mRNA_Ecto-sp13_S_contig7011.18062.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7011.18062.1
Unique NamemRNA_Ecto-sp13_S_contig7011.18062.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 582 bits (1501), Expect = 1.820e-204
Identity = 283/322 (87.89%), Postives = 302/322 (93.79%), Query Frame = 3 
Query:    9 MGKSGVALLALAPGSVMVGAANLRQNEMVVQYATSASPPTRSHASRHLYDSDTSKYEYIGCFTDSQEDRVLDDVLTSHDDMSTEKCYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKIGGSTENSPSXXXXXXXDDMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLPNPDNSC 974
            MGKSGVALLALAPGSVMVGAANLRQNEMVVQ+ATSASPPTRSHASRHLYDSDTSKYEYIGCFTDSQEDR+LDD+LTS  DMSTEKCYEHC+ MGAEYMATQWA+ECFCSNNKDLEYDRH   GS AECDMSCTGVEGETCGG+HAFDLYK+GGS +N PSXXXXXXXDDMAGLLDLHNEARCVH ADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHST +QRY +GENLF CWG+DTCYNH+ AME+LYV+EVQFD VTDYIGHATQILWKSTK VGCVLAGC+N G PYTFLVCQYDPAGNMG D +YR+EVGLP+P+NSC
Sbjct:    1 MGKSGVALLALAPGSVMVGAANLRQNEMVVQHATSASPPTRSHASRHLYDSDTSKYEYIGCFTDSQEDRILDDMLTSRTDMSTEKCYEHCMEMGAEYMATQWAQECFCSNNKDLEYDRH---GSGAECDMSCTGVEGETCGGNHAFDLYKLGGSADNPPSXXXXXXXDDMAGLLDLHNEARCVHSADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTREQRYGYGENLFVCWGTDTCYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEVGLPDPNNSC 319
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 1.780e-131
Identity = 187/236 (79.24%), Postives = 198/236 (83.90%), Query Frame = 3 
Query:  279 VGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTG----VEGETCGGDHAFDLYKIGGSTENSPSXXXXXXXDDMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLPNPDNSC 974
            + + AEYMATQWA ECFCS NKDL+YDRHE   S AEC+M C+G       ETCGGDHAFDLYKIGGSTENSPS       DDM GLLDLHNEARCVH ADPLGWSDPVTSSAAEHA RLTDQCTSSLFHST DQRY +GENLF CWG+DTCYNHE AME LYV+EVQF AVTDYIGHATQILWKSTKKVGCVLA CTN G PYTFLVCQYDPAGNMG D +Y +EVGLPNP+NSC
Sbjct:    1 MDLDAEYMATQWAVECFCSKNKDLKYDRHEEHESAAECNMMCSGGAEEETEETCGGDHAFDLYKIGGSTENSPSPSP----DDMTGLLDLHNEARCVHGADPLGWSDPVTSSAAEHAARLTDQCTSSLFHSTTDQRYGYGENLFMCWGTDTCYNHEYAMEKLYVEEVQFGAVTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDPAGNMGGDKEYIEEVGLPNPENSC 232
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.820e-67
Identity = 107/154 (69.48%), Postives = 124/154 (80.52%), Query Frame = 3 
Query:  513 DMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLPNPDNSC 974
            DM  L+DLHNEARCVH+ADPL WS  V SSAAEHA RLT QC+SSLFHST++QRY +GENL+ CWGSD+CY+HE AME LY  EVQFD+V  Y GHATQILWK+T++VGCV+A CTN G PYTFLVCQYDP GN G    Y ++VGLP+   SC
Sbjct:  341 DMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQCSSSLFHSTQEQRYGYGENLYMCWGSDSCYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPPGNYG--GQYEEQVGLPDSGKSC 492
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 2.950e-66
Identity = 105/154 (68.18%), Postives = 122/154 (79.22%), Query Frame = 3 
Query:  513 DMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLPNPDNSC 974
            DM  L+DLHNEARCVH+ADPL WS  V SSAAEHA RLT QC+S+LFHST++QRY +GENL+ CWGSD+CY+HE AME LY  EVQ D+V  Y GHATQILWKST++VGCV+A CTN G PY FLVCQYDP GN G    Y ++VGLP+   SC
Sbjct:  240 DMTELVDLHNEARCVHNADPLTWSSTVASSAAEHAERLTAQCSSNLFHSTQEQRYGYGENLYMCWGSDSCYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYG--GQYEEQVGLPDSGKSC 391
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 6.390e-64
Identity = 141/361 (39.06%), Postives = 185/361 (51.25%), Query Frame = 3 
Query:   69 ANLRQNEM------VVQYATSASPPTRSHASRHLYDSDTSK----------YE-YIGCFTDSQEDRVLDDVLTSHDDMSTEKCYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKIGGSTENSPSXXXXXXXDD------------------------------MAGLLD------------LHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLPNPDNSC 974
            ANLR   +      VVQ+ATSA+PPTR  ASRHL DSD S           +E Y+GCF D ++  +L+    S    + E+C+ HC   GA ++  ++  +C C   ++ +Y  +                 GE      AFDLY +GG  ++S S                                       +  L D            L+  + CVH+ADPL WS  V SSAAEHA  LT QC SSLFHST++QRY +G NL+  WGSD+CY+H+ A + LY  EVQ D+V  Y GHATQILWK+ ++VGC  A CTN G P+ FLVCQYDP GN G    Y ++VGLP+   SC
Sbjct:   28 ANLRTTNILDSSPTVVQHATSATPPTRQ-ASRHLRDSDDSSSGSDSNGYSPWELYVGCFQDDEQSTLLEFGFISGG-FNVERCFMHCTDEGATFLGLKYGFQCSCDFGQEEDYTLN---------------GPGERLR--WAFDLYSLGGGDDSSTSVTSLPTASSTGFPMPTXXXXXXXXPSTSSLWHPVLRCPRLLLLRDHSDVFPSFPPRHLYTTSWCVHNADPLTWSSTVASSAAEHAEGLTAQCFSSLFHSTQEQRYGYGANLYIRWGSDSCYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCTNGGTPHAFLVCQYDPPGNSG--GQYEEQVGLPDSRKSC 367
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.160e-48
Identity = 104/270 (38.52%), Postives = 146/270 (54.07%), Query Frame = 3 
Query:  162 DTSKYEYIGCFTDSQED---RVLDDVLTSHDDMSTEKCYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKIGGSTENSPSXXXXXXXD--DMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLP 956
            +TS YEYI C+ D  E+   R +DD   S++ M+ E CYEHC   G ++M  Q+ REC+C   +  E  RH + G    CD  C G +   CGG  +FDLY IG   E  P+       D  +   LLDLHNEARCVH A+PL W + +  +A  HA  LT +        ++   + +GENL+ C+G+  C  ++  ++ +Y   V    VT+Y   A ++LW ST K+GC ++ C    +    LVC YDP G+ GD A    EVGLP
Sbjct:  131 ETSSYEYIDCYADEGEEGQGRAMDDGFRSNE-MTPELCYEHCSSNGYDFMGLQYGRECYCGTEE--EEKRHVQYGPGT-CDHPCKGDDNLVCGGFWSFDLYYIG---ETGPADAGDSVDDSSEKQVLLDLHNEARCVHGAEPLAWDETMEETARGHAEELTSRQNCGYLFWSDVTAHGYGENLYLCYGAADCMMYDGVLDTMYDYAVDDGPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLP 393
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 7.640e-43
Identity = 94/248 (37.90%), Postives = 133/248 (53.63%), Query Frame = 3 
Query:  219 LDDVLTSHDDMSTEKCYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKIGGSTENSPSXXXXXXXD--DMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLP 956
            +DD   S++ M+ E CYEHC   G ++M  Q+ REC+C   +  E  RH + G    CD  C G +   CGG  +FDLY IG   E  P+       D  +   LLDLHNEARCVH A+PL W + +  +A  HA  LT +        ++   + +GENL+ C+G+  C  ++  ++ +Y   V    VT+Y   A ++LW ST K+GC ++ C    +    LVC YDP G+ GD A    EVGLP
Sbjct:    1 MDDGFRSNE-MTPELCYEHCSSNGYDFMGLQYGRECYCGTEE--EEKRHVQYGPGT-CDHPCKGDDNLVCGGFWSFDLYYIG---ETGPADAGDSVDDSSEKQVLLDLHNEARCVHGAEPLAWDETMEETARGHAEELTSRQNCGYLFWSDVTAHGYGENLYLCYGAADCMMYDGVLDTMYDYAVDDGPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLP 241
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 5.870e-42
Identity = 89/233 (38.20%), Postives = 125/233 (53.65%), Query Frame = 3 
Query:  264 CYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKIGGSTENSPSXXXXXXXD--DMAGLLDLHNEARCVHDADPLGWSDPVTSSAAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENLYVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYDPAGNMGDDADYRKEVGLP 956
            CYEHC   G ++M  Q+ REC+C   +  E  RH + G    CD  C G +   CGG  +FDLY IG   E  P+       D  +   LLDLHNEARCVH A+PL W + +  +A +HA  LT +        ++   + +GENL+ C+G+  C  ++  ++ +Y   V    VT+Y   A ++LW ST K+GC ++ C    +    LVC YDP G+ GD A    EVGLP
Sbjct:   35 CYEHCSSNGYDFMGLQYGRECYCGTEE--EEKRHVQYGPGT-CDHPCKGDDNLVCGGFWSFDLYYIG---ETGPADAGDSVDDSSEKQVLLDLHNEARCVHGAEPLAWDETMEETARDHAEELTSRQNCGYLFWSDVTAHGYGENLYLCYGAADCMMYDGVLDTMYDYAVDDGPVTEYDIRARRMLWASTTKLGCAISSCVYQYIDVEVLVCNYDPIGDYGDPAAIEVEVGLP 261
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: A0A6H5KHF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.580e-29
Identity = 64/105 (60.95%), Postives = 79/105 (75.24%), Query Frame = 3 
Query:  174 YEYIGCFTDSQEDRVLDDVLTSHDDMSTEKCYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKIGGSTENSPS 488
            YEY+GC+TD Q+DRVL D L S D M+ + CYE+C  MGA YMATQ+A ECFCS ++DL+Y+RH     TA C+M C G EGETCGG++AFDLYKI  S  NSP+
Sbjct:   21 YEYVGCYTDRQDDRVLGDKLDS-DLMTADFCYEYCSEMGAAYMATQYAFECFCSADEDLDYERH----GTAMCNMGCLGDEGETCGGENAFDLYKIMPSM-NSPT 119
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BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.310e-25
Identity = 57/96 (59.38%), Postives = 74/96 (77.08%), Query Frame = 3 
Query:  174 YEYIGCFTDSQEDRVLDDVLTSHDDMSTEKCYEHCVGMGAEYMATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDLYKI 461
            YEY+GC+TD Q+DR+L D L S D M+ + CYE+C  +GA YMATQ+A ECFCS ++DL+Y+RH     TA CD +C G EGETCGG++AFDLY+I
Sbjct:  334 YEYVGCYTDRQDDRILGDKLDS-DLMTADFCYEYCSEIGAAYMATQYAFECFCSADEDLDYERH----GTAMCDKACRGDEGETCGGENAFDLYRI 424
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7011.18062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJW7_ECTSI1.820e-20487.89Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
A0A6H5KK50_9PHAE1.780e-13179.24SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJX3_ECTSI3.820e-6769.48Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
A0A6H5JZI7_9PHAE2.950e-6668.18SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCL1_9PHAE6.390e-6439.06SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G7J6_ECTSI1.160e-4838.52Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
D8LED1_ECTSI7.640e-4337.90PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D8LED3_ECTSI5.870e-4238.20WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
A0A6H5KHF5_9PHAE1.580e-2960.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI1.310e-2559.38EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7011contigEcto-sp13_S_contig7011:1795..7097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score235.7
Seed ortholog evalue3e-59
Seed eggNOG ortholog2880.D8LJW8
Model size1826
KEGG koko:K19919,ko:K20412
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
Cds size975
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04090,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7011.18062.1prot_Ecto-sp13_S_contig7011.18062.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7011 2644..7095 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.7460725-UTR-Ecto-sp13_S_contig7011:1794..26431681463962.7460725-UTR-Ecto-sp13_S_contig7011:1794..2643Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7011 1795..2643 -
1681463962.8298728-UTR-Ecto-sp13_S_contig7011:7095..70971681463962.8298728-UTR-Ecto-sp13_S_contig7011:7095..7097Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7011 7096..7097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.757067-CDS-Ecto-sp13_S_contig7011:2643..27131681463962.757067-CDS-Ecto-sp13_S_contig7011:2643..2713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 2644..2713 -
1681463962.7663097-CDS-Ecto-sp13_S_contig7011:2960..31141681463962.7663097-CDS-Ecto-sp13_S_contig7011:2960..3114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 2961..3114 -
1681463962.7765439-CDS-Ecto-sp13_S_contig7011:3424..36271681463962.7765439-CDS-Ecto-sp13_S_contig7011:3424..3627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 3425..3627 -
1681463962.7872906-CDS-Ecto-sp13_S_contig7011:3922..40561681463962.7872906-CDS-Ecto-sp13_S_contig7011:3922..4056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 3923..4056 -
1681463962.797927-CDS-Ecto-sp13_S_contig7011:4395..45511681463962.797927-CDS-Ecto-sp13_S_contig7011:4395..4551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 4396..4551 -
1681463962.8087397-CDS-Ecto-sp13_S_contig7011:5735..58521681463962.8087397-CDS-Ecto-sp13_S_contig7011:5735..5852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 5736..5852 -
1681463962.8188317-CDS-Ecto-sp13_S_contig7011:6954..70951681463962.8188317-CDS-Ecto-sp13_S_contig7011:6954..7095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7011 6955..7095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7011.18062.1

>prot_Ecto-sp13_S_contig7011.18062.1 ID=prot_Ecto-sp13_S_contig7011.18062.1|Name=mRNA_Ecto-sp13_S_contig7011.18062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=325bp
MIMGKSGVALLALAPGSVMVGAANLRQNEMVVQYATSASPPTRSHASRHL
YDSDTSKYEYIGCFTDSQEDRVLDDVLTSHDDMSTEKCYEHCVGMGAEYM
ATQWARECFCSNNKDLEYDRHERDGSTAECDMSCTGVEGETCGGDHAFDL
YKIGGSTENSPSPSPSPSPDDMAGLLDLHNEARCVHDADPLGWSDPVTSS
AAEHAVRLTDQCTSSLFHSTEDQRYDFGENLFACWGSDTCYNHENAMENL
YVKEVQFDAVTDYIGHATQILWKSTKKVGCVLAGCTNSGVPYTFLVCQYD
PAGNMGDDADYRKEVGLPNPDNSC*
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mRNA from alignment at Ecto-sp13_S_contig7011:1795..7097-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7011.18062.1 ID=mRNA_Ecto-sp13_S_contig7011.18062.1|Name=mRNA_Ecto-sp13_S_contig7011.18062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7011:1795..7097- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATGATCATGGGTAAGTCAGGCGTCGCGCTGCTTGCGCTGGCCCCCGGG
AGCGTGATGGTCGGGGCGGCCAACCTGAGACAAAACGAGATGGTCGTACA
GTACGCAACCAGCGCATCCCCGCCAACTAGGAGTCATGCGAGCGTGAGTG
CGACATATGAGCCAGGACGTTTTGACTGCTGCTGCTGCGCATTATATGTA
GGGACAGCAGCTGCTGTACTGTAGATCCAGACCCGTTGTACAGCGCTGCT
TCTTTGCTCTTTTCTGCGTCTATAGTAGATAGAAAAGAACGGAACAACAT
CCACGACAGGACGACTTCATTTTTACCCACGGTGTACGCATACGCACAGC
AGTACGTCCACGTGCAGGGCGTACCCCCACACAACACATGGATGTACACC
GTAGTCTTTCTGTTGTGTGATAATGCTCTTTCAAGGAATGCGCCGTCGGT
GTCGGTACGACCGAAGATGACACCCAACGATCGCCACATCCCGTGGTCAT
ATTTTGAATCTTGAACAGGGCCGAGTTAGCGCCCGGATTCGATGACTATG
CTGTAGATTACACCTCCCTGAGATTTTCGCTGCGAATACATGTATGGGGT
CTGTGCTACTGCTCGCACGAAGTGCCGCGATCATGACCCTCAGAACAGGA
ACGTCCCACAATACACCCCTCTGTATGCGGGGGAACCACACCGGCCCTCT
GTAGACAACGACAGGAATGTGTCGCAGGGAACAAAAAAAAAAGTCTAGCA
ACCTTTTCAGCGGTGCAAGCTCGGGGGGTGATGTTTCTCCATTCTTTATT
TTAAAGGAGCAAAGTACTTTTAGTTACAATACACGTGCGGGTGAATCCTC
TCGCTGCGGCGGTGACGGTGGTTGGCACAGCAAAAGGCGCCAATGTACCC
AATATTTACGTTTTTCACCCGTGCTAAGCATGCCTCTGACGACACACAAC
GTGATTTGTTTCAGCCAAGGTTGTTGGAAAAGACGAAATGTCTGTTCTTG
TGGTACACATTATGCACGGTTTCGGCGGTGGCACAACAGCCAACGAACGA
CTGCCGTTTTAAGCTGTGCCCAAACATCTGAACGTTGCTTTGTCGAAGCG
TTATTGTTCCTACATGATGACAGTTCTTGATATTTTTCCTTGAAGTCACC
CAGCTTGTCTTTCGCCTTTCTCCTGACGCCCACCCCCCCCTCCCCCCACT
TCTCGCCCCTTTCCGTTACTTCTCAAATCATCTCTCTTCCAACAGCGTCA
CCTTTACGACTCTGACACCTCTAAATACGAGTACATTGGGTGTTTCACGG
ACAGCCAAGAGGACCGCGTCCTGGACGACGTACTCACCTCGCATGATGAC
ATGTCTACTGAGGTGAGCAAACGCGGATCGATCTCTGGATGTGATGCTGA
AACACAAGACTGAATAATAGAGTTTCGGAACAATAGATCGATTTAAGAAA
ACTACTCGATTTGGGTGGAAGGAACGGTCTCGAAATTTTATTTTGTGGAG
ACCACAGAGTTGAACGCGGCGAGCAAACACAATGGTGCGGAAAGACTGCA
CAACAAGAAAAAGGACAGCAGCTGCTGTGCTACATCGAAACACCATATCA
CACATCATCGGCAGACCCTCCGGTGTGCAGGTTGATGAGGATCACACAGA
CCACGCAAGCATGCAGTTGAGGGGCTGCACCACCAGTGAGTGCCATCTGT
GAGGAGAGGGGTGTTCAAAAAGCCTCACTTCTGTTTTTTGTTGCAGTGTG
CAAACGAGAGACAAGGCCTTTTCCACGAGAAGAGAGGAGAGAGAGAGAGA
GAGAGAGAGAGGAGGGAGGGAGGGAGCATCCTCAGCAGCGAACAAGAGAG
GAGACGCGAAACACTTCACCCCGTACATATACAGTAGGGCACATCACCGA
GCCGTCTCTACACACCAGACAATTTTAATCTTCCTCGTTTCCTCATATTG
CTTCTTCTCTCGCCCAGCAACAACCTAACAGACATACGATCAACACAGCA
CGCACACACTCACAACACAGAGCAACCAACCCCCAGATAGGTAAGGTCTG
ATCTTCGTTTGTAGCGATGGAGTCCACAACAGCACCTTCAGTGGTGTCTG
GAGTTCTGCTTTCCCACCAGTACTACTACATACTGCTGTTTTTGTGTGTT
GTTGTGGGTCTCTCTGCTCCTAAATCCACAACTTCTCCTGAAAGCGATTC
CGATTTAGAAACAAACGGCGCCGGGCCTCTGTTCTTTTAAATCTGAATGC
CCCTTCCCAGATTTACAAACTCGATGTTCCTCCGTTTTGGGGGACGTTCC
CAAAACTGGACCCTTCCACCAAAATCGAAAAAATATCACCTAATAAATAC
GAGTGGTTGATGACCGTTGATCGTGGGACTTGTCGCCACACTAGGGAGGG
CAGGGTGTGTTACTGCTTGTCTCTTCCCGCGTTTCAAGATGGTGTATTAT
TTTGCTCCCATCGAGGAACGAACGTCTTCCTGGCCTGACGCTGATCTCTT
CATGTACGCCTACCGCTGCCACCACGCTTATTCCGTTTTTGTTCAGAAAT
GCTACGAACATTGCGTAGGGATGGGTGCTGAGTACATGGCGACTCAGTGG
GCGAGGGAGTGCTTCTGCTCCAACAACAAGGACCTCGAGTATGACCGACA
TGAGCGAGATGGATCGACCGCAGAGTGCGACATGAGCTGCACAGGTGTTG
AGGTAAATTACATCAACAAACGTTCAGCGAGACTTGTGGTGGCGGCGTGC
GTAGTATTAAGACCAGGGCCGCCTCGTGGTATATTTTCGAACCCGAACCA
TCTTTTGGACCATATGAGGCTTGACGGTTTGACAAGAGACGAAGCTCTTC
GATGAGAGGCTACGTCATCCCGTAGCGGAGAGGAAACAATCGTCAAAGGT
CTCGGCGACGAGAGGAATGACTCAATCAAGCTCACCACGGCTATGGCAAC
TCACTTGATATAAAGCCCCTCAGCTGATGCCTCATACAAAGTTTGGAAAG
CTATCTGACTCCTGCAACAACCAAACACACGACGCGTGCAGGGAGAGACG
TGCGGAGGAGACCACGCCTTCGACCTGTACAAGATTGGAGGTTCCACCGA
GAATTCGCCGTCGCCCTCCCCCTCCCCCTCCCCCGACGACATGGCGGGGC
TCCTCGACTTGCACAACGAAGCAAGGTGAGACATGTGAGGGATGTATATG
TTCGTCGTGTACAGTAGATTGGCTTCAGCTGCCTCGTCATTCTCAGTATC
AGGGCTCGCCCATTGTGGTAGGCTTGTGCTGAGAGAAGGATGTCACACCA
AAAATCAAGCTTAAAGAGAAAAAAATCACCTCGACTTTGCCAGGATCCCC
ACTTCGCTAGGATCCCCACCAGAAACCAACGGATCAGTTCGATTTGTTAT
TTACAGAACTATTGTACTGTACTATCGGACCTCCACGACGACGCCCTTTT
CCCGCGTCGCCTGAGTCAAGGTGCGTTCACGATGCGGACCCTCTCGGATG
GAGCGACCCGGTGACATCTTCCGCCGCGGAACACGCGGTGAGGCTCACGG
ACCAATGCACCTCGAGCCTATTCCACAGCACCGAGGATCAGCGATACGAC
TTCGGCGAGAACCTGTTCGCGTGCTGGGGCTCGGACACATGCTACAACCA
CGAGAATGCCATGGAAAACTTATGTAAGTTTTTATTGTTTGTTTTCTCGA
GCGTTGTTATGCGCTCGCTGGAAGTCAGTCCCGCGCATCGGTTCGCAAGT
TATTTGGCCTTGTTCGCACCATGATGAAGACGCTTGACGGGTGAGCAGCA
AGCGACTTTGAAGAAGGCGTACCGCGGCAGCTTTGTCGACAACAAGTGCT
CCCTGCTTTGTGCCCACATAGGATCTTCCAAGAGACCTCGCCACGCTTCT
CCGTACTTCACGCTCAGCGCCGATGTATCTGTTACAACATCTAAATAATG
TTGACCCCTTCTTCCGCCCGACCTATGCCACAGACGTAAAGGAAGTCCAA
TTCGACGCGGTTACCGACTACATCGGCCACGCGACCCAGATCCTGTGGAA
GTCTACGAAGAAAGTCGGATGCGTCTTGGCGGGGTGCACCAACAGCGGAG
TCCCCTACACGTTCCTCGTGTGCCAGTACGACCCAGCGTGAGTTCCGAGC
TCTTTGTTGGTTGCCTGACCCCATGTCGGAGGAAACTAGAGTTTGCCTCG
CGCGCATTGTTGTCGCGGTACACGGCACTGCGAAAATATGCTAATGGATC
AAGTTTTTTTTTAGACAGTCGGCGTTCCCTGCTTGTAAATCAAACTTGTG
CTTACGCGTGCGGAATGCTCATTTGACTGTTTCTCCCCTTGCTTCTGTTT
TGTGCGGTATCTCTCATGTTTCATGTGTCACCAGGGGCAACATGGGCGAC
GACGCAGATTACAGAAAAGAAGTGGGGCTACCTAACCCTGACAACTCGTG
CTAAACGGGCAGACCCCGCCACGCGCTGTTGCTCTGCATGGGGGGGCGAA
ACTGTTGCAACGATCATGAGTTTTGATATTGATGTTCGTGGTGCAACGCA
CGAGCTACTACTGATGGCCGCGATGAGGTCATGAAAATGCGCCGAACACC
AGACTCAAAGCCTTCCTCCGAGATTCGGGGGGACGTGCTTCGTAGCAGCG
CTAGAGTTTATTGTTGGGCTGCGTGTATACGTGCTTTGTACACATATTGC
AGACTTTTCTGTTTAGTTCAGCTCAGTCACTTGTTGTACTACAGTCTTGT
TTTATCCGTAGGTGGTAAGAATTTTACGTTGTCTGTCTTGTGATTGGTTC
TACATACAATAGTCGAGATATCGTAGTTTTAGTAGGGTAGTCCCAATTCA
TTCGTGACATGCGGGCATATGGCCATGGTTTTGAACAGGATCTCGATCTC
GGTGTGTCGGCCTACATCGTTTTTCGAGAGGATAGTATCATAGAACTGAG
CTTGTCTTTACGGCAGCGGGGACGTAGAGGATGAATTTACAAAGAACGCT
CGTGAAGTTTGTTTTTCCCAGACTGTGGTACTTCTAGCTCGTACGTGGTA
ACATGCCAACCCACAGGAAAGTACTGCCCCGTTGTTAAGGTTTTGTTGTA
CGCAGAAGCCGGCGGGAGTAAGTACTCTCAAATCTGGTGCCACCAAGAGC
CTTTCGCACCGTTGGTTTGTGTTGATTGAGCACCGGTGAACCCTTTACGG
TCTTAAGATCCAGCACCGGGTGATTGCTTCGGAAGGCGCATGCATCAGTT
GTGTTGGACCGGAACGGACATCAGATAGACTGCTTACTTGCGCATATACC
GCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7011:1795..7097-

>mRNA_Ecto-sp13_S_contig7011.18062.1 ID=mRNA_Ecto-sp13_S_contig7011.18062.1|Name=mRNA_Ecto-sp13_S_contig7011.18062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=975bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7011:1795..7097- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCATGGGTAAGTCAGGCGTCGCGCTGCTTGCGCTGGCCCCCGGGAG
CGTGATGGTCGGGGCGGCCAACCTGAGACAAAACGAGATGGTCGTACAGT
ACGCAACCAGCGCATCCCCGCCAACTAGGAGTCATGCGAGCCGTCACCTT
TACGACTCTGACACCTCTAAATACGAGTACATTGGGTGTTTCACGGACAG
CCAAGAGGACCGCGTCCTGGACGACGTACTCACCTCGCATGATGACATGT
CTACTGAGAAATGCTACGAACATTGCGTAGGGATGGGTGCTGAGTACATG
GCGACTCAGTGGGCGAGGGAGTGCTTCTGCTCCAACAACAAGGACCTCGA
GTATGACCGACATGAGCGAGATGGATCGACCGCAGAGTGCGACATGAGCT
GCACAGGTGTTGAGGGAGAGACGTGCGGAGGAGACCACGCCTTCGACCTG
TACAAGATTGGAGGTTCCACCGAGAATTCGCCGTCGCCCTCCCCCTCCCC
CTCCCCCGACGACATGGCGGGGCTCCTCGACTTGCACAACGAAGCAAGGT
GCGTTCACGATGCGGACCCTCTCGGATGGAGCGACCCGGTGACATCTTCC
GCCGCGGAACACGCGGTGAGGCTCACGGACCAATGCACCTCGAGCCTATT
CCACAGCACCGAGGATCAGCGATACGACTTCGGCGAGAACCTGTTCGCGT
GCTGGGGCTCGGACACATGCTACAACCACGAGAATGCCATGGAAAACTTA
TACGTAAAGGAAGTCCAATTCGACGCGGTTACCGACTACATCGGCCACGC
GACCCAGATCCTGTGGAAGTCTACGAAGAAAGTCGGATGCGTCTTGGCGG
GGTGCACCAACAGCGGAGTCCCCTACACGTTCCTCGTGTGCCAGTACGAC
CCAGCGGGCAACATGGGCGACGACGCAGATTACAGAAAAGAAGTGGGGCT
ACCTAACCCTGACAACTCGTGCTAA
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