mRNA_Ecto-sp13_S_contig7015.18063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7015.18063.1
Unique NamemRNA_Ecto-sp13_S_contig7015.18063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: D7FYD4_ECTSI (STI1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD4_ECTSI)

HSP 1 Score: 412 bits (1059), Expect = 7.240e-140
Identity = 227/250 (90.80%), Postives = 231/250 (92.40%), Query Frame = 1 
Query:    1 MAPRSVALLVLSCLASGLAFVGVGVTPKRAVSLHHLGRRNVAGNSRSSAVRPRVRSATAPLAMMAGEDGASXXXXXXXXXXXXXXXKTDPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA 750
            MA RSVALLVLSCLASG+AFVG+GVTPKR VSLH LGRRNVAGNSRSSAVRPRVRSATAPLAMMAGEDG S               KTDPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVE+LIEARSLGRADPSIIDDFNKENLENRMDPERAAGFA+DLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA
Sbjct:    1 MAARSVALLVLSCLASGMAFVGIGVTPKRWVSLH-LGRRNVAGNSRSSAVRPRVRSATAPLAMMAGEDGTSADGGQGAEEEDEDD-KTDPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVERLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFADDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA 248
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A7S2UTT4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTT4_9STRA)

HSP 1 Score: 154 bits (389), Expect = 3.260e-40
Identity = 82/160 (51.25%), Postives = 113/160 (70.62%), Query Frame = 1 
Query:  262 TDPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRM--DPERAAGFAEDL--LNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAM 729
            +D +   V +M+ SEIKAEL++R + + G+FEK+ELV  L EAR  GRADPSI+D FNK+  ENR+  DP+ A+        L+ E+LKD +A DGTLPGG+TPE    ++ +PE+M ++Q PK+QE+MKKVMA+GP AM  + GDPE   ++ KL AAM
Sbjct:   53 SDDEEVPVGEMKVSEIKAELELRKISWAGVFEKEELVRLLKEAREEGRADPSIVDQFNKQIFENRIQDDPDAASEKIPSPKDLDPEQLKDWSAGDGTLPGGLTPEAAQVLMRDPEIMAMLQMPKMQEVMKKVMAEGPSAMTSMMGDPEAMSMIMKLTAAM 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: R1E0J9_EMIHU (STI1 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E0J9_EMIHU)

HSP 1 Score: 151 bits (381), Expect = 2.580e-39
Identity = 79/158 (50.00%), Postives = 108/158 (68.35%), Query Frame = 1 
Query:  265 DPDA--EGVAKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMG 732
            D DA  E   +MR SE+KAELD+R   Y G+ EKDEL   L +ARS G ADP I+D FNK NLEN  +P+ A       ++ + + +  A+DG LPGGM+PE L K+  +PELM +++NPK+Q++MKKVM+ GPEA  E+  DP+ AE+L+K +AA G
Sbjct:   47 DEDATYEACMRMRVSELKAELDLRKQSYEGVMEKDELARMLADARSQGLADPDIVDSFNKANLENAYNPQPA-------VDPDAVAEAVASDGGLPGGMSPETLMKLTQDPELMAMLRNPKMQDVMKKVMSSGPEAAAEMMADPDVAEMLEKFKAATG 197
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A7S0INP6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0INP6_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 1.860e-32
Identity = 68/157 (43.31%), Postives = 100/157 (63.69%), Query Frame = 1 
Query:  265 DPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGG 735
            D   E   KM+ SE+KAELD+R V Y G FEK+E   +L  AR+ GRADP++ID+FN++ +E     + A          +   ++ A+DG LPGGM+PEML  ++  PEL+ ++ NPKLQE+MK VM  GP+  +E   DPE  E+L+K+++ + G
Sbjct:   67 DATFEACMKMKVSELKAELDLRKVNYEGCFEKEEFARRLASARASGRADPTLIDEFNRQAVERAWTADGAGSSMPPDF--QAATEVVASDGGLPGGMSPEMLQSLMQKPELLAMLSNPKLQEVMKTVMEGGPDGAKEFMDDPEVREMLEKVQSMIRG 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A7S4ET52_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ET52_CHRCT)

HSP 1 Score: 129 bits (324), Expect = 5.950e-31
Identity = 69/157 (43.95%), Postives = 99/157 (63.06%), Query Frame = 1 
Query:  259 KTDPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAM 729
            +TD        MRASEIKAELD+RGV Y   +EK+EL E+L +AR  G ADP I+  FN+ + +   +   A    +D+       D+TA DG+LPGG+TPE L +M  NPE+M L++NPK+QE+M +VM+ G     +   DPE +++LK+ +A M
Sbjct:   64 ETDSTLNACRAMRASEIKAELDLRGVAYADCYEKEELAERLAKARRSGEADPEILRKFNEASAQRAWE---ADATEQDVEPAAAAVDVTAGDGSLPGGLTPEKLLQMSQNPEMMALLRNPKMQEVMAEVMSKGEAGYAKFADDPEVSDMLKRFQAFM 217
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A7S2A2U0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2U0_TRICV)

HSP 1 Score: 127 bits (318), Expect = 6.140e-30
Identity = 74/158 (46.84%), Postives = 102/158 (64.56%), Query Frame = 1 
Query:  265 DPDAEGV--AKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEELQG-DPETAELLKKLEAAM 729
            D D E V   KM+ SEIKAEL+MRGV Y   F+++ L  +L+EARS GRADPSI+D FN++            G     ++++ L++    DGTLPGGM P+ML K++SNPELM L+Q+PK+QE MK +M +G EA+E+    D E  E++ KL   M
Sbjct:   84 DDDEEDVEPGKMKVSEIKAELEMRGVRYADCFDRESLEGRLLEARSTGRADPSIVDAFNQKG-----------GEGPPQIDDDVLQNAVGGDGTLPGGMPPDMLKKLMSNPELMGLLQSPKMQEGMKLMMTEGQEALEKAMAEDRELYEVIMKLNKVM 230
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A7S3WKN4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WKN4_9SPIT)

HSP 1 Score: 126 bits (317), Expect = 7.650e-30
Identity = 71/164 (43.29%), Postives = 108/164 (65.85%), Query Frame = 1 
Query:  271 DAEGVAK-------MRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERA--------AGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAME-ELQGDPETAELLKK 714
            DAE +A        M+ASEIKAELD+R + +  +FEK EL  +L  AR  GRADP+I+D FN+ ++E+  D   A        A   E+      ++D+TA+DG+LPGGM PE L  + ++PE+M +++NPK+QE++++VMA+GPEA++ + + D E  E+LKK
Sbjct:   63 DAEALASAVQACMAMKASEIKAELDLRKIPHDDLFEKAELASRLARARIAGRADPNILDSFNRASMESAWDASGAQDDIAASPAARGENADASVAVEDVTASDGSLPGGMQPEQLQALANDPEVMAMLRNPKMQEVLREVMANGPEALQTKFKDDAEVREMLKK 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A7S4MRL7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MRL7_9STRA)

HSP 1 Score: 126 bits (316), Expect = 9.770e-30
Identity = 65/128 (50.78%), Postives = 92/128 (71.88%), Query Frame = 1 
Query:  289 KMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAME 672
            KMR SE+KAELD+RGV Y+G F+K+ L  KL++AR+ G+A+P IIDDFNK  L+     E  AG  E  +++E ++ +   DGTLPGG+ P+ML K++SNPEL  L+Q+PK+QE M+ +M  G  A+E
Sbjct:   98 KMRVSELKAELDLRGVDYSGCFDKESLAAKLLQARATGKANPDIIDDFNKMRLD-----ETIAG-EETSISDEDIQQMVGGDGTLPGGLPPDMLKKLMSNPELTSLLQSPKMQEAMRLMMTGGQSALE 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: B8C8G9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8G9_THAPS)

HSP 1 Score: 123 bits (309), Expect = 7.180e-29
Identity = 69/160 (43.12%), Postives = 104/160 (65.00%), Query Frame = 1 
Query:  265 DPDAEGVAKMRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEE-LQGDPETAELLKKLEAAMGGMQ 741
            DP   G  +M+ SEIK+ELD+R V Y   F+++ L  +L EAR  G+ADPS+ID+FN+ NLE  +  E A    +++L     +     DGTLPGG+ P+ML  M+S+PEL+ ++++PK+QE+MK VM  G +A+E+ +  D E  E + KL + MG M+
Sbjct:   64 DPSLPG--QMKISEIKSELDLRKVNYNDCFDREALEIRLNEARCSGKADPSLIDEFNRRNLEANVKGEDALEVTDNML-----ESAVGGDGTLPGGLPPDMLKSMMSDPELVNMLRSPKMQEVMKLVMEGGQDALEDAMTNDKEAYECVTKLNSIMGNMK 216
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Match: A0A1Z5KT68_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KT68_FISSO)

HSP 1 Score: 122 bits (307), Expect = 1.300e-28
Identity = 66/147 (44.90%), Postives = 97/147 (65.99%), Query Frame = 1 
Query:  292 MRASEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLENRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELMVLMQNPKLQEIMKKVMADGPEAMEE-LQGDPETAELLKKLEAAM 729
            MR SEIKAELD+R + Y   F+K+ LVE+L  AR+ G ADPSI++ FN++ LE   DP +      D      ++   A DGT+PGG+TP+M  K+++NPELM ++Q+ K+QE M  +M  G + +E+ L+ DPE  E +KKL++ M
Sbjct:   70 MRVSEIKAELDLRKISYADCFDKESLVERLQGARAKGLADPSILEKFNRQKLEADFDPSKKVEIQPD-----DIEAAVANDGTIPGGLTPDMFQKLIANPELMAMLQSTKMQEAMTLMMTGGRDELEKKLKEDPELQETVKKLDSIM 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7015.18063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FYD4_ECTSI7.240e-14090.80STI1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2UTT4_9STRA3.260e-4051.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1E0J9_EMIHU2.580e-3950.00STI1 domain-containing protein n=2 Tax=Emiliania h... [more]
A0A7S0INP6_9EUKA1.860e-3243.31Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S4ET52_CHRCT5.950e-3143.95Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2A2U0_TRICV6.140e-3046.84Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3WKN4_9SPIT7.650e-3043.29Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4MRL7_9STRA9.770e-3050.78Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
B8C8G9_THAPS7.180e-2943.13Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1Z5KT68_FISSO1.300e-2844.90Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7015contigEcto-sp13_S_contig7015:1603..5629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score416.8
Seed ortholog evalue7.3e-114
Seed eggNOG ortholog2880.D7FYD4
Model size1564
Hectar predicted targeting categorychloroplast
Exons6
EggNOG OGs2E109@1,2S8D4@2759
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-08_003610.1
Cds size753
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7015.18063.1prot_Ecto-sp13_S_contig7015.18063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7015 2414..5629 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.874051-UTR-Ecto-sp13_S_contig7015:1602..24131681463962.874051-UTR-Ecto-sp13_S_contig7015:1602..2413Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7015 1603..2413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.8866408-CDS-Ecto-sp13_S_contig7015:2413..25241681463962.8866408-CDS-Ecto-sp13_S_contig7015:2413..2524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7015 2414..2524 -
1681463962.8986452-CDS-Ecto-sp13_S_contig7015:3014..31061681463962.8986452-CDS-Ecto-sp13_S_contig7015:3014..3106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7015 3015..3106 -
1681463962.9098523-CDS-Ecto-sp13_S_contig7015:3496..35911681463962.9098523-CDS-Ecto-sp13_S_contig7015:3496..3591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7015 3497..3591 -
1681463962.9331017-CDS-Ecto-sp13_S_contig7015:4008..41031681463962.9331017-CDS-Ecto-sp13_S_contig7015:4008..4103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7015 4009..4103 -
1681463962.9472592-CDS-Ecto-sp13_S_contig7015:4503..47771681463962.9472592-CDS-Ecto-sp13_S_contig7015:4503..4777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7015 4504..4777 -
1681463962.9597507-CDS-Ecto-sp13_S_contig7015:5543..56291681463962.9597507-CDS-Ecto-sp13_S_contig7015:5543..5629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7015 5544..5629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7015.18063.1

>prot_Ecto-sp13_S_contig7015.18063.1 ID=prot_Ecto-sp13_S_contig7015.18063.1|Name=mRNA_Ecto-sp13_S_contig7015.18063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
MAPRSVALLVLSCLASGLAFVGVGVTPKRAVSLHHLGRRNVAGNSRSSAV
RPRVRSATAPLAMMAGEDGASGDGGQGAEDDDDDDDKTDPDAEGVAKMRA
SEIKAELDMRGVGYTGIFEKDELVEKLIEARSLGRADPSIIDDFNKENLE
NRMDPERAAGFAEDLLNEEKLKDLTAADGTLPGGMTPEMLSKMVSNPELM
VLMQNPKLQEIMKKVMADGPEAMEELQGDPETAELLKKLEAAMGGMQPQA
*
back to top

mRNA from alignment at Ecto-sp13_S_contig7015:1603..5629-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7015.18063.1 ID=mRNA_Ecto-sp13_S_contig7015.18063.1|Name=mRNA_Ecto-sp13_S_contig7015.18063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4027bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7015:1603..5629- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCCTCGCTCTGTGGCCCTTCTCGTCCTTTCGTGCCTCGCATCGGG
CTTGGCCTTCGTGGGCGTCGGCGTCACTCCCAAGAGGTGTGCGCACGACT
AGTGCAAAGCGAAGATCTGCGGTGCTCATTCGCCTGTCAAACCTACCATC
ATCGTACAGCAGTAGGCATCGTCTACATGTCACTGCTGCTGCTGTACTGC
TGCTGCATCTGCCGCACAAGATCTCCCCCGACTTGCAGTGTTAGATGCGA
GCCAGTAAACAAAGATCCATAGGCGTTCGCCAACACGTGCGAGCACCACG
TTGCTTGTTGAAGTGCTGTCGAACGCTTGTGCAATTCTAGAAAAAAAAAA
TGGCCTGTAAGAGCAGTTTTGAACAGCCAACCAATGGGCGGCTTCGAAAG
CCGTTCAAAAAACACCGCCGACGCTATATTAACATGATTGTTTCACTGTC
AATATATCTCAGACTTTCTATTTCTGTAGATAGAAAATATATGAACACGT
CTTATACATGCCGAAGAGAACACAGCTCTTTCTCCCCACCCGGTAAGTGT
AGGAACATGAATCATTGCTGACACAACGTGTGTATTTTGTGGGTTTTATT
TTTTTCTCTGTTTCTTTTCCCTAGATGGGCTATTTATTGCCCACAGGTAC
AGCAGTAGATACCGGACGAACTGGTCTGGTTATTTGTTCAAGTCTACACT
ACAGCTGTTGCGTAATATCGGAAACACTGCGCCACCGCTACAGAGAAGTT
TCAATGTTTGAATGATGGTGGTTCAACAACAGCCGTTTCCCAGCGATTGT
CCCATCACAACGCAATGCCCACCTATTGATGCGTACAACGCACCTGCGGT
AGGGCGGTGTCCCTCCATCATCTAGGGAGAAGAAATGTCGCCGGCAACTC
CCGATCGTCGGCCGTAAGACCACGCGTTCGATCCGCGACGGCGCCCTTGG
CGATGATGGCCGGGGAGGACGGCGCGTCGGGGGATGGCGGACAAGGAGCG
GAGGACGACGACGACGACGACGACAAGACTGACCCGGACGCAGAGGGAGT
TGCGAAGATGCGGGCGAGCGAGATCAAGGCGGAGCTCGACATGCGAGGCG
TAGGCTACACCGGAATATTCGAGAAGGTATGCATGCACGTGTTGCAAAGA
GGAGGATGTGGGTTGGTTGTGGTTGGCGCGATGCGCGCGACAATACTGTG
TAGTGCTTTCGCCGTCCATGTCAAGTGTCGTGTTTTTTTTTACACGACGG
CAACACCGACGGCCGTGGCTGCAGTATAGCTGGTCGGTGAGATACCCTTC
CCCCAAGTCGATTTCAGCGTGCGCCCAGATCATCCCGTCCGGTAACTCCG
CACATTCTGAGGGTCGTAGCTGCACCCATAATTGAAGTGTTGCGTTGTGT
GCAATGTCTAGTTCGTCGCCAAGAGCCAATAGCAAGTAGCTGAAGGACGC
CGTGGCCGTACGTCCCGCCCTTCGCGATCTTCTATTTCCCATCTCCTCCT
TGACGTGTCTTCTTTTTTTTGTTCAGGACGAGCTCGTGGAGAAGTTGATC
GAGGCACGGAGCTTGGGACGAGCAGACCCGTCCATCATCGACGACTTCAA
CAAGGAGAACCTCGAGAACAGGTGAGAGAGAGGATGGCCGCCTCCGCCGC
CTCCGCCGCCGCCGCCGCAATACCCTATCGCAACACATTGCTGGCCTTGC
GGGTGTGTGTTACTTGTTGTTGCTGTTGTTGTTGTTGCTGTTGTTGTCTT
CACATGACTGAGAACTGTTCCGACCTATCTATCCACTACCTGCCTCTGTC
CGTACTTTCGGCACTACGTGGCGGTAGATTTTCTTCTTGGTCGTTGTGGA
AGCGATGAATGTAAACGTGTGGAGAACAGGTGACGAACCGATTGCAACAT
GCATCTCTGGCCTTGCGTGTGTTACTTTATGGCTGGTTAAGTTGTTTTTT
TTCCTTGGACATGGATGAAACGGTCCTCTGAATATGACCGCTTATTCATC
CTCTCTTCGCTGTTTTCCTTCCTTCCCTCCTTCGAAAGGATGGATCCCGA
GAGAGCTGCCGGATTCGCAGAGGACCTCTTGAACGAGGAGAAGCTGAAGG
ACCTCACCGCGGCCGACGGCACCCTGCCGGGAGGTGCGTTTCAGTTGTTT
GCATTGTTATTTATTTGCACGGGTGCACTAACGAAGACAGCTGCAGGGGC
ACAACGGCTATGACAGTAGCAAAGGAGGTGCAATATAATGGCGCGCGCCT
GATCGCGCGCCTGACAAGCATCCACTGCTCGGGTGGCGTACAGCTGTGCG
TGCCGAGACAGATTGCTGTGCGGGTGTGTTGTGCTTTTGTCTACCCTCCT
TCCCTTTGGGAAGACCTGGTGTTCCTTGCACATAGTTCATCCCCAGCCGT
GACGTTGTCTAGACTCGTCCACCCGCCTCGGGGCGCCAATCTTGAATCCC
AAAAAATCGCCCACCAATGCACTTCCCTGTGCTCACTCTGGCCCGCTCAA
CCGTTCTTGGCCTTTCGGCACAGGAATGACCCCTGAGATGCTGTCCAAGA
TGGTTTCCAACCCGGAGCTGATGGTGCTCATGCAGAACCCCAAGCTCCAG
GAAATCATGAAGAAGGTGAGAGGGGAACCAATCGTCGAGGCACGAGCTTG
ATCTATTGCCGAGCATTGCGTCTCCTGATGATGTTATTCTGGTGTCACGG
CCTCTCGTTTCCTTGCGCTGCTGTCTCGGCCCACCCATCGACGGGGAGGG
TAAAGTCCGGCTGACACGGGGCGATGCGGCAGATTTAGAGAAGCAGCCGT
GTATTTTCCGGTGGGAATTTATAAGTGGTCGATGGGGTTGAGTGTTAGCT
CATTGGTGTGCTTGCTCTTCTGTTGATCTTTTGCTTGAGATGCTTGAACT
TGTTGCTCGGGTCGTCGGTCTCTGGGTGTCATGAACGATCGGTTCCTCGG
CCGCATGTTTTTTCCTTCCCCTCTGCATACAGCCCATCTCTCGCAGACGC
CGCACACTCGACCACCCCAGCATTTACTCACACACAAGAACGGCGGTACA
TGCGCCCCGTCCTGTTGTTGCTTGCTGACGCTTGTTTGTCCATTGGATTG
GTCAGGTCATGGCCGACGGGCCGGAGGCGATGGAAGAACTCCAGGGCGAC
CCGGAGACGGCGGAGTTGCTAAAGAAGCTCGAAGCGGCCATGGGTGGCAT
GCAGCCCCAGGCGTAGGACTGCTTGCCAGAGAGGAAATGGGATTGTAGTG
CGGGCGGGTTGAACACCACGCGGCTAGTTTCTCCCAATACGTGTGTTTTT
CATGGATGAGCTCCGGTGTATGTGGCCCACCATCTTGCGTGACCCACGTT
TTTTCGCCAATATGTGTACCACTCGTTCTGAAGGATTCTTTGGCTGAAGA
GCACGGGTGGTGTGGCAGAGCGCGCACGGTGAAGCTCATGACCAGTTTGG
AGGAGGCGTGTCGGTGACAGGGGTCGTGGTCTCTTCTACTCTTGAGGCTG
TCTTGTTTTGCGAGCCGCCGAACCGGGAACCAGGGTGTTGGACGGCGTTG
AAGGTCTTCGTTTTGGTGGCCGGTAGCTGATGTGACACGACGTGGAGATT
GGCTCACGTGAACGAATGCAAGGTCCGTGGACAGCCTTCAGCGGCATACC
GACCGACCTACACGTCGGATACTTACAGCAGTAGCCAACCAATCCATGCG
TTGGATTGAAAGAAGGTCCATTAGGATACGGATTTGACTACAGGGGTCCC
TTGGTTTCCAAGCAGAGTGGTGTTGTGGAATGTGTTCGCCATGTACACGG
TATTAGCGTTGGTAGCGCTTCACACCCTCCCTCAGTTCGCACGTTTTACT
CATGGCTGCTGCCTGCTGCTTCGGGGACAGGAACCTGCAAAGCGTCGTGA
ACAGAAACGATCTGCGTTCCTGTCAGCCCGCCTGGCGCGTGTTGCTTGTT
TTTAGCCGCTAGACAACGTGCGAACGTGTACGCCCGGTCGTTCGACTACC
ATGACAGAGACCGACGCCACGAGACAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7015:1603..5629-

>mRNA_Ecto-sp13_S_contig7015.18063.1 ID=mRNA_Ecto-sp13_S_contig7015.18063.1|Name=mRNA_Ecto-sp13_S_contig7015.18063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7015:1603..5629- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCCTCGCTCTGTGGCCCTTCTCGTCCTTTCGTGCCTCGCATCGGG
CTTGGCCTTCGTGGGCGTCGGCGTCACTCCCAAGAGGGCGGTGTCCCTCC
ATCATCTAGGGAGAAGAAATGTCGCCGGCAACTCCCGATCGTCGGCCGTA
AGACCACGCGTTCGATCCGCGACGGCGCCCTTGGCGATGATGGCCGGGGA
GGACGGCGCGTCGGGGGATGGCGGACAAGGAGCGGAGGACGACGACGACG
ACGACGACAAGACTGACCCGGACGCAGAGGGAGTTGCGAAGATGCGGGCG
AGCGAGATCAAGGCGGAGCTCGACATGCGAGGCGTAGGCTACACCGGAAT
ATTCGAGAAGGACGAGCTCGTGGAGAAGTTGATCGAGGCACGGAGCTTGG
GACGAGCAGACCCGTCCATCATCGACGACTTCAACAAGGAGAACCTCGAG
AACAGGATGGATCCCGAGAGAGCTGCCGGATTCGCAGAGGACCTCTTGAA
CGAGGAGAAGCTGAAGGACCTCACCGCGGCCGACGGCACCCTGCCGGGAG
GAATGACCCCTGAGATGCTGTCCAAGATGGTTTCCAACCCGGAGCTGATG
GTGCTCATGCAGAACCCCAAGCTCCAGGAAATCATGAAGAAGGTCATGGC
CGACGGGCCGGAGGCGATGGAAGAACTCCAGGGCGACCCGGAGACGGCGG
AGTTGCTAAAGAAGCTCGAAGCGGCCATGGGTGGCATGCAGCCCCAGGCG
TAG
back to top