mRNA_Ecto-sp13_S_contig12127.1806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12127.1806.1
Unique NamemRNA_Ecto-sp13_S_contig12127.1806.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12127.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12127contigEcto-sp13_S_contig12127:2906..4187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size233
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462644.7942297-CDS-Ecto-sp13_S_contig12127:2905..30151681462644.7942297-CDS-Ecto-sp13_S_contig12127:2905..3015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12127 2906..3015 +
1681462644.8113248-CDS-Ecto-sp13_S_contig12127:4066..41871681462644.8113248-CDS-Ecto-sp13_S_contig12127:4066..4187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12127 4067..4187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12127.1806.1prot_Ecto-sp13_S_contig12127.1806.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12127 2906..4187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12127.1806.1

>prot_Ecto-sp13_S_contig12127.1806.1 ID=prot_Ecto-sp13_S_contig12127.1806.1|Name=mRNA_Ecto-sp13_S_contig12127.1806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
PARLKGTLVATTTRGAPLTGKVYDKGAGPASAMWQTRFEDGSRKELSAAS
VRRGNTLYEKLAQGAELRDFITVMGD*
back to top

mRNA from alignment at Ecto-sp13_S_contig12127:2906..4187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12127.1806.1 ID=mRNA_Ecto-sp13_S_contig12127.1806.1|Name=mRNA_Ecto-sp13_S_contig12127.1806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12127:2906..4187+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCGCGTCTCAAGGGGACACTGGTCGCGACGACCACCCGGGGTGCCCC
CCTTACGGGCAAGGTCTACGACAAGGGCGCAGGCCCAGCGTCCGCCATGT
GGCAGACGAGGTTGGTTCCCTTGTAAACCCTTGTTGCCTTGTTTCAGCGC
CTTCGTTCGTCTTGGGTCGGCCCTACGTCGGCCCTGAATGACTCACTGTC
TGTGTTGGGGGTTACCGTACTACTGCTGTAGTGTGAGTTAGTGAGCCGTC
AACACCCCCACCCCAGACCGGCTTTCAGATGCACATGACATACTGTAGCT
GGATTTTCTCCGCAACGAAAGGTTGCCAACGCCGCAAATGGTGACCGAGT
TTGGAGGAGACTTCGTCCAGAGCTTTCGTTTCGGCTGGTTTTGGCACAAT
CGTGCTCGTGGAGCAGTCAGTATCGGGCCTCAAGCGTCGGTCGAGGGTGT
GTGCGATCACTCGCACATTTACGGTACAACTGTACTGTACAGCAGTATAA
TACACACGGTACTGAGCCTTTCGTGTAACGGGTTCAGCACACCCCTTGTT
CAGGGACTCACCAGTCCATGTGGCGGGTGTTTATGGTCAACCCGATGTTG
CGAATTTTTTCTCTCGAAATACGAAAAACGTGGCTGTTGGGCAGAGACTC
GAGCACCAGCGGCACGTAGGCCGCGAGACCTTACTATCATATCTACTGCC
CTCCATGCTTCCTCGTATTTTTGATTCGCGCCCCGCAATCGGAGTGAGTC
TGTATGTCGAACGAACTTTTCTAACGTGATATGTATTCAGCTTGTTCTAG
CAGAGACCTCTCCACCGCTGGCTTGGTCTTGTACAGTAGACTGTTTTCTT
TTGTCTAACGGTAAAGACAGTAATGGAGGCGTTTATATCTTCCAGTTCTA
TGTTGCTTCCGCCTCTCTATGCGAACGACGCATGTATGCATACCACGGGT
CTACATGTAGCGCTCTTCACTTCGAAACAAGAGCCGGTCTCATGTTTCTA
GCCAGTTTCTGCTCGCTGGGGTAGCGCCTGAAGGACGCGACGGCAGCGCC
TGTTGGCGTTGGACGAAGGTGGTGCGGTGCAGATTTGCGCTCCCTGTGTC
GTCTACCTCCACCGCCCCATAACCACCGTCCGTGCAACCAACTCGACATC
GCTGATGGAAGGTTTGAGGATGGCTCAAGGAAGGAGCTCTCCGCCGCCAG
CGTGAGGCGCGGCAACACGCTGTACGAGAAGCTTGCGCAAGGGGCCGAGC
TTCGTGATTTTATCACAGTGATGGGAGATTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12127:2906..4187+

>mRNA_Ecto-sp13_S_contig12127.1806.1 ID=mRNA_Ecto-sp13_S_contig12127.1806.1|Name=mRNA_Ecto-sp13_S_contig12127.1806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12127:2906..4187+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCGCGTCTCAAGGGGACACTGGTCGCGACGACCACCCGGGGTGCCCC
CCTTACGGGCAAGGTCTACGACAAGGGCGCAGGCCCAGCGTCCGCCATGT
GGCAGACGAGGTTTGAGGATGGCTCAAGGAAGGAGCTCTCCGCCGCCAGC
GTGAGGCGCGGCAACACGCTGTACGAGAAGCTTGCGCAAGGGGCCGAGCT
TCGTGATTTTATCACAGTGATGGGAGATTGA
back to top