mRNA_Ecto-sp13_S_contig70.18043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI) HSP 1 Score: 551 bits (1421), Expect = 1.070e-195 Identity = 306/368 (83.15%), Postives = 314/368 (85.33%), Query Frame = 1
Query: 1 LPKANPRKKFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQPLPVKGDPDTELSTGAQGGLPVYKSPPGSQEERLEARRQNRCALCAESFSGGDGDGPPVWRVDDSSDDXXXXXXXXXGDGHDSDGAGGWSSDAGSTDFISQPYPGEQEXXXXXXXXXXXXXDDDSCWRLSPAHSKGKRAGKGSEGNGQPERFPASGEMPGGVKSPALANGNKHISFVDTTSDRYDSDGSEGGDQMK-ITGQSPPELPLAERLRLRRLTNC 1101
+PKANPRKKFFHCYLLQSQDPKH+RSTYIGFTVDPGRRIRQHNGDI GGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKV DLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASY KLNLPQPLPVKGDPDTELSTGAQ GLPVYKSPPGSQEERLEA+ XXXXXXX GDGHDSDGAGGWSSDAGSTDFISQPYPGE+ XXXXXXXXXX SCWRLS +RAGK SEG+GQPERFPASGEMPGGVKSPALANGNKHISFVDTTSDRYDSDGSE GDQMK ITGQSPP+LPLAERLRLRRL +C
Sbjct: 1 MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQEERLEAQXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXDGDGHDSDGAGGWSSDAGSTDFISQPYPGEEXXXXXXXXXXX------SCWRLSL-----ERAGKDSEGSGQPERFPASGEMPGGVKSPALANGNKHISFVDTTSDRYDSDGSEEGDQMKKITGQSPPKLPLAERLRLRRLRDC 350
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA) HSP 1 Score: 153 bits (387), Expect = 9.030e-42 Identity = 78/150 (52.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query: 76 STYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQP--LPVKGDPDTELSTGAQGGLPVYKS 519
STYIGFTV P RRIRQHNG+I GA RT+ KRPW M +V GFPSKS+ALQFE AWQHP +DR +K KV L + R + G+ KL +CKA++CL+PW RYGLG F + AA + LP L + D G L VY S
Sbjct: 2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALPDSDALQPRALDDAPRCVGPLDALAVYAS 151
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: A0A5J4Y6I9_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6I9_9CHLO) HSP 1 Score: 143 bits (361), Expect = 1.070e-36 Identity = 72/138 (52.17%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 28 FFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLP 441
F+ CYLL S DPK++ TYIGFTV+P RR+RQHNG+I GA RTKR RPWDMV +V+GFP+K ALQFE AWQHP + ++ + L + R G GK+RL ML LDPW Y L ++ L YA K P
Sbjct: 4 FYGCYLLTSLDPKNKGRTYIGFTVNPRRRLRQHNGEITAGAHRTKRGRPWDMVLVVYGFPTKVQALQFEWAWQHPTASKAVREAAQRLGTIAMR--GAKGKVRLLFEMLSLDPWCYYPLTVQLLSTSYAPLRNKCLQP 139
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: D8QRY0_SELML (GIY-YIG domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRY0_SELML) HSP 1 Score: 140 bits (352), Expect = 1.520e-36 Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1
Query: 28 FFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYA 414
F+ CYLL+S +P+ + TYIGFTV+P RRIRQHNG+I GAFRTK+KRPW+MV V+GF SK+ ALQFE AWQHP+ + + + P + R G+ GK+++ AMLC W+R L ++F E+A
Sbjct: 1 FYGCYLLRSINPRFKGQTYIGFTVNPRRRIRQHNGEITCGAFRTKKKRPWEMVLCVYGFSSKTDALQFEWAWQHPKLSKEVVLPAEVKPKNLR---GIAGKIKILHAMLCSPKWSRMKLTVQFFSSEHA 126
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: W9RZR0_9ROSA (Structure-specific endonuclease subunit SLX1 homolog n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RZR0_9ROSA) HSP 1 Score: 142 bits (359), Expect = 1.840e-35 Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 1
Query: 19 RKKFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVKGDPDTELSTGAQGGLPVYKSP-PGSQEERLEA 552
RK F+ CYLL S P+H+ TYIGFTV+P RRIRQHNG+I GA+RTK++RPW+MV +HGFPS SALQFE AWQHP + VR + G+ K++L ML L W + + + +Y S G L+LPQ VK P EL +G ++++ EER EA
Sbjct: 29 RKGFYACYLLVSLSPRHKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIHGFPSNVSALQFEWAWQHPNES----LAVRKAAASFKSLSGIANKIKLAYTMLTLPSWQSLNITVNYFSTKYTQHSAGCLSLPQHKKVKICPMDELPCYVKGDEGLFENEGEWDNEERDEA 204
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F) HSP 1 Score: 139 bits (350), Expect = 2.240e-35 Identity = 75/187 (40.11%), Postives = 104/187 (55.61%), Query Frame = 1
Query: 25 KFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDIN-GGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQ-PLPVKGDPDTELSTGAQGGLPVYKSPPGSQEERLEARRQNRCALC 579
+F+ CYLL S +PK++ TYIGFTVDP RRIRQHNG I GGA +T ++ PW+M+ +HGFP++ SAL+FE AWQHP + RR+K V + V R+ ML + PW R L IR+L++EY + L P +P+ G +P +K P + R E C +C
Sbjct: 8 RFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLKHVVEKKKSSEK---SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI-----------VYGSIPSWKKPKSADIAREEELETKTCCIC 180
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: A0A2I0KXX6_PUNGR (GIY-YIG domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KXX6_PUNGR) HSP 1 Score: 135 bits (339), Expect = 3.580e-35 Identity = 63/118 (53.39%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 22 KKFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWAR 375
++F+ CYLL S P+H+ TYIGFTV+P RRIRQHNG++ GA+RTK KRPW+MV ++GFP+ SALQFE AWQHP R V VR+ + + G+ K++L AML L PW R
Sbjct: 27 RRFYGCYLLVSLSPRHKGQTYIGFTVNPRRRIRQHNGELRSGAWRTKNKRPWEMVVCIYGFPTNVSALQFEWAWQHP----RESVAVREAAANFKSLSGITNKIKLAYAMLTLPPWQR 140
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: A0A061RKW1_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKW1_9CHLO) HSP 1 Score: 139 bits (349), Expect = 3.660e-35 Identity = 77/165 (46.67%), Postives = 97/165 (58.79%), Query Frame = 1
Query: 22 KKFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQP------LPVKGDPDTELSTGAQG 498
KKFF CYLL S DPK + TYIGFTV+P RRIRQHNG I GA RTK+ RPWDM +++GFP+K ALQFE AWQHP ++ +L R GV GK+RL ML ++P+ Y L ++FL +Y+A + P P P+ P L G G
Sbjct: 3 KKFFGCYLLASLDPKCKGRTYIGFTVNPRRRIRQHNGQIVNGAHRTKKGRPWDMALVLYGFPTKIHALQFEWAWQHPSTSLAVRDAYNNLT--KRERGGVAGKIRLLIEMLRVEPFCFYQLTLQFLSSKYSAMRAGMPSPPPHVAVEVAPLDDLPGELLDDGVDG 165
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: A0A5E4G6P4_PRUDU (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Prunus TaxID=3754 RepID=A0A5E4G6P4_PRUDU) HSP 1 Score: 137 bits (346), Expect = 4.830e-35 Identity = 69/146 (47.26%), Postives = 92/146 (63.01%), Query Frame = 1
Query: 25 KFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVK 459
+FF CYLL S+ P+++ TYIGFTV+P RRIRQHNG+I GA+RTKRKRPW+MV ++GFP+ SALQFE AWQHP + VR + G+ K++L ML L PW + ++F +Y S G LP+ + VK
Sbjct: 26 RFFACYLLSSRSPRYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSPRGLVSKIKLAYTMLTLPPWQSLNITVKFFSTQYTKHSAGCPRLPEQMKVK 167
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Match: A0A314YTX9_PRUYE (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YTX9_PRUYE) HSP 1 Score: 135 bits (341), Expect = 8.900e-35 Identity = 69/146 (47.26%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 25 KFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVK 459
+FF CYLL S+ P ++ TYIGFTV+P RRIRQHNG+I GA+RTKRKRPW+MV ++GFP+ SALQFE AWQHP + VR + G+ K++L ML L PW + + F +Y S G LP+ + VK
Sbjct: 21 RFFACYLLTSRSPSYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSLRGLVSKIKLAYTMLTLPPWQSLNITVNFFSTQYTKHSAGCPRLPEQMKVK 162 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70.18043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig70.18043.1 >prot_Ecto-sp13_S_contig70.18043.1 ID=prot_Ecto-sp13_S_contig70.18043.1|Name=mRNA_Ecto-sp13_S_contig70.18043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=368bp LPKANPRKKFFHCYLLQSQDPKHRRSTYIGFTVDPGRRIRQHNGDINGGAback to top mRNA from alignment at Ecto-sp13_S_contig70:33742..36737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig70.18043.1 ID=mRNA_Ecto-sp13_S_contig70.18043.1|Name=mRNA_Ecto-sp13_S_contig70.18043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70:33742..36737- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70:33742..36737- >mRNA_Ecto-sp13_S_contig70.18043.1 ID=mRNA_Ecto-sp13_S_contig70.18043.1|Name=mRNA_Ecto-sp13_S_contig70.18043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70:33742..36737- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |