mRNA_Ecto-sp13_S_contig70182.18065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70182.18065.1
Unique NamemRNA_Ecto-sp13_S_contig70182.18065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: D8LKL6_ECTSI (Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 2.900e-24
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   10 KTGRINKNIDSKGGLATTAPPVVLLKRSSRWACVKNCGACCYLAPDERPDLA 165
            K GRINKN DSKGGLAT AP VVLLKRSSRWACVKNCGACCYLAPDERPDLA
Sbjct:  105 KKGRINKNTDSKGGLAT-APAVVLLKRSSRWACVKNCGACCYLAPDERPDLA 155
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: W7TMW6_9STRA (Uncharacterized protein family UPF0153 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMW6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.160e-7
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   34 IDSKGGLATTAPPVVLLKRSSRWACVKNCGACCYLAPDERPDL 162
            I +K    T+ P V  LK S +WACV NCGACCYLAP ERP L
Sbjct:  125 IHNKSVTPTSTPAV--LKVSKKWACVANCGACCYLAPSERPYL 165
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A7S3K3R1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.890e-7
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   79 LLKRSSRWACVKNCGACCYLAPDERPDL 162
            +LK++ RWACV+NCGACCYL P ER DL
Sbjct:   68 ILKKTKRWACVENCGACCYLEPSEREDL 95
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A845ZYW0_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A845ZYW0_9CYAN)

HSP 1 Score: 51.6 bits (122), Expect = 7.040e-7
Identity = 19/22 (86.36%), Postives = 21/22 (95.45%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDLA 165
            W CVKNCGACC+LAP+ERPDLA
Sbjct:    4 WQCVKNCGACCHLAPEERPDLA 25
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A0P8D9G0_9CYAN (Putative Fe-S-cluster oxidoreductase n=5 Tax=Phormidium TaxID=1198 RepID=A0A0P8D9G0_9CYAN)

HSP 1 Score: 51.6 bits (122), Expect = 8.540e-7
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDL 162
            W CVK+CGACCYLAPDERPDL
Sbjct:    4 WQCVKHCGACCYLAPDERPDL 24
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A168SCA6_9CYAN (Fe-S cluster protein n=1 Tax=Leptolyngbya valderiana BDU 20041 TaxID=322866 RepID=A0A168SCA6_9CYAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.610e-6
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDL 162
            W C+K CGACCYLAPDERPDL
Sbjct:    4 WQCIKQCGACCYLAPDERPDL 24
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A2W7AAG0_9CYAN (YkgJ family cysteine cluster protein (Fragment) n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A2W7AAG0_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-6
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDL 162
            W CVK+CGACC+LAPDERPDL
Sbjct:    4 WQCVKSCGACCFLAPDERPDL 24
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A2W4VUD1_9CYAN (Fe-S cluster protein n=1 Tax=Shackletoniella antarctica TaxID=268115 RepID=A0A2W4VUD1_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 2.860e-6
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDL 162
            W CVK+CGACC+LAPDERPDL
Sbjct:    4 WQCVKSCGACCFLAPDERPDL 24
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A2T2W634_9CYAN (Fe-S cluster protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T2W634_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 2.910e-6
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDL 162
            W CVK+CGACC+LAPDERPDL
Sbjct:    4 WQCVKSCGACCFLAPDERPDL 24
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BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Match: A0A8J7EIP6_9CYAN (YkgJ family cysteine cluster protein n=1 Tax=Nodosilinea sp. LEGE 06152 TaxID=2777966 RepID=A0A8J7EIP6_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 2.910e-6
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1 
Query:  100 WACVKNCGACCYLAPDERPDL 162
            W CVK+CGACC+LAPDERPDL
Sbjct:    4 WQCVKSCGACCFLAPDERPDL 24
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70182.18065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL6_ECTSI2.900e-2492.31Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpu... [more]
W7TMW6_9STRA3.160e-760.47Uncharacterized protein family UPF0153 n=1 Tax=Nan... [more]
A0A7S3K3R1_9STRA3.890e-771.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A845ZYW0_9CYAN7.040e-786.36YkgJ family cysteine cluster protein n=1 Tax=Lepto... [more]
A0A0P8D9G0_9CYAN8.540e-790.48Putative Fe-S-cluster oxidoreductase n=5 Tax=Phorm... [more]
A0A168SCA6_9CYAN1.610e-685.71Fe-S cluster protein n=1 Tax=Leptolyngbya valderia... [more]
A0A2W7AAG0_9CYAN2.860e-685.71YkgJ family cysteine cluster protein (Fragment) n=... [more]
A0A2W4VUD1_9CYAN2.860e-685.71Fe-S cluster protein n=1 Tax=Shackletoniella antar... [more]
A0A2T2W634_9CYAN2.910e-685.71Fe-S cluster protein n=2 Tax=unclassified Cyanobac... [more]
A0A8J7EIP6_9CYAN2.910e-685.71YkgJ family cysteine cluster protein n=1 Tax=Nodos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70182contigEcto-sp13_S_contig70182:489..662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.9
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D8LKL6
Model size174
KEGG koko:K06940
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Putative zinc- or iron-chelating domain
EggNOG OGs2RZ66@2759,COG0727@1
Cds size174
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.1770825-CDS-Ecto-sp13_S_contig70182:488..6621681463963.1770825-CDS-Ecto-sp13_S_contig70182:488..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70182 489..662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70182.18065.1prot_Ecto-sp13_S_contig70182.18065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70182 489..662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70182.18065.1

>prot_Ecto-sp13_S_contig70182.18065.1 ID=prot_Ecto-sp13_S_contig70182.18065.1|Name=mRNA_Ecto-sp13_S_contig70182.18065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MARKTGRINKNIDSKGGLATTAPPVVLLKRSSRWACVKNCGACCYLAPDE
RPDLAGV*
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mRNA from alignment at Ecto-sp13_S_contig70182:489..662-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70182.18065.1 ID=mRNA_Ecto-sp13_S_contig70182.18065.1|Name=mRNA_Ecto-sp13_S_contig70182.18065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70182:489..662- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGAAAAACAGGTAGAATAAACAAGAATATCGATAGCAAGGGTGG
GCTCGCTACCACTGCTCCACCGGTCGTCTTGTTGAAACGATCGAGTCGGT
GGGCGTGCGTCAAGAACTGTGGGGCCTGCTGCTACCTCGCCCCAGATGAG
AGGCCGGACTTGGCAGGTGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70182:489..662-

>mRNA_Ecto-sp13_S_contig70182.18065.1 ID=mRNA_Ecto-sp13_S_contig70182.18065.1|Name=mRNA_Ecto-sp13_S_contig70182.18065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70182:489..662- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGAAAAACAGGTAGAATAAACAAGAATATCGATAGCAAGGGTGG
GCTCGCTACCACTGCTCCACCGGTCGTCTTGTTGAAACGATCGAGTCGGT
GGGCGTGCGTCAAGAACTGTGGGGCCTGCTGCTACCTCGCCCCAGATGAG
AGGCCGGACTTGGCAGGTGTGTGA
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