGCCATAGCTCAAAGTGCGCCCCAACCTCCCTTGTCTGTCGTAA
AGGTGCTGCAACCGGAAGAGATGGCTCCCGGCGCCGTGCAGGCTACCCCT
CGCCCCCCCATGCCCAAGGCCAATCAGCTGGAGCCCAAGCGGGCTAGGAT
GGCGCGGTGGAAGAAGGACCCTTCCGAGATGGAGAAGGACATGGCGAAAC
AACGGGAGGCGTTGAAGAAGGCGGAGAAGGAGGACGAGCAGGTACACCAG
TCGCTGACCCCCTGTTTTTAGGACAAATGGTGTTGTTCGCGCGTATGGTG
TCGAAGTTCTGAAGGACAAGCTGTTCGCTTGAGGGATACTCGACCCACTT
GGAGGAGATCGTGTTTCAGAGGCAGGACACTGCTGTGCCTGCCGTAAGGA
CGCTTGTTTCGAAGATTAACATCGTGAGTGTATGATAGAGGCAACAGCAC
CAAGAAACAGAGGTCACCGGACGTGCCTGTGTCTTCAATGTGTTGCACGC
AGAGCACTAGTTTCGGCAAACGAGATCTAGACGTATGAATGTATCATGAA
CAAATTCCGCGGAAACTTGTCAGAGTTGACACAGTGTGCTCATCGATTTG
TTGGTGACTCATTTTGTCGTTGTGCATCTAGCACGACCTACCACTCCTTG
ATCCCCCTTCCTCCCTGTCTGTGTCCGTCACATTGGGTTCGCTTTTTTTG
GTGCCATAGCTGGAAGCGGAGCGCGACGCATGGGAAAGATGGTACCTCGT
GCTACGCGCGCATCTCACGGCGGGCCGCCGACCCACTGCTACCTGGTCTC
CGGCCGCCGCTGCCGCTGCCGCTGCCGCCGCCGCCCCTGCCGCCGCTGCT
GCATCCAGCACCACCACTTCGAACGAGTCGCACGTGTCCGGCGGCGATTC
AGACTCGTCTGGGGACGAAAATGTTGCCGCCGCCGGTGGGGCAGGTGGCG
GCGGAGGCGGCAGCAGTAACAGCAGCACGGCCGGCGGCGGCAGTGGAGAC
GGCACGGGCAAGGCTGTCGACGACGGTCGTTACAGGAGGGGGGGGGAAGA
GGAGGAGGAGGAAGAGCGAGTGAGAGGCCTTGAGGCGGAGGTGATGAAGA
GGGCGGGACTGGAGGGGAAGTTCGACATGACCAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7019:2091..7277+

>mRNA_Ecto-sp13_S_contig7019.18066.1 ID=mRNA_Ecto-sp13_S_contig7019.18066.1|Name=mRNA_Ecto-sp13_S_contig7019.18066.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7019:2091..7277+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCACACGGAGCAGAGAAACAAGGTGCAGCTCTCGAGGACCCAAGCACAG
CGGCAGCATGGCGGACAGCCCACCGGTGACTAGGAAGAGGGGGAGGCACA
ACGATGGGGACAGGGCTGTCACGAGGGACCGCAGGAACGCTGGCAGTGAC
TGGAGAGAGTCGCTGCGAAACTCCCGCCAAGAAGAGATGGAGAAAGCGGT
CGCCGACAAGCGCAAGAAGCTCGTCAGGGCCATTCCCACCACCATCCCGG
GCGTATCTGCGGTGGTGAGGGGTGACGCCAGGAGCGACATTCGCGAAATC
GAGGCGCTCGTGGACATGCAGGTGCTGCAACCGGAAGAGATGGCTCCCGG
CGCCGTGCAGGCTACCCCTCGCCCCCCCATGCCCAAGGCCAATCAGCTGG
AGCCCAAGCGGGCTAGGATGGCGCGGTGGAAGAAGGACCCTTCCGAGATG
GAGAAGGACATGGCGAAACAACGGGAGGCGTTGAAGAAGGCGGAGAAGGA
GGACGAGCAGCTGGAAGCGGAGCGCGACGCATGGGAAAGATGGTACCTCG
TGCTACGCGCGCATCTCACGGCGGGCCGCCGACCCACTGCTACCTGGTCT
CCGGCCGCCGCTGCCGCTGCCGCTGCCGCCGCCGCCCCTGCCGCCGCTGC
TGCATCCAGCACCACCACTTCGAACGAGTCGCACGTGTCCGGCGGCGATT
CAGACTCGTCTGGGGACGAAAATGTTGCCGCCGCCGGTGGGGCAGGTGGC
GGCGGAGGCGGCAGCAGTAACAGCAGCACGGCCGGCGGCGGCAGTGGAGA
CGGCACGGGCAAGGCTGTCGACGACGGTCGTTACAGGAGGGGGGGGGAAG
AGGAGGAGGAGGAAGAGCGAGTGAGAGGCCTTGAGGCGGAGGTGATGAAG
AGGGCGGGACTGGAGGGGAAGTTCGACATGACCAAG
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