mRNA_Ecto-sp13_S_contig7000.18047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7000.18047.1
Unique NamemRNA_Ecto-sp13_S_contig7000.18047.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: D7FZY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY0_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 8.610e-132
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 1
Query:  274 MEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVGGTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            MEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVGGTGSS KPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDT+LDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDD+YRLAAVSGDGK+
Sbjct:    1 MEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVGGTGSSSKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTILDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDEYRLAAVSGDGKL 191          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A7S2UTZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTZ9_9STRA)

HSP 1 Score: 191 bits (486), Expect = 9.200e-58
Identity = 88/143 (61.54%), Postives = 113/143 (79.02%), Query Frame = 1
Query:  424 GSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIF-RRGFADEGDHA-PDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            G     LQ TGV WS TGSV+ ASFGR+D+ GWCD PG L  WNIF RRGF    D A P+ V +HSSCLMCV+CHP  PAIIAAGSFNGEV+VWDT+ +EPL+A+TKIDD +HREP+  ++WV++ R+++Y++++VSG+GKV
Sbjct:   14 GKKITSLQCTGVGWSATGSVLVASFGRHDLCGWCDIPGVLCAWNIFQRRGF----DPAKPEFVYEHSSCLMCVACHPTKPAIIAAGSFNGEVLVWDTAAEEPLIASTKIDDYFHREPIVKVAWVYDLREEEYQVSSVSGEGKV 152          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A835ZBI6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 5.320e-55
Identity = 99/199 (49.75%), Postives = 129/199 (64.82%), Query Frame = 1
Query:  274 MEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVGGTGSS----FKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGF-ADEGDH-APDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHN--PRDDDYRLAAVSGDGKV 846
            ME  L  +  S AF  YAP  +   + + LH  L C+   LL A G      S     + LQ TGV W+ TGS +AAS+GR ++AGWC+ PGALA WN F+R   ADE     PD V DHSS LMC+ CHP  PAI+AAGSFNGEV+VW+T+ D+PLL  ++IDD +HREPVT ++WV++   + + YRL + SGDGK+
Sbjct:    1 MEGLLQSNATSVAFKEYAPAPDEDSSHVKLHAILQCNTEALLRARGQSAMRESSQRGVQSLQCTGVSWNSTGSTLAASYGRLNVAGWCNEPGALACWNAFKRSSSADEAATLTPDVVFDHSSYLMCLCCHPTHPAIVAAGSFNGEVLVWNTAADDPLLGVSQIDDYFHREPVTQVAWVYDMDEQGEGYRLVSTSGDGKI 199          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: W4FF73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FF73_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.480e-51
Identity = 104/280 (37.14%), Postives = 156/280 (55.71%), Query Frame = 1
Query:   16 FQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVDCCSTQTRISATAETQTE---QDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVGGTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            FQD H G+  F +    K    +      +++ +  STQT ++    +QTE   +D      P+ +S           V  FL   G  M  E+  S+ S AF+ + P ++  D  ++  +TL+ D              S+   L+ TGV W+ TGSV+A ++GR D +GWC+    L  WN+F    AD   + P  VL+ SS LMCV+ HP +PA++AAGSFNGE++VW+TS +EPL+AT+ I D +HREP+T L+WV++    +Y +A+VSGDGKV
Sbjct:    4 FQDCHAGSCTFRSKASVKKATSNASTDAVQVEFESASTQTAVAVDNGSQTEYISRDCSTTHPPDEVSS---------AVQAFLNSAGNRMLREMKHSNQSSAFLDFEPEQDADDKHVSKVFTLTFDFFTHFKQPIDAKKPSARLKLECTGVSWNATGSVLAVAYGRFDHSGWCNYRSVLCLWNLFS---ADFNANKPTLVLETSSGLMCVAHHPTNPAMVAAGSFNGELMVWNTSLEEPLVATSGIGDYFHREPITKLAWVYDTPSREYHIASVSGDGKV 271          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A7S1CG11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG11_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.060e-49
Identity = 107/247 (43.32%), Postives = 145/247 (58.70%), Query Frame = 1
Query:  124 STQTRISATAETQTE--QDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVG----GTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            S QT +  + ETQTE  +  E K    +I G+   +D    VA FLERV   M+ +L+++ AS AF  Y  +    D++  + + LS    +   A   G    GT      L  TGV WS TGSVV ASFG  D +GWC     + TWN+F +G        PD +LD  SC+MCV+CHP  P+++AAG+FNGEVVVWDT+  EPL+A ++IDD +HREPVT + W+++     Y LA+VS DGKV
Sbjct:   49 SAQTLVPQSIETQTEPLEADEGKEADLSIDGWRPDAD----VAEFLERVAPIMDMQLSRNAASHAFDDYDALAATEDDDPEVVHVLSTTFLQPADAVEGGEAKEGTEDVEVTLPCTGVSWSSTGSVVCASFGFQDHSGWCTHRAGVGTWNVFGKGLRAG---TPDVLLDTMSCVMCVACHPERPSVVAAGTFNGEVVVWDTNEAEPLVAQSRIDDYFHREPVTRVEWLYDMFARAYMLASVSADGKV 288          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A067CJD9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJD9_SAPPC)

HSP 1 Score: 178 bits (452), Expect = 1.760e-48
Identity = 117/283 (41.34%), Postives = 157/283 (55.48%), Query Frame = 1
Query:   16 FQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVDCCSTQTRISATAETQTE--QDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIE-EGGDNEIALHYTLSCDLSELLSAT---GVGGTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            FQD H G  +F +    K   V    +T  ++     TQT I+A +  QTE  + S  K+        DD       V  FL  VGG M  E+  S  S AF  ++  E +  D ++   +TLS D      A    G GG  S+ + LQ T V W+ TGSV+A ++GR D +GWC+   AL  WNIF   F       P  VL+ SS LMCV+ HP  PA+IAAGSFNGEV+VW+TS +E L+A++ I D +HREP+  +SWV++P   DY +A+VSGDGKV
Sbjct:    3 FQDGHGGGCSFRSKAAVKKVGVDASSETPGVEFVSADTQTAIAADSSCQTEPIESSSTKV------AVDD-----ARVKAFLNDVGGLMLREMQASAKSLAFDDFSVEEADAEDADVTRLFTLSFDFFTHFKAPAEIGAGGRPSTLQ-LQCTAVSWNATGSVLAVAYGRFDHSGWCNYRSALCLWNIFHPDF---NVAKPSLVLETSSGLMCVAHHPTMPAVIAAGSFNGEVLVWNTSLEETLVASSGIGDYFHREPIAKVSWVYDPVARDYNIASVSGDGKV 270          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A1W0AAK0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAK0_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.390e-47
Identity = 111/279 (39.78%), Postives = 154/279 (55.20%), Query Frame = 1
Query:   16 FQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVDCCSTQTRISATAETQTEQDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIE-EGGDNEIALHYTLSCD-LSELLSATGVGGTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            F DAH G+ +F +    K   V+   +T  ++     TQT I+A +  QTE        P  I+   + +D    V  FL+  G  M DE+  S  S AF  +   + +  DNE    +TL+ D  +   S             LQ TGV W+ TGSV+A S+GR D  GWC+   AL  WNIF   F       P+ VL+ SS LMCV+ HP  PA++AAG+FNGEV+VW+TS +E L+A++ I D +HREP++ LSWV++    DY +A+VSGDGKV
Sbjct:    3 FNDAHGGSCSFRSKAIVKKNGVNASTETPPVEFTSADTQTAIAADSWCQTE--------PIQIAIAKEPAD-ENAVKEFLKSAGRLMLDEMKASMKSLAFDDFIVEDHQVEDNEATKLFTLAFDYFAHFKSPVEGKRDAQETLKLQCTGVSWNATGSVIAVSYGRFDHTGWCNYRSALCLWNIFHHDF---NPSKPNLVLETSSGLMCVAHHPTMPAVVAAGTFNGEVIVWNTSLEENLVASSGIGDYFHREPISKLSWVYDATSRDYNIASVSGDGKV 269          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A024UJE0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJE0_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.450e-47
Identity = 103/278 (37.05%), Postives = 155/278 (55.76%), Query Frame = 1
Query:   16 FQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVDCCSTQTRISATAETQTEQDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDL-SELLSATGVGGTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            FQD H G+  F +    K +         ++  +  +TQT ++    +QTE      +  ET +  D+   +   V  FL+  G  M  E+ + + S AF  +   ++  D  ++  +TL+ D  +             S   L+ TGV W+ TGSV+A S+GR D +GWC+   AL  WNIF    AD     P+ VL+ SS LMCV+ HP +PA++AAGSFNGE++VW+TS +EPL+AT+ I D +HREP++ L+WV +    +Y +A+VSGDGKV
Sbjct:    3 FQDCHGGSCTFRSKASAKKEAKDASTDAVQVDFEAATTQTSVAVDNGSQTEY-----ISRETTNQSDN---VSAAVHAFLQSTGPIMLREMKQGNQSAAFHDFWQEQDADDKHVSKAFTLAFDFFTHFKQPIDAKKPTQSGLKLECTGVSWNATGSVLAVSYGRFDHSGWCNYRSALCLWNIFS---ADFNPSKPNVVLETSSGLMCVAHHPTNPAVVAAGSFNGELMVWNTSLEEPLVATSGIGDYFHREPISKLAWVFDTPSREYHIASVSGDGKV 269          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A485LGC1_9STRA (Aste57867_20716 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGC1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.490e-46
Identity = 111/286 (38.81%), Postives = 151/286 (52.80%), Query Frame = 1
Query:   16 FQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVD--CCSTQTRISATAETQTEQDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIEEGGDNEIALHYTLSCDLSELL-------SATGVGGTGSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV 846
            FQDAH G+ +F +    K    ++   T  +QVD    STQT ++    +QTE         E   G    +++   V  FL + G  M +E+ K      F      +E  +       TL+ D            +AT      S+   LQ TGV W+ TGSV+A S+GR D +GWCD   AL  WNIF    AD     P  VL+ SS LMCV+ HP +PA++AAGSFNGE+ VW+TS +E L+AT+ I D +HREPVT L+WV +    +Y +A+V GDGKV
Sbjct:    3 FQDAHAGSCSFRSKASAKNP--TKDAMTDAVQVDFESISTQTSVAVDNSSQTEF-------IERAGGNQAAAEVTEDVQSFLTKAGARMLEEMNKGGQWAIFNELQQDDESDEKGATKILTLAFDFFSHFKPAATADAATAAVSKQSAGLQLQVTGVSWNATGSVLAVSYGRFDHSGWCDYRSALCLWNIFS---ADLNAAKPHVVLETSSGLMCVAHHPTNPAVVAAGSFNGEIYVWNTSLEETLVATSGIGDYFHREPVTKLAWVFDTPSREYHIASVGGDGKV 276          
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Match: A0A1V9YQW6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQW6_9STRA)

HSP 1 Score: 171 bits (434), Expect = 7.120e-46
Identity = 108/282 (38.30%), Postives = 159/282 (56.38%), Query Frame = 1
Query:   16 FQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVDCCSTQTRISATAETQTE-QDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSDASQAFIGYAPIEEGGDN-EIALHYTLSCDLSELLSATGVGGT-GSSFKPLQATGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPDTVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDDLYHREPVTSL--SWVHNPRDDDYRLAAVSGDGKV 846
            F DA+ G  +F +    K        +T  ++     +QT I+A +  QTE  +S+  L  + +            V RFL  VGG M  EL  +  S AF G+A  ++ GD  ++   +TLS D      A   G    ++   LQ TGV W+ TGSV+A ++GR D +GWC+   AL  WNIF    AD   + P  VL+ SS LMCV+ HP  PA++AAG+FNGEV+VW+T+ +E L+A++ I D +HREP++ +  +WV++    +Y +A+VSGDGKV
Sbjct:    4 FHDAYGGGCSFRSKATVKPVATDASTETPGVEFTSAESQTAIAADSWCQTEPSESKGALAKDAVD--------EDRVKRFLSDVGGLMLQELKAAAKSLAFDGFANEQQDGDEADLTRLHTLSFDFFAHFKAPTEGKEQATTGLKLQCTGVSWNATGSVIAVAYGRFDHSGWCNYRSALCLWNIFH---ADFNPNKPSLVLETSSGLMCVAHHPTMPAVVAAGTFNGEVLVWNTTLEESLVASSAIGDYFHREPISKVWVAWVYDSASREYNIASVSGDGKV 274          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7000.18047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZY0_ECTSI8.610e-13297.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UTZ9_9STRA9.200e-5861.54Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZBI6_9STRA5.320e-5549.75WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
W4FF73_9STRA7.480e-5137.14Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S1CG11_9STRA1.060e-4943.32Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A067CJD9_SAPPC1.760e-4841.34Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0AAK0_9STRA4.390e-4739.78Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A024UJE0_9STRA5.450e-4737.05Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LGC1_9STRA2.490e-4638.81Aste57867_20716 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YQW6_9STRA7.120e-4638.30Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7000contigEcto-sp13_S_contig7000:4043..7813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score392.1
Seed ortholog evalue2.2e-106
Seed eggNOG ortholog2880.D7FZY0
Preferred nameWDR34
Model size846
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0031503,GO:0032838,GO:0032991,GO:0035735,GO:0036064,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045504,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
Exons8
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
Cds size846
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7000.18047.1prot_Ecto-sp13_S_contig7000.18047.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7000 4043..7813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463961.4712646-CDS-Ecto-sp13_S_contig7000:4042..41981681463961.4712646-CDS-Ecto-sp13_S_contig7000:4042..4198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 4043..4198 +
1681463961.4851394-CDS-Ecto-sp13_S_contig7000:4546..46991681463961.4851394-CDS-Ecto-sp13_S_contig7000:4546..4699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 4547..4699 +
1681463961.4997308-CDS-Ecto-sp13_S_contig7000:4965..50941681463961.4997308-CDS-Ecto-sp13_S_contig7000:4965..5094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 4966..5094 +
1681463961.5102727-CDS-Ecto-sp13_S_contig7000:5422..54871681463961.5102727-CDS-Ecto-sp13_S_contig7000:5422..5487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 5423..5487 +
1681463961.5200753-CDS-Ecto-sp13_S_contig7000:6224..63411681463961.5200753-CDS-Ecto-sp13_S_contig7000:6224..6341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 6225..6341 +
1681463961.5300186-CDS-Ecto-sp13_S_contig7000:7003..70731681463961.5300186-CDS-Ecto-sp13_S_contig7000:7003..7073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 7004..7073 +
1681463961.5404758-CDS-Ecto-sp13_S_contig7000:7325..74121681463961.5404758-CDS-Ecto-sp13_S_contig7000:7325..7412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 7326..7412 +
1681463961.5505621-CDS-Ecto-sp13_S_contig7000:7744..78131681463961.5505621-CDS-Ecto-sp13_S_contig7000:7744..7813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7000 7745..7813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7000.18047.1

>prot_Ecto-sp13_S_contig7000.18047.1 ID=prot_Ecto-sp13_S_contig7000.18047.1|Name=mRNA_Ecto-sp13_S_contig7000.18047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp
MAIPEFQDAHFGAVNFSTNDENKLQMVSQGGQTSEIQVDCCSTQTRISAT
AETQTEQDSERKLDPETISGFDDWSDIPPGVARFLERVGGEMEDELAKSD
ASQAFIGYAPIEEGGDNEIALHYTLSCDLSELLSATGVGGTGSSFKPLQA
TGVDWSPTGSVVAASFGRNDIAGWCDSPGALATWNIFRRGFADEGDHAPD
TVLDHSSCLMCVSCHPLSPAIIAAGSFNGEVVVWDTSRDEPLLATTKIDD
LYHREPVTSLSWVHNPRDDDYRLAAVSGDGKV
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mRNA from alignment at Ecto-sp13_S_contig7000:4043..7813+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7000.18047.1 ID=mRNA_Ecto-sp13_S_contig7000.18047.1|Name=mRNA_Ecto-sp13_S_contig7000.18047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7000:4043..7813+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCCCTGAATTTCAGGACGCCCACTTTGGCGCGGTCAACTTCTC GACCAACGACGAAAACAAACTGCAGATGGTGTCTCAGGGGGGCCAGACCA GCGAGATCCAGGTTGACTGTTGTTCGACGCAAACCCGGATCTCGGCGACC GCTGAGGTGTGTGTGCCACTACAGGCGTGTTCGAAACCTGAGGAGTTGCC CGATGTTTACAAGTGCCGAACGCTCTCAAGAAAACTCTGGCTGCGGGGCT GTTGATATAGTGCTGCCCGTTGAGGCACGCCGGATACCACGAGTCAAATA TTAGACTACACAAAACAAGATGTCTGCATACGAACCTACAGCATGCAGCA ACCTGCAACACACATCGCCCGTGCCGAACCTGTTTCTGAGACCGGTAGTC ACATACTCTATGTCCCATGAATCTGATCCATGCAGTGCGGTACCCTCTGC GGCCTCGGGGAGTTTTGACGTGAAGTATTGTCGCGCTTTTTCGGCCGTCC CCAGACACAGACAGAGCAAGACTCCGAGCGCAAGCTCGACCCTGAGACCA TCTCGGGCTTCGATGACTGGAGTGACATACCCCCTGGCGTGGCTCGTTTC TTGGAGCGGGTGGGCGGTGAGATGGAGGACGAGCTAGCCAAGTCGGACGC CAGCCAGGTGATGCAGGAGAGACCTTCGTGTGTAAGTGGAGGACTGCTGT GCGAGAGCTTCCAGCCACCTCCAACAATACCACCAAGCATCCAACGCCAT GAAGTTAACGCAGTCCCCTGTGCGCTTTACTACAGCAGCTACATGAATTA CCGTTCTCTGTACTTGGTTCTACTTCCATCTAGATTGTGAGGTTCGTATA CACCGCGGCTGGCGCCGGTATTCTATCCAGCAAGCGGACTTTCCACTACC CCTTTTTCTCTCCACGAACACAGGCGTTCATTGGGTACGCGCCGATCGAG GAGGGAGGTGACAATGAGATAGCCCTCCACTACACCCTCTCGTGCGATCT TTCCGAACTGCTGAGTGCAACAGGCGTGGGAGGGACTGGGTCCAGCTTCA AGGTCAGAGTTTTCGAGCATTCGAGCCTACGTTGTTGTTGAGGAAAAGGA CAACGTTCGTCAGCGACGAGGTAGATCGAGAACTTACTACAGCTTGAGCC GTACTGACCTTGAGCTTTCAGCGCGCCTGAAGTTGCTTAGACGCGCGTAA ACTCAAAGCTCGTTGGGGTTGAAGATACCATAAACTCGAGATTTCGGCGA AGAATCCATGGCGGGCGGCGCATGTAGTGCCGGAAAGTCCTCAACTGGGG CCCTGACCATGCTTCCGACGCGCTGACCTCGCTTTTGCTACCATCCGTGC CCGTCGACAAAAATCGAGCTTCTTCGGTAGCCGCTCCAGGCCACTGGAGT AGACTGGAGCCCTACGGGATCTGTTGTAGCTGCTTCGTTCGGAAGGTATG TGCAAACATACGTTCGGGTGTTTTTTAACGCAGCAGCTTCAACAGAGGCC GCAAGGGAAAATACGGTTGATTTTTAAGACCTGTATCGATTGTAACGAGA GCATCGAGTGACACATGCTTACAGAGGCTAGCCTACACTACATGGTGTCC CCGCCGTATCTTATGACACGGGGTGTCCATAGATGAGTAACGGGGGCGGA GTACCCCACACGTCGAGCGATGTTTCTCCCGGTAGGCGAAACTCTCAATC TGTCCGCGAAGGTACGGCGGGAAGAGCTTGTTGACGCAGGAGTGGTACGC GTAGTCCTAACATCCGCGCTACACCACCGTGACTACGGAGTGACGGCACA AACCTTGACTTTTCTGCCCGGATTGGGCGAACTATGCAGCTTGCCATCGA TGGCACCTTCGCCGGGGGACAGATATTCTCGCTTCACCTACGTAAGGGGG TGCAGCAGTGCGGGGCCCCCAGTAGTACCGTCATGTGCGAGCCGTATACA CCGGCACCATACCCGGTGATCGGCACTAATCAGAATCGTGCCCAGTAGTG CCAAACTACAGAGGACTTTGGATGTGCCGTGACCTGTTGCCAGCGCTACA AAGGAACGATTGAGCCCCCCCCACTGTGCCTAGAAGACACCGGAACGGCA CTTAATGTGAAGACAACAACCAGCAACCACTACAACATCACCCTGTTGCC ATTCTTTGACGTATGTGTTCTTCGTTGAACAGAAACGACATCGCCGGCTG GTGCGACTCCCCAGGGGCCCTCGCTACCTGGAACATCTTCCGCCGAGGCT TTGCCGACGAGGGAGACCACGCGCCTGATACCGTTCTGGACCATAGCAGG TGCGAAGCAGGGGCAAGGGTGACAAGACCAGCGGGAGCTCTGTAGCGACC GAGGACAATGCACTTGTTGTCTGCCTGATAGCGTGGGTGAATAGAGTTAG GGTTGGGCGATGAAAATAGAACGTTGTGAAAAGGTCGGCTGTGTGGCAAT GCACATACGTGCAAATCTCAGTATTGTTTCATTTCCCAATAATATCTAGG AGCCACAGCAGTATCCCATCTGCAGCGGATGATGCGATGGTTTACATCCT CTAGATAGGGGTCCCCCTCACGGTCTTCATGTGCCCTTGGAGTACATACC TAGATGTGGTCGAGGTCTGGACTTCGAATTCCGGCCTTGAGACTGTTAAT AAACCATTGATGTTGATTTTTCGAAGTTTGACTTTACCACCAAGGACTAG ATGGGACGAACACACAAACACCAACGCGGAACAGGAATACCGACCCTCTC TCGTAATCGAAGTTGCAAGCATACACCATTGAAGGGAACATTAACATGTG AGAGGTAGTCCGGCTGGCGCGGTTGTGGGCCGGAACATGTTTGTAAACAT GAAGCAGGAAAAGATACAAAAAGAAAAAGTTGGTACAAGGCATGCGCATT GTGCAAGAGCCAACATTGTTAGCCCTGACCTGGTGTTCCCGCGTAACCTT CCCATGCCCAGCTGCTTGATGTGCGTCAGCTGCCACCCACTGAGCCCAGC GATCATAGCCGCGGGGTCCTTCAATGGCGAGGTACGCAATGTTGATGTTG CTGCAAACACCACGCCCTCGCCCAAAGCACACAGCTCAAGAGAAACCATA GGCTGTGTGAGGCCACCGCAATGACATGCGATTTCTTGTGGACTCCACGA TAGGGTACCTTTCACCCTGCCGCCACCCGATTGAACAGCCGCAAGAGCAT TGCAAATACAGAGGCCCCGAATGTTTACCAATAACATCTGGCGGGACCAT GCCGGGTGGGGCGTGCTTCCTCGCCCGTTGCAGGTGGTGGTGTGGGACAC GTCGAGGGATGAACCGCTGCTGGCAACAACTAAGATCGACGACCTCTACC ACCGAGAGCCGGTGACGTCGGTAAGAGGAAGAGACGAAACGTAACTATGC GCGTTACGGAGCGGGTGTGCGTAGCGGGTAGTCGGCCATCCAAGTCTCAG GGTGCGAGCAGTGATGCTAGAGTTGTGTGGGTGAGCAACTGTGCTTTTCT ATCAACGGGTGGGTGAGTCTTCGACAATGGCTTGGACACAAAAAGGTGGT ACATCCGGTGTAATAGCCAAAGATGTTGATTGGACACACATTTCAATCTC TGCATCAATGATGCCAGGATCACCAGCACCCGCGCGCAGGCACCTCACTT AATGCCACGCTTCAACGTTGTGTTTGCTTTTCTCGTCTCTCCCCCCCCCC AGCTATCCTGGGTGCACAACCCACGAGATGACGACTACCGCCTGGCCGCT GTGTCCGGAGATGGAAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7000:4043..7813+

>mRNA_Ecto-sp13_S_contig7000.18047.1 ID=mRNA_Ecto-sp13_S_contig7000.18047.1|Name=mRNA_Ecto-sp13_S_contig7000.18047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7000:4043..7813+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATCCCTGAATTTCAGGACGCCCACTTTGGCGCGGTCAACTTCTC
GACCAACGACGAAAACAAACTGCAGATGGTGTCTCAGGGGGGCCAGACCA
GCGAGATCCAGGTTGACTGTTGTTCGACGCAAACCCGGATCTCGGCGACC
GCTGAGACACAGACAGAGCAAGACTCCGAGCGCAAGCTCGACCCTGAGAC
CATCTCGGGCTTCGATGACTGGAGTGACATACCCCCTGGCGTGGCTCGTT
TCTTGGAGCGGGTGGGCGGTGAGATGGAGGACGAGCTAGCCAAGTCGGAC
GCCAGCCAGGCGTTCATTGGGTACGCGCCGATCGAGGAGGGAGGTGACAA
TGAGATAGCCCTCCACTACACCCTCTCGTGCGATCTTTCCGAACTGCTGA
GTGCAACAGGCGTGGGAGGGACTGGGTCCAGCTTCAAGCCGCTCCAGGCC
ACTGGAGTAGACTGGAGCCCTACGGGATCTGTTGTAGCTGCTTCGTTCGG
AAGAAACGACATCGCCGGCTGGTGCGACTCCCCAGGGGCCCTCGCTACCT
GGAACATCTTCCGCCGAGGCTTTGCCGACGAGGGAGACCACGCGCCTGAT
ACCGTTCTGGACCATAGCAGCTGCTTGATGTGCGTCAGCTGCCACCCACT
GAGCCCAGCGATCATAGCCGCGGGGTCCTTCAATGGCGAGGTGGTGGTGT
GGGACACGTCGAGGGATGAACCGCTGCTGGCAACAACTAAGATCGACGAC
CTCTACCACCGAGAGCCGGTGACGTCGCTATCCTGGGTGCACAACCCACG
AGATGACGACTACCGCCTGGCCGCTGTGTCCGGAGATGGAAAGGTG
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