prot_Ecto-sp13_S_contig12126.1805.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12126.1805.1
Unique Nameprot_Ecto-sp13_S_contig12126.1805.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length122
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 6.850e-73
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIARK 122
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK   +K
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 2.360e-71
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:   46 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 6.800e-69
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LKRGKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 3.510e-68
Identity = 110/117 (94.02%), Postives = 116/117 (99.15%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKST++S+KAGLQFPV R+GR+LKRGKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:   52 MSGKGKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 5.500e-67
Identity = 105/117 (89.74%), Postives = 114/117 (97.44%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKK T+RSAKAGLQFPVGR+GRF+K+GKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPK 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: A0A6H5KGY1_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY1_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 5.860e-64
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.370e-63
Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKTIAR 121
            MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPK  A+
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 196 bits (499), Expect = 5.580e-63
Identity = 102/118 (86.44%), Postives = 113/118 (95.76%), Query Frame = 0 
Query:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRG KKSTT SAKAGLQFPVGR+GR+L++GKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPK
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPK 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 5.800e-63
Identity = 101/117 (86.32%), Postives = 111/117 (94.87%), Query Frame = 0 
Query:    1 MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGKKSTT SAKAGLQFPVGR+GR+LK+GK+A+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RI PRHI LAV+NDEELNKLLG VTIA GGVLPNIH+VLLPK
Sbjct:    1 MSGKGKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPK 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA)

HSP 1 Score: 197 bits (501), Expect = 8.080e-63
Identity = 102/121 (84.30%), Postives = 114/121 (94.21%), Query Frame = 0 
Query:    1 MSGKGKGGRGK----KSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPK 117
            MSGKGKGGRGK    KSTTRSA+AGLQFPVGR+ RFL++G++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RIIPRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPK
Sbjct:    1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPK 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12126.1805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI9_ECTSI6.850e-7395.90Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7G193_ECTSI2.360e-7199.15Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KG79_9PHAE6.800e-6994.02Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FVQ5_ECTSI3.510e-6894.02Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LLP0_ECTSI5.500e-6789.74Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KGY1_9PHAE5.860e-6499.15Integrase catalytic domain-containing protein n=7 ... [more]
A0A6U2JFS4_9STRA1.370e-6385.25Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A448ZH28_9STRA5.580e-6386.44Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2GRL8_9STRA5.800e-6386.32Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
A0A7S0DT92_9EUKA8.080e-6384.30Histone H2A n=1 Tax=Amorphochlora amoebiformis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 12..34
score: 68.99
coord: 56..69
score: 90.54
coord: 98..116
score: 76.04
coord: 70..84
score: 77.52
coord: 41..56
score: 90.36
IPR002119Histone H2ASMARTSM00414h2a4coord: 3..121
e-value: 1.8E-77
score: 273.3
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 11..87
e-value: 3.7E-15
score: 56.4
IPR009072Histone-foldGENE3D1.10.20.10coord: 1..122
e-value: 1.3E-60
score: 205.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 2..120
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 90..118
e-value: 5.4E-18
score: 64.4
NoneNo IPR availablePANTHERPTHR23430:SF251coord: 5..118
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 5..118
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 20..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12126contigEcto-sp13_S_contig12126:4257..4622 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12126.1805.1mRNA_Ecto-sp13_S_contig12126.1805.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12126 4257..4622 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12126.1805.1 ID=prot_Ecto-sp13_S_contig12126.1805.1|Name=mRNA_Ecto-sp13_S_contig12126.1805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MSGKGKGGRGKKSTTRSAKAGLQFPVGRVGRFLKRGKYASRVGAGAPVYL
AAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVT
IASGGVLPNIHAVLLPKTIARK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR032454Histone_H2A_C
IPR032458Histone_H2A_CS